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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.362119 (98 seq.)
>W1711048672
LRPW01000012
Bacillota
Finegoldia magna [LRPW]
2
76
+
Gly
GCC
[ENA]
¡û
>W1711048685
LRPW01000050
Bacillota
Finegoldia magna [LRPW]
127289
127215
-
Gly
GCC
[ENA]
¡û
>C000804
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1843694
1843768
+
Gly
GCC
[Ensembl]
¡û
>C000832
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4446065
4445991
-
Gly
GCC
[Ensembl]
¡û
>C000876
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4429559
4429485
-
Gly
GCC
[Ensembl]
¡û
>WENV180149141
OAUK01019968
[OAUK] human gut metagenome; faeces
194
120
-
Gly
GCC
[ENA]
¢þ
>WENV180172698
OAVX01023371
[OAVX] human gut metagenome; faeces
2
76
+
Gly
GCC
[ENA]
¢þ
>WENV180226826
OBBS01006032
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
205
131
-
Gly
GCC
[ENA]
¢þ
>WENV180227077
OBBT01012764
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
50
124
+
Gly
GCC
[ENA]
¢þ
>WENV180312568
OBJZ01000004
[OBJZ] human gut metagenome; fecal sample
398647
398573
-
Gly
GCC
[ENA]
¢þ
>WENV180312868
OBJZ01001007
[OBJZ] human gut metagenome; fecal sample
2444
2370
-
Gly
GCC
[ENA]
¢þ
>WENV180659828
OCVV010887668
[OCVV] gut metagenome; gut
244
318
+
Gly
GCC
[ENA]
¢þ
>WENV180659831
OCVV010887668
[OCVV] gut metagenome; gut
244
318
+
Gly
GCC
[ENA]
¢þ
>WENV180662478
OCVV011081368
[OCVV] gut metagenome; gut
150
224
+
Gly
GCC
[ENA]
¢þ
>WENV180662481
OCVV011081368
[OCVV] gut metagenome; gut
150
224
+
Gly
GCC
[ENA]
¢þ
>WENV180948115
ODUG01000299
[ODUG] human metagenome; G_DNA_Tongue dorsum
45839
45765
-
Gly
GCC
[ENA]
¢þ
>WENV180948166
ODUG01000356
[ODUG] human metagenome; G_DNA_Tongue dorsum
40845
40771
-
Gly
GCC
[ENA]
¢þ
>WENV180949562
ODUG01021860
[ODUG] human metagenome; G_DNA_Tongue dorsum
1718
1792
+
Gly
GCC
[ENA]
¢þ
>WENV181051905
ODYE01007354
[ODYE] human metagenome; G_DNA_Tongue dorsum
56
130
+
Gly
GCC
[ENA]
¢þ
>WENV181239168
OFFD01000134
[OFFD] mouse gut metagenome; faeces
44482
44556
+
Gly
GCC
[ENA]
¢þ
>WENV181239202
OFFD01000201
[OFFD] mouse gut metagenome; faeces
54508
54434
-
Gly
GCC
[ENA]
¢þ
>WENV181239290
OFFD01000384
[OFFD] mouse gut metagenome; faeces
22098
22024
-
Gly
GCC
[ENA]
¢þ
>WENV181328045
OFLS01000103
[OFLS] metagenome; faeces
52054
51980
-
Gly
GCC
[ENA]
¢þ
>WENV181328125
OFLS01000457
[OFLS] metagenome; faeces
858
784
-
Gly
GCC
[ENA]
¢þ
>WENV181346143
OFML01004853
[OFML] human gut metagenome; human gut
1700
1626
-
Gly
GCC
[ENA]
¢þ
>WENV181800823
OGRZ01000026
[OGRZ] human gut metagenome; fecal sample 1 from infant 2
1253
1327
+
Gly
GCC
[ENA]
¢þ
>WENV181800844
OGRZ01000038
