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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360678 (59 seq.)
>C171083837
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
1145746
1145671
-
Phe
GAA
-
¡û
>C171094249
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
1082968
1082893
-
Phe
GAA
-
¡û
>C171115791
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
4211548
4211623
+
Phe
GAA
-
¡û
>C171115838
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
4111620
4111695
+
Phe
GAA
-
¡û
>WENV181166975
OEIU01005218
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4867
4942
+
Phe
GAA
[ENA]
¡û
>WENV181170758
OEIV010083907
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
676
751
+
Phe
GAA
[ENA]
¡û
>WENV181221638
OFCW01000171
[OFCW] microbial mat metagenome; Microbial Mat
16654
16729
+
Phe
GAA
[ENA]
¡û
>WENV181312229
OFJB01058758
[OFJB] sludge metagenome; sludge
94
19
-
Phe
GAA
[ENA]
¡û
>WENV181401501
OFTX01000473
[OFTX] sludge metagenome; sludge
2111
2036
-
Phe
GAA
[ENA]
¡û
>WENV181882989
OGXI01001056
[OGXI] human gut metagenome; faeces
5667
5742
+
Phe
GAA
[ENA]
¡û
>WENV181929185
OGYO01013051
[OGYO] human gut metagenome; faeces
373
298
-
Phe
GAA
[ENA]
¡û
>WENV181972708
OHAA01002113
[OHAA] human gut metagenome; faeces
10337
10262
-
Phe
GAA
[ENA]
¡û
>WENV183086633
OLJF01063215
[OLJF] metagenome; faeces
263
338
+
Phe
GAA
[ENA]
¡û
>WENV170322012
CESR01100474
[CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
164
237
+
Phe
GAA
[ENA]
¡û
>WENV170492073
CEVQ01117302
[CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
399
326
-
Phe
GAA
[ENA]
¡û
>WENV170553198
CXWK01010830
[CXWK] wastewater metagenome; activated sludge
1742
1667
-
Phe
GAA
[ENA]
¡û
>WENV170556710
CXWL01012412
[CXWL] groundwater metagenome; biofilm material
2451
2526
+
Phe
GAA
[ENA]
¡û
>WENV170573160
FLYJ01001994
[FLYJ] hot springs metagenome; Sediment
2371
2446
+
Phe
GAA
[ENA]
¡û
>WENV170621506
FUWD013061561
[FUWD] metagenome; unknown
1803
1878
+
Phe
GAA
[ENA]
¡û
>WENV170629689
FUWD013277691
[FUWD] metagenome; unknown
1803
1878
+
Phe
GAA
[ENA]
¡û
>C181163943
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
5796103
5796178
+
Phe
GAA
-
¡û
>C181187756
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
5571211
5571136
-
Phe
GAA
-
¡û
>C181187757
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
5522196
5522121
-
Phe
GAA
-
¡û
>W09119197
ACDP01000008
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
7802
7727
-
Phe
GAA
[ENA]
¡û
>W09119243
ACDQ01000010
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
27761
27836
+
Phe
GAA
[ENA]
¡û
>W2010264341
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
1279774
1279849
+
Phe
GAA
[ENA]
¡û
>W2010288970
CABMNL010000001
Betaproteobacteria
Oxalobacter formigenes [CABMNL]
550090
550015
-
Phe
GAA
[ENA]
¡û
>W2010685566
JACEZS010000008
Betaproteobacteria
Duganella sp. FT3S [JACEZS]
8123
8198
+
Phe
GAA
[ENA]
¡û
>W2010685605
JACEZS010000032
Betaproteobacteria
Duganella sp. FT3S [JACEZS]
27414
27339
-
Phe
GAA
[ENA]
¡û
>W2010685684
JACEZT010000020
Betaproteobacteria
Duganella sp. LX20W [JACEZT]
52237
52162
-
Phe
GAA
[ENA]
¡û
