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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360380 (104 seq.)
>W1711130281
LUUQ01000002
Bacillota
Neobacillus mesonae [LUUQ]
1715152
1715078
-
Gln
TTG
[ENA]
¡û
>W1711130322
LUUQ01000003
Bacillota
Neobacillus mesonae [LUUQ]
113051
113125
+
Gln
TTG
[ENA]
¡û
>W1711130327
LUUQ01000005
Bacillota
Neobacillus mesonae [LUUQ]
52443
52517
+
Gln
TTG
[ENA]
¡û
>W1711130346
LUUQ01000005
Bacillota
Neobacillus mesonae [LUUQ]
1171403
1171477
+
Gln
TTG
[ENA]
¡û
>W1711318963
MAYV01000002
Bacillota
Bacillus sp. FJAT-27986 [MAYV]
82388
82314
-
Gln
TTG
[ENA]
¡û
>W1711318969
MAYV01000002
Bacillota
Bacillus sp. FJAT-27986 [MAYV]
686
612
-
Gln
TTG
[ENA]
¡û
>W1711336085
MBRJ01000002
Bacillota
Cytobacillus oceanisediminis [MBRJ]
78982
79056
+
Gln
TTG
[ENA]
¡û
>W1711336094
MBRJ01000017
Bacillota
Cytobacillus oceanisediminis [MBRJ]
171832
171761
-
Gln
TTG
[ENA]
¡û
>W1711336108
MBRJ01000025
Bacillota
Cytobacillus oceanisediminis [MBRJ]
235540
235466
-
Gln
TTG
[ENA]
¡û
>W1711336126
MBRJ01000052
Bacillota
Cytobacillus oceanisediminis [MBRJ]
867
941
+
Gln
TTG
[ENA]
¡û
>W1711336135
MBRJ01000056
Bacillota
Cytobacillus oceanisediminis [MBRJ]
341
415
+
Gln
TTG
[ENA]
¡û
>W1711677604
MRTQ01000009
Bacillota
Paenibacillus sp. FSL R5-0490 [MRTQ]
57997
57926
-
Gln
TTG
[ENA]
¡û
>W1711677620
MRTQ01000032
Bacillota
Paenibacillus sp. FSL R5-0490 [MRTQ]
7
81
+
Gln
TTG
[ENA]
¡û
>W1711677630
MRTQ01000036
Bacillota
Paenibacillus sp. FSL R5-0490 [MRTQ]
35866
35940
+
Gln
TTG
[ENA]
¡û
>W1711677652
MRTQ01000058
Bacillota
Paenibacillus sp. FSL R5-0490 [MRTQ]
80
6
-
Gln
TTG
[ENA]
¡û
>W1711677657
MRTQ01000061
Bacillota
Paenibacillus sp. FSL R5-0490 [MRTQ]
352
278
-
Gln
TTG
[ENA]
¡û
>W1711677665
MRTQ01000066
Bacillota
Paenibacillus sp. FSL R5-0490 [MRTQ]
249
323
+
Gln
TTG
[ENA]
¡û
>W141029014
ALEG01000020
Bacillota
Cytobacillus oceanisediminis 2691 [ALEG]
34005
33934
-
Gln
TTG
[ENA]
¡û
>W141029017
ALEG01000031
Bacillota
Cytobacillus oceanisediminis 2691 [ALEG]
82322
82248
-
Gln
TTG
[ENA]
¡û
>W141029027
ALEG01000032
Bacillota
Cytobacillus oceanisediminis 2691 [ALEG]
23234
23160
-
Gln
TTG
[ENA]
¡û
>W141029035
ALEG01000034
Bacillota
Cytobacillus oceanisediminis 2691 [ALEG]
76530
76604
+
Gln
TTG
[ENA]
¡û
>W141029041
ALEG01000039
Bacillota
Cytobacillus oceanisediminis 2691 [ALEG]
90
164
+
Gln
TTG
[ENA]
¡û
>W141064462
APVL01000002
Bacillota
Cytobacillus firmus DS1 [APVL]
1470
1544
+
Gln
TTG
[ENA]
¡û
>W141064475
APVL01000008
Bacillota
Cytobacillus firmus DS1 [APVL]
4754
4683
-
Gln
TTG
[ENA]
¡û
>W141064487
APVL01000016
Bacillota
Cytobacillus firmus DS1 [APVL]
84469
84395
-
Gln
TTG
[ENA]
¡û
>W141064495
APVL01000016
Bacillota
Cytobacillus firmus DS1 [APVL]