[OGRZ] human gut metagenome; fecal sample 1 from infant 2
102296
102370
+
Gly
GCC
[ENA]
¢þ
>WENV181803986
OGSE01000058
[OGSE] human gut metagenome; fecal sample 3 from infant 2
69527
69601
+
Gly
GCC
[ENA]
¢þ
>WENV181804041
OGSE01000136
[OGSE] human gut metagenome; fecal sample 3 from infant 2
1538
1612
+
Gly
GCC
[ENA]
¢þ
>WENV181805729
OGSJ01000352
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
15517
15591
+
Gly
GCC
[ENA]
¢þ
>WENV181805769
OGSJ01000448
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
1616
1690
+
Gly
GCC
[ENA]
¢þ
>WENV181821272
OGUE01000242
[OGUE] human gut metagenome; fecal sample 1 from infant 5
14697
14623
-
Gly
GCC
[ENA]
¢þ
>WENV181897146
OGXS01036480
[OGXS] human gut metagenome; faeces
486
412
-
Gly
GCC
[ENA]
¢þ
>WENV182403188
OIET01001236
[OIET] human gut metagenome; human gut
7525
7451
-
Gly
GCC
[ENA]
¢þ
>WENV182403364
OIET01003389
[OIET] human gut metagenome; human gut
19
93
+
Gly
GCC
[ENA]
¢þ
>WENV182405333
OIEV01002971
[OIEV] human gut metagenome; human gut
4262
4188
-
Gly
GCC
[ENA]
¢þ
>WENV182405401
OIEV01003973
[OIEV] human gut metagenome; human gut
877
803
-
Gly
GCC
[ENA]
¢þ
>WENV182411889
OIFQ01000773
[OIFQ] human gut metagenome; stool
97
171
+
Gly
GCC
[ENA]
¢þ
>WENV182643794
OJLW01001214
[OJLW] metagenome; surface
8106
8180
+
Gly
GCC
[ENA]
¢þ
>WENV182644879
OJLY01000599
[OJLY] metagenome; surface
4432
4506
+
Gly
GCC
[ENA]
¢þ
>C08004930
AP008971
Bacillota
Finegoldia magna ATCC 29328 [AP008971]
204024
204098
+
Gly
GCC
[Ensembl]
¡û
>C08004958
AP008971
Bacillota
Finegoldia magna ATCC 29328 [AP008971]
750649
750723
+
Gly
GCC
[Ensembl]
¡û
>WENV182813988
OJYG01001804
[OJYG] human gut metagenome; human gut
1331
1405
+
Gly
GCC
[ENA]
¢þ
>WENV182857528
OKNX01006038
[OKNX] human gut metagenome; human gut
806
880
+
Gly
GCC
[ENA]
¢þ
>WENV182960990
OKWK01000071
[OKWK] human gut metagenome; stool
13486
13412
-
Gly
GCC
[ENA]
¢þ
>WENV182961102
OKWK01000170
[OKWK] human gut metagenome; stool
59391
59317
-
Gly
GCC
[ENA]
¢þ
>WENV183709503
PDWI01029180
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4478
4404
-
Gly
GCC
[ENA]
¢þ
>W141402250
JDVC01000018
Bacillota
Finegoldia magna ALB8 [JDVC]
513
587
+
Gly
GCC
[ENA]
¡û
>W141402271
JDVC01000043
Bacillota
Finegoldia magna ALB8 [JDVC]
203478
203404
-
Gly
GCC
[ENA]
¡û
>WENV170695846
LGVE01182500
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
8868
8794
-
Gly
GCC
[ENA]
¢þ
>WENV170695907
LGVE01185773
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
143
69
-
Gly
GCC
[ENA]
¢þ
>WENV170699887
LGVF01677974
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
143
69
-
Gly
GCC
[ENA]
¢þ
>C191213965
LR134523
Bacillota
