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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.361919 (34 seq.)
>W1710880979
LMSS01000003
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
225240
225167
-
Glu
TTC
[ENA]
¡û
>W1710881046
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
521883
521810
-
Glu
TTC
[ENA]
¡û
>W1711021416
LQZG01000001
Actinomycetota
Janibacter melonis [LQZG]
142275
142348
+
Glu
TTC
[ENA]
¡û
>W1711718009
MTHC01000004
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
153127
153202
+
Glu
TTC
[ENA]
¡û
>C171022244
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
249880
249807
-
Glu
TTC
-
¡û
>C171091499
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
2520670
2520597
-
Glu
TTC
-
¡û
>C171096274
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
237938
237865
-
Glu
TTC
-
¡û
>C171096281
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
795802
795877
+
Glu
TTC
-
¡û
>W131227559
AUFG01000007
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
32882
32955
+
Glu
TTC
[ENA]
¡û
>W141039298
ALWX01000039
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
55850
55923
+
Glu
TTC
[ENA]
¡û
>WENV181375847
OFQZ01004729
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
2441
2366
-
Glu
TTC
[ENA]
¢þ
>WENV183749325
PPFU01150604
[PPFU] hypolithon metagenome; Antarctic Hypolithon
107
180
+
Glu
TTC
[ENA]
¢þ
>C191147711
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
2924425
2924498
+
Glu
TTC
-
¡û
>W1911533124
OKQN01000007
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
153603
153530
-
Glu
TTC
[ENA]
¡û
>W1810364575
PVTI01000029
Actinomycetota
Knoellia remsis ATCC BAA-1496 [PVTI]
31357
31284
-
Glu
TTC
[ENA]
¡û
>C151090440
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
353966
354039
+
Glu
TTC
-
¡û
>W1510061389
CCYJ01000013
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
44874
44949
+
Glu
TTC
[ENA]
¡û
>W1610051266
BBGR01001209
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
359
286
-
Glu
TTC
[ENA]
¡û
>W1610069623
BCSQ01000024
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
14457
14530
+
Glu
TTC
[ENA]
¡û
>W1610069681
BCSR01000027
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
24220
24293
+
Glu
TTC
[ENA]
¡û
>W1610069711
BCSS01000010
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
36913
36840
-
Glu
TTC
[ENA]
¡û
>W1610078175
BDAR01000013
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
12232
12305
+
Glu
TTC
[ENA]
¡û
>W121124411
BAFE01000022
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
7412
7339
-
Glu
TTC
[ENA]
¡û
>W121126447
BAGZ01000008
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
18182
18109
-
Glu
TTC
[ENA]
¡û
>W121126637
BAHD01000028
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
39907
39832
-
Glu
TTC
[ENA]
¡û
>W1610743325
LMSS01000003
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
225240
225167
-
Glu
TTC
[ENA]
¡û
>W1610743392
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
521883
521810
-
Glu
TTC
[ENA]
¡û
>W1610869704
LQZG01000001
Actinomycetota
Janibacter melonis [LQZG]
142275
142348
+
Glu
TTC
[ENA]
¡û
>W1710047665
BBGR01001209
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
359
286
-
Glu
TTC
[ENA]
¡û
>W1710066996
BCSQ01000024
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
14457
14530
+
Glu
TTC
[ENA]
¡û
>W1710067054
BCSR01000027
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
24220
24293
+
Glu
TTC
[ENA]
¡û
>W1710067084
BCSS01000010
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
36913
36840
-
Glu
TTC
[ENA]
¡û
>W1710076734
BDAR01000013
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
12232
12305
+
Glu
TTC
[ENA]
¡û
>W1710588344
FQZG01000055
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
3994
3921
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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