906
832
-
Gln
TTG
[ENA]
¡û
>W141064507
APVL01000032
Bacillota
Cytobacillus firmus DS1 [APVL]
339
413
+
Gln
TTG
[ENA]
¡û
>W141277245
JAEL01000003
Bacillota
Bacillus sp. J33 [JAEL]
87731
87805
+
Gln
TTG
[ENA]
¡û
>W141277251
JAEL01000003
Bacillota
Bacillus sp. J33 [JAEL]
88274
88348
+
Gln
TTG
[ENA]
¡û
>W141277264
JAEL01000057
Bacillota
Bacillus sp. J33 [JAEL]
23600
23671
+
Gln
TTG
[ENA]
¡û
>W141277281
JAEL01000185
Bacillota
Bacillus sp. J33 [JAEL]
248
322
+
Gln
TTG
[ENA]
¡û
>W141277287
JAEL01000201
Bacillota
Bacillus sp. J33 [JAEL]
842
768
-
Gln
TTG
[ENA]
¡û
>WENV170965710
MTEV01000919
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
793
719
-
Gln
TTG
[ENA]
¢þ
>WENV170965766
MTEV01002434
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
228
299
+
Gln
TTG
[ENA]
¢þ
>WENV170965884
MTEV01008368
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
529
603
+
Gln
TTG
[ENA]
¢þ
>W1911146535
NPDG01000132
Bacillota
Bacillus sp. 7894-2 [NPDG]
83792
83721
-
Gln
TTG
[ENA]
¡û
>W1911146536
NPDG01000135
Bacillota
Bacillus sp. 7894-2 [NPDG]
65
139
+
Gln
TTG
[ENA]
¡û
>W1911146546
NPDG01000170
Bacillota
Bacillus sp. 7894-2 [NPDG]
172
246
+
Gln
TTG
[ENA]
¡û
>W1911239855
NSEB01000014
Bacillota
Fredinandcohnia onubensis 0911MAR22V3 [NSEB]
753
827
+
Gln
TTG
[ENA]
¡û
>W1911239863
NSEB01000014
Bacillota
Fredinandcohnia onubensis 0911MAR22V3 [NSEB]
99922
99996
+
Gln
TTG
[ENA]
¡û
>W1911239883
NSEB01000020
Bacillota
Fredinandcohnia onubensis 0911MAR22V3 [NSEB]
1386
1460
+
Gln
TTG
[ENA]
¡û
>W1810609286
QGTW01000005
Bacillota
Cytobacillus oceanisediminis 15_TX [QGTW]
291453
291379
-
Gln
TTG
[ENA]
¡û
>W1810609301
QGTW01000007
Bacillota
Cytobacillus oceanisediminis 15_TX [QGTW]
269312
269238
-
Gln
TTG
[ENA]
¡û
>W1810609331
QGTW01000017
Bacillota
Cytobacillus oceanisediminis 15_TX [QGTW]
416
490
+
Gln
TTG
[ENA]
¡û
>W1810609339
QGTW01000017
Bacillota
Cytobacillus oceanisediminis 15_TX [QGTW]
104471
104545
+
Gln
TTG
[ENA]
¡û
>W1810721730
QNSF01000005
Bacillota
Cytobacillus firmus 14_TX [QNSF]
413498
413427
-
Gln
TTG
[ENA]
¡û
>W1810721742
QNSF01000007
Bacillota
Cytobacillus firmus 14_TX [QNSF]
369793
369719
-
Gln
TTG
[ENA]
¡û
>W1810721755
QNSF01000010
Bacillota
Cytobacillus firmus 14_TX [QNSF]
210609
210535
-
Gln
TTG
[ENA]
¡û
>W1810721766
QNSF01000016
Bacillota
Cytobacillus firmus 14_TX [QNSF]
88494
88420
-
Gln
TTG
[ENA]
¡û
>W1810721774
QNSF01000016
Bacillota
Cytobacillus firmus 14_TX [QNSF]
895
821
-
Gln
TTG
[ENA]
¡û
>W1810888186
QUQV01000011
Bacillota
Bacillus sp. HNG [QUQV]
144879
144805
-
Gln
TTG
[ENA]
¡û
>W1810888199
QUQV01000023
Bacillota
Bacillus sp. HNG [QUQV]
51893
51967
+
Gln
TTG
[ENA]
¡û
>W1810888212
QUQV01000028
Bacillota
Bacillus sp. HNG [QUQV]
1026
1100
+
Gln
