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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359887 (21 seq.)
>W131160069
AQWH01000001
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
175065
174989
-
Pro
GGG
[ENA]
¡û
>C171105006
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
2163899
2163975
+
Pro
GGG
-
¡û
>W141180692
AYGY02000171
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
19991
20067
+
Pro
GGG
[ENA]
¡û
>WENV170176917
CEOS01138921
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
502
426
-
Pro
GGG
[ENA]
¡û
>WENV170231192
CEQH01132394
[CEQH] marine metagenome genome assembly TARA_076_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
307
383
+
Pro
GGG
[ENA]
¡û
>WENV170499675
CEVT01182074
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4013
4089
+
Pro
GGG
[ENA]
¡û
>WENV170800181
MDSV01225805
[MDSV] marine metagenome; seawater
14183
14259
+
Pro
GGG
[ENA]
¡û
>WENV170826724
MDSY01115793
[MDSY] marine metagenome; seawater
2003
1927
-
Pro
GGG
[ENA]
¡û
>WENV170846359
MDTA01041064
[MDTA] marine metagenome; seawater
2011
1935
-
Pro
GGG
[ENA]
¡û
>WENV170890702
MDTD01014088
[MDTD] marine metagenome; seawater
2272
2196
-
Pro
GGG
[ENA]
¡û
>W1810365588
PVUG01000014
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
119351
119427
+
Pro
GGG
[ENA]
¡û
>C151072535
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
4608759
4608683
-
Pro
GGG
[Ensembl]
¡û
>W2010570144
JAATVV010000008
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
73572
73496
-
Pro
GGG
[ENA]
¡û
>W2010636396
JABUOU010000002
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
144585
144661
+
Pro
GGG
[ENA]
¡û
>W2010725256
JACIDZ010000006
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
79087
79163
+
Pro
GGG
[ENA]
¡û
>W2011976144
VCLB01000005
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
67164
67240
+
Pro
GGG
[ENA]
¡û
>W2012031677
VHLG01000014
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
73461
73385
-
Pro
GGG
[ENA]
¡û
>C211232411
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
1320837
1320913
+
Pro
GGG
-
¡û
>C241169406
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
1453934
1454010
+
Pro
GGG
-
¡û
>C241169474
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
4974899
4974823
-
Pro
GGG
-
¡û
>C161070357
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1066585
1066661
+
Pro
GGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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