>W2010685685
JACEZT010000020
Betaproteobacteria
Duganella sp. LX20W [JACEZT]
9247
9172
-
Phe
GAA
[ENA]
¡û
>W2011580035
SHKT01000004
Betaproteobacteria
Duganella sp. BK054 [SHKT]
20958
21033
+
Phe
GAA
[ENA]
¡û
>W2011580036
SHKT01000004
Betaproteobacteria
Duganella sp. BK054 [SHKT]
80890
80965
+
Phe
GAA
[ENA]
¡û
>W2012081985
VLKV01000021
Betaproteobacteria
Extensimonas vulgaris CGMCC 1.10977 [VLKV]
1633
1708
+
Phe
GAA
[ENA]
¡û
>W2012082025
VLKW01000007
Betaproteobacteria
Massilia flava CGMCC 1.10685 [VLKW]
21100
21175
+
Phe
GAA
[ENA]
¡û
>W2012082026
VLKW01000007
Betaproteobacteria
Massilia flava CGMCC 1.10685 [VLKW]
73693
73768
+
Phe
GAA
[ENA]
¡û
>W2012094185
VMYE01000006
Betaproteobacteria
Extensimonas sp. HX2-24 [VMYE]
39481
39556
+
Phe
GAA
[ENA]
¡û
>W2012123588
VPFC01000085
Betaproteobacteria
Empedobacter haloabium ATCC 31962 [VPFC]
105444
105369
-
Phe
GAA
[ENA]
¡û
>W2012123589
VPFC01000085
Betaproteobacteria
Empedobacter haloabium ATCC 31962 [VPFC]
60504
60429
-
Phe
GAA
[ENA]
¡û
>SRA1053033
SRR035098.322940
454 Sequencing (SRP001819)
283
358
+
Phe
GAA
[SRA]
>SRA1053688
SRR035098.468486
454 Sequencing (SRP001819)
123
48
-
Phe
GAA
[SRA]
>SRA1053810
SRR035098.502534
454 Sequencing (SRP001819)
125
200
+
Phe
GAA
[SRA]
>W2012399391
WNLA01000030
Betaproteobacteria
Duganella ginsengisoli KCTC 42409 [WNLA]
51224
51299
+
Phe
GAA
[ENA]
¡û
>W2012399394
WNLA01000038
Betaproteobacteria
Duganella ginsengisoli KCTC 42409 [WNLA]
20765
20840
+
Phe
GAA
[ENA]
¡û
>W2012399395
WNLA01000038
Betaproteobacteria
Duganella ginsengisoli KCTC 42409 [WNLA]
25181
25256
+
Phe
GAA
[ENA]
¡û
>C201107532
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
1604386
1604461
+
Phe
GAA
-
¡û
>C231399336
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
1207667
1207742
+
Phe
GAA
-
¡û
>C231399407
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
1350899
1350824
-
Phe
GAA
-
¡û
>C231399456
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
1167662
1167587
-
Phe
GAA
-
¡û
>C231399514
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
581500
581425
-
Phe
GAA
-
¡û
>C231399613
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
620472
620397
-
Phe
GAA
-
¡û
>C231399642
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
1765284
1765359
+
Phe
GAA
-
¡û
>C231399691
CP098251
Betaproteobacteria
Oxalobacter sp. JAC-2022 OxK [CP098251]
1649433
1649508
+
Phe
GAA
-
¡û
>C231399741
CP098252
Betaproteobacteria
Oxalobacter sp. JAC-2022 Va3 [CP098252]
1618110
1618185
+
Phe
GAA
-
¡û
>C241114021
CP046904
Betaproteobacteria
Pseudoduganella flava DSM 26639 [CP046904]
4595688
4595613
-
Phe
GAA
-
¡û
>C241114022
CP046904
Betaproteobacteria
Pseudoduganella flava DSM 26639 [CP046904]
4543095
4543020
-
Phe
GAA
-
¡û
>C161040276
CP012157
Betaproteobacteria
Betaproteobacteria bacterium UKL13-2 [CP012157]
515359
515284
-
Phe
GAA
-
¡û
>C161094164
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
5413586
5413661
+
Phe
GAA
-
¡û
>C161094211
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
5499482
5499557
+
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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