TTG
[ENA]
¡û
>W11106729
ACWD01000015
Bacillota
Bacillus sp. 2_A_57_CT2 [ACWD]
18085
18011
-
Gln
TTG
[ENA]
¡û
>W11106741
ACWD01000032
Bacillota
Bacillus sp. 2_A_57_CT2 [ACWD]
80689
80760
+
Gln
TTG
[ENA]
¡û
>W11106779
ACWD01000066
Bacillota
Bacillus sp. 2_A_57_CT2 [ACWD]
143807
143733
-
Gln
TTG
[ENA]
¡û
>W11106789
ACWD01000081
Bacillota
Bacillus sp. 2_A_57_CT2 [ACWD]
1237
1163
-
Gln
TTG
[ENA]
¡û
>W11106802
ACWD01000082
Bacillota
Bacillus sp. 2_A_57_CT2 [ACWD]
23375
23301
-
Gln
TTG
[ENA]
¡û
>W1511479873
JWIQ02000047
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
26076
26002
-
Gln
TTG
[ENA]
¡û
>W1511479882
JWIQ02000052
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
24715
24789
+
Gln
TTG
[ENA]
¡û
>W1511479909
JWIQ02000075
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
676
750
+
Gln
TTG
[ENA]
¡û
>W1511479945
JWIQ02000090
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
9533
9460
-
Gln
TTG
[ENA]
¡û
>W1511479981
JWIQ02000117
Bacillota
Bacillus thermotolerans MTCC 10057 [JWIQ]
2693
2619
-
Gln
TTG
[ENA]
¡û
>W1511480032
JWIR02000025
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
189112
189038
-
Gln
TTG
[ENA]
¡û
>W1511480050
JWIR02000029
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
100188
100115
-
Gln
TTG
[ENA]
¡û
>W1511480060
JWIR02000035
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
2211
2137
-
Gln
TTG
[ENA]
¡û
>W1511480073
JWIR02000037
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
128998
128924
-
Gln
TTG
[ENA]
¡û
>W1511480123
JWIR02000088
Bacillota
Bacillus thermotolerans MTCC 8252 [JWIR]
4674
4600
-
Gln
TTG
[ENA]
¡û
>W1511480413
JWJE02000005
Bacillota
Bacillus thermotolerans SGZ-8 [JWJE]
136224
136150
-
Gln
TTG
[ENA]
¡û
>W1511480447
JWJE02000092
Bacillota
Bacillus thermotolerans SGZ-8 [JWJE]
2507
2433
-
Gln
TTG
[ENA]
¡û
>W1511480466
JWJE02000102
Bacillota
Bacillus thermotolerans SGZ-8 [JWJE]
652
578
-
Gln
TTG
[ENA]
¡û
>W1511480483
JWJE02000103
Bacillota
Bacillus thermotolerans SGZ-8 [JWJE]
579
506
-
Gln
TTG
[ENA]
¡û
>W1511480507
JWJE02000108
Bacillota
Bacillus thermotolerans SGZ-8 [JWJE]
506
580
+
Gln
TTG
[ENA]
¡û
>W1511643592
LDWQ01000011
Bacillota
Cytobacillus firmus LK28 [LDWQ]
90238
90309
+
Gln
TTG
[ENA]
¡û
>W1511643600
LDWQ01000019
Bacillota
Cytobacillus firmus LK28 [LDWQ]
894
968
+
Gln
TTG
[ENA]
¡û
>W1511643608
LDWQ01000019
Bacillota
Cytobacillus firmus LK28 [LDWQ]
88762
88836
+
Gln
TTG
[ENA]
¡û
>W1511643659
LDWQ01000114
Bacillota
Cytobacillus firmus LK28 [LDWQ]
5533
5459
-
Gln
TTG
[ENA]
¡û
>W1511693440
LFZV01000001
Bacillota
Bacillus sp. FJAT-27916 [LFZV]
3855335
3855261
-
Gln
TTG
[ENA]
¡û
>W1511706456
LGUF01000007
Bacillota
Sporosarcina globispora DSM 4 [LGUF]
4963586
4963512
-
Gln
TTG
[ENA]