Peptoniphilus ivorii NCTC13079 [LR134523]
976072
975998
-
Gly
GCC
-
¡û
>C191213975
LR134523
Bacillota
Peptoniphilus ivorii NCTC13079 [LR134523]
956551
956477
-
Gly
GCC
-
¡û
>C191219501
LR215983
Bacillota
Eubacterium limosum [LR215983]
345555
345629
+
Gly
GCC
-
¡û
>C191219537
LR215983
Bacillota
Eubacterium limosum [LR215983]
2480754
2480680
-
Gly
GCC
-
¡û
>W1910211418
FMDO01000007
Bacillota
Proteiniborus sp. DW1 [FMDO]
231653
231727
+
Gly
GCC
[ENA]
¡û
>W1910211432
FMDO01000021
Bacillota
Proteiniborus sp. DW1 [FMDO]
17564
17638
+
Gly
GCC
[ENA]
¡û
>W1910211434
FMDO01000022
Bacillota
Proteiniborus sp. DW1 [FMDO]
12
86
+
Gly
GCC
[ENA]
¡û
>W1910874056
NDYB01000006
Bacillota
Finegoldia magna T151023 [NDYB]
235
309
+
Gly
GCC
[ENA]
¡û
>W1910874084
NDYB01000016
Bacillota
Finegoldia magna T151023 [NDYB]
93859
93933
+
Gly
GCC
[ENA]
¡û
>W1910874147
NDYD01000005
Bacillota
Finegoldia magna 12T306 [NDYD]
1500
1574
+
Gly
GCC
[ENA]
¡û
>W1910874171
NDYD01000014
Bacillota
Finegoldia magna 12T306 [NDYD]
5714
5788
+
Gly
GCC
[ENA]
¡û
>W1910874188
NDYE01000004
Bacillota
Finegoldia magna 12T273 [NDYE]
1267
1341
+
Gly
GCC
[ENA]
¡û
>W1910874212
NDYE01000012
Bacillota
Finegoldia magna 12T273 [NDYE]
40771
40845
+
Gly
GCC
[ENA]
¡û
>W1910874242
NDYF01000009
Bacillota
Finegoldia magna 12T272 [NDYF]
79374
79448
+
Gly
GCC
[ENA]
¡û
>W1910874258
NDYF01000013
Bacillota
Finegoldia magna 12T272 [NDYF]
339239
339165
-
Gly
GCC
[ENA]
¡û
>W1910874263
NDYG01000002
Bacillota
Finegoldia magna 09T494 [NDYG]
138
212
+
Gly
GCC
[ENA]
¡û
>W1910874293
NDYG01000007
Bacillota
Finegoldia magna 09T494 [NDYG]
15333
15407
+
Gly
GCC
[ENA]
¡û
>W1910874305
NDYH01000008
Bacillota
Finegoldia magna 09T408 [NDYH]
138
212
+
Gly
GCC
[ENA]
¡û
>W1910874331
NDYH01000018
Bacillota
Finegoldia magna 09T408 [NDYH]
40722
40796
+
Gly
GCC
[ENA]
¡û
>W1910874346
NDYI01000002
Bacillota
Finegoldia magna 08T492 [NDYI]
1460
1534
+
Gly
GCC
[ENA]
¡û
>W1910874368
NDYI01000010
Bacillota
Finegoldia magna 08T492 [NDYI]
102459
102533
+
Gly
GCC
[ENA]
¡û
>W1910874378
NDYJ01000005
Bacillota
Finegoldia magna 07T609 [NDYJ]
138
212
+
Gly
GCC
[ENA]
¡û
>W1910874403
NDYJ01000013
Bacillota
Finegoldia magna 07T609 [NDYJ]
132840
132914
+
Gly
GCC
[ENA]
¡û
>W1911596409
PNHD01000001
Bacillota
Finegoldia magna UMB0115 [PNHD]
122164
122090
-
Gly
GCC
[ENA]
¡û
>W1911596428
PNHD01000015
Bacillota
Finegoldia magna UMB0115 [PNHD]
1335
1409
+
Gly
GCC
[ENA]
¡û
>W1810871710
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
14302
14376
+
Gly
GCC
[ENA]
¡û
>W1810871719
QUDF01000004
Bacillota
Eubacterium sp. AM05-23 [QUDF]
56376
56450
+
Gly
GCC
[ENA]
¡û
>W10125924
AECM01000010
Bacillota
Finegoldia magna ACS-