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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360765 (19 seq.)
>W131104591
APCS01000084
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
18549
18475
-
Val
TAC
[ENA]
¡û
>W1711743921
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
2851589
2851663
+
Val
TAC
[ENA]
¡û
>W1712080650
NHMK01000009
Deinococcota
Deinococcus indicus [NHMK]
665794
665868
+
Val
TAC
[ENA]
¡û
>C007969
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
564645
564571
-
Val
TAC
[Ensembl]
¡û
>WENV180231906
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
131352
131426
+
Val
TAC
[ENA]
¢þ
>WENV180232915
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
131352
131426
+
Val
TAC
[ENA]
¢þ
>WENV180569733
OCLR01000374
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
33579
33505
-
Val
TAC
[ENA]
¢þ
>WENV180570684
OCLS01000399
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
31888
31814
-
Val
TAC
[ENA]
¢þ
>WENV180571275
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
131352
131426
+
Val
TAC
[ENA]
¢þ
>WENV180573514
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
131352
131426
+
Val
TAC
[ENA]
¢þ
>WENV180639587
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
131352
131426
+
Val
TAC
[ENA]
¢þ
>WENV180640515
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
131352
131426
+
Val
TAC
[ENA]
¢þ
>W141154780
AXLL01000095
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
3124
3198
+
Val
TAC
[ENA]
¡û
>C181196461
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1719618
1719692
+
Val
TAC
-
¡û
>W141561442
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
131644
131718
+
Val
TAC
[ENA]
¡û
>W141702045
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
131529
131603
+
Val
TAC
[ENA]
¡û
>C10105371
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
564645
564571
-
Val
TAC
[Ensembl]
¡û
>C11107298
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
564645
564571
-
Val
TAC
[Ensembl]
¡û
>C161082973
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2160937
2161011
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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