¡û
>W1511706463
LGUF01000007
Bacillota
Sporosarcina globispora DSM 4 [LGUF]
1951060
1950989
-
Gln
TTG
[ENA]
¡û
>W1511706481
LGUF01000007
Bacillota
Sporosarcina globispora DSM 4 [LGUF]
433184
433110
-
Gln
TTG
[ENA]
¡û
>W1511706487
LGUF01000007
Bacillota
Sporosarcina globispora DSM 4 [LGUF]
343975
343901
-
Gln
TTG
[ENA]
¡û
>W1511706519
LGUF01000007
Bacillota
Sporosarcina globispora DSM 4 [LGUF]
134291
134217
-
Gln
TTG
[ENA]
¡û
>C161089002
CP015506
Bacillota
Cytobacillus oceanisediminis 2691 [CP015506]
178440
178514
+
Gln
TTG
[Ensembl]
¡û
>C161089010
CP015506
Bacillota
Cytobacillus oceanisediminis 2691 [CP015506]
279488
279562
+
Gln
TTG
[Ensembl]
¡û
>C161089035
CP015506
Bacillota
Cytobacillus oceanisediminis 2691 [CP015506]
495474
495548
+
Gln
TTG
[Ensembl]
¡û
>C161089050
CP015506
Bacillota
Cytobacillus oceanisediminis 2691 [CP015506]
1224604
1224678
+
Gln
TTG
[Ensembl]
¡û
>C161089057
CP015506
Bacillota
Cytobacillus oceanisediminis 2691 [CP015506]
4122898
4122969
+
Gln
TTG
[Ensembl]
¡û
>W1610072388
BCUY01000005
Bacillota
Cytobacillus firmus NBRC 15306 [BCUY]
32129
32058
-
Gln
TTG
[ENA]
¡û
>W1610072400
BCUY01000034
Bacillota
Cytobacillus firmus NBRC 15306 [BCUY]
216
142
-
Gln
TTG
[ENA]
¡û
>W1610072427
BCUZ01000089
Bacillota
Neobacillus fumarioli NBRC 102428 [BCUZ]
45
119
+
Gln
TTG
[ENA]
¡û
>W1610072449
BCUZ01000260
Bacillota
Neobacillus fumarioli NBRC 102428 [BCUZ]
645
571
-
Gln
TTG
[ENA]
¡û
>W1610072457
BCUZ01000267
Bacillota
Neobacillus fumarioli NBRC 102428 [BCUZ]
510
436
-
Gln
TTG
[ENA]
¡û
>W1610941354
LUUQ01000002
Bacillota
Neobacillus mesonae [LUUQ]
1715152
1715078
-
Gln
TTG
[ENA]
¡û
>W1610941395
LUUQ01000003
Bacillota
Neobacillus mesonae [LUUQ]
113051
113125
+
Gln
TTG
[ENA]
¡û
>W1610941400
LUUQ01000005
Bacillota
Neobacillus mesonae [LUUQ]
52443
52517
+
Gln
TTG
[ENA]
¡û
>W1610941419
LUUQ01000005
Bacillota
Neobacillus mesonae [LUUQ]
1171403
1171477
+
Gln
TTG
[ENA]
¡û
>W1611062278
MAYV01000002
Bacillota
Bacillus sp. FJAT-27986 [MAYV]
82388
82314
-
Gln
TTG
[ENA]
¡û
>W1611062284
MAYV01000002
Bacillota
Bacillus sp. FJAT-27986 [MAYV]
686
612
-
Gln
TTG
[ENA]
¡û
>W1710069590
BCUY01000005
Bacillota
Cytobacillus firmus NBRC 15306 [BCUY]
32129
32058
-
Gln
TTG
[ENA]
¡û
>W1710069602
BCUY01000034
Bacillota
Cytobacillus firmus NBRC 15306 [BCUY]
216
142
-
Gln
TTG
[ENA]
¡û
>W1710069629
BCUZ01000089
Bacillota
Neobacillus fumarioli NBRC 102428 [BCUZ]
45
119
+
Gln
TTG
[ENA]
¡û
>W1710069651
BCUZ01000260
Bacillota
Neobacillus fumarioli NBRC 102428 [BCUZ]
645
571
-
Gln
TTG
[ENA]
¡û
>W1710069659
BCUZ01000267
Bacillota
Neobacillus fumarioli NBRC 102428 [BCUZ]
510
436
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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