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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360768 (33 seq.)
>W131219100
ATYG01000038
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
19385
19311
-
Asn
GTT
[ENA]
¡û
>W131219101
ATYG01000038
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
19152
19078
-
Asn
GTT
[ENA]
¡û
>C171098281
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
344468
344542
+
Asn
GTT
-
¡û
>C171098282
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
344725
344799
+
Asn
GTT
-
¡û
>W131237158
AUMW01000027
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
51546
51620
+
Asn
GTT
[ENA]
¡û
>W131237173
AUMW01000035
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
21054
20980
-
Asn
GTT
[ENA]
¡û
>C005897
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
2108721
2108647
-
Asn
GTT
[Ensembl]
¡û
>C005898
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
2108480
2108406
-
Asn
GTT
[Ensembl]
¡û
>WENV180296207
OBJA01000067
[OBJA] soil metagenome; sediment, water from around vicinity
74859
74933
+
Asn
GTT
[ENA]
¢þ
>WENV183331144
OLWB01059582
[OLWB] human gut metagenome; faeces
212
286
+
Asn
GTT
[ENA]
¢þ
>WENV170686955
LFRM01170680
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
32423
32349
-
Asn
GTT
[ENA]
¢þ
>WENV170690291
LFRM01333756
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
221
295
+
Asn
GTT
[ENA]
¢þ
>WENV170726734
LSQX01392334
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1725
1799
+
Asn
GTT
[ENA]
¢þ
>W141621715
JJNX02000006
Bacillota
Peptococcaceae bacterium SCADC1_2_3 [JJNX]
52905
52831
-
Asn
GTT
[ENA]
¡û
>W141801427
JPEC01000039
Bacillota
Peptococcaceae bacterium SCADC1_2_3 [JPEC]
4182
4108
-
Asn
GTT
[ENA]
¡û
>W1511430014
JUED01000056
Bacillota
Desulfotomaculum sp. BICA1-6 [JUED]
17175
17249
+
Asn
GTT
[ENA]
¡û
>W1511430015
JUED01000061
Bacillota
Desulfotomaculum sp. BICA1-6 [JUED]
47022
47096
+
Asn
GTT
[ENA]
¡û
>W1511564291
LADP01000029
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
18829
18755
-
Asn
GTT
[ENA]
¡û
>W1511564292
LADP01000033
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
48469
48543
+
Asn
GTT
[ENA]
¡û
>W121010873
AGJQ01000008
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
66130
66204
+
Asn
GTT
[ENA]
¡û
>W121010881
AGJQ01000009
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
93249
93175
-
Asn
GTT
[ENA]
¡û
>C131002633
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
303788
303862
+
Asn
GTT
[Ensembl]
¡û
>C131002641
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
1402569
1402643
+
Asn
GTT
[Ensembl]
¡û
>W1610606292
LFST01000019
Bacillota
Candidatus Fermentithermobacillaceae bacterium DTU015 DTU015 [LFST]
32423
32349
-
Asn
GTT
[ENA]
¡û
>W1710083559
BDJK01000030
Bacillota
Carboxydothermus pertinax [BDJK]
18256
18182
-
Asn
GTT
[ENA]
¡û
>W1710083560
BDJK01000030
Bacillota
Carboxydothermus pertinax [BDJK]
18049
17975
-
Asn
GTT
[ENA]
¡û
>W1710083588
BDJL01000005
Bacillota
Carboxydothermus islandicus [BDJL]
29466
29392
-
Asn
GTT
[ENA]
¡û
>W1710083589
BDJL01000005
Bacillota
Carboxydothermus islandicus [BDJL]
29209
29135
-
Asn
GTT
[ENA]
¡û
>W1710562372
FOOX01000012
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
124966
125040
+
Asn
GTT
[ENA]
¡û
>W1710562384
FOOX01000017
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
68928
68854
-
Asn
GTT
[ENA]
¡û
>W1710574784
FOYM01000005
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
28859
28933
+
Asn
GTT
[ENA]
¡û
>W1710574800
FOYM01000018
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
59670
59744
+
Asn
GTT
[ENA]
¡û
>W1710727579
LFST01000019
Bacillota
Candidatus Fermentithermobacillaceae bacterium DTU015 DTU015 [LFST]
32423
32349
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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