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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359886 (21 seq.)
>C171105021
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
4062549
4062625
+
Arg
CCG
-
¡û
>W131160090
AQWH01000013
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
18705
18781
+
Arg
CCG
[ENA]
¡û
>W141180673
AYGY02000106
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
81103
81027
-
Arg
CCG
[ENA]
¡û
>WENV170231541
CEQH01211716
[CEQH] marine metagenome genome assembly TARA_076_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
302
226
-
Arg
CCG
[ENA]
¡û
>WENV170789211
MDSV01046463
[MDSV] marine metagenome; seawater
6086
6010
-
Arg
CCG
[ENA]
¡û
>WENV170826268
MDSY01108131
[MDSY] marine metagenome; seawater
251
175
-
Arg
CCG
[ENA]
¡û
>WENV170851881
MDTA01139646
[MDTA] marine metagenome; seawater
1452
1376
-
Arg
CCG
[ENA]
¡û
>WENV170892543
MDTD01039555
[MDTD] marine metagenome; seawater
2258
2182
-
Arg
CCG
[ENA]
¡û
>WENV170893508
MDTD01052737
[MDTD] marine metagenome; seawater
1476
1552
+
Arg
CCG
[ENA]
¡û
>W1810365587
PVUG01000013
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
58539
58463
-
Arg
CCG
[ENA]
¡û
>C151072548
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
2487158
2487082
-
Arg
CCG
[Ensembl]
¡û
>W2010570153
JAATVV010000012
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
196269
196345
+
Arg
CCG
[ENA]
¡û
>W2010636405
JABUOU010000004
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
339942
340018
+
Arg
CCG
[ENA]
¡û
>W2010725270
JACIDZ010000016
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
98363
98439
+
Arg
CCG
[ENA]
¡û
>W2011627763
SMAR01000015
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
72215
72291
+
Arg
CCG
[ENA]
¡û
>W2011976142
VCLB01000004
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
55062
55138
+
Arg
CCG
[ENA]
¡û
>W2012031674
VHLG01000011
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
225875
225951
+
Arg
CCG
[ENA]
¡û
>C211232421
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2956105
2956181
+
Arg
CCG
-
¡û
>C241169447
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
1797781
1797705
-
Arg
CCG
-
¡û
>C241169472
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
4631044
4631120
+
Arg
CCG
-
¡û
>C161070365
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
2804551
2804627
+
Arg
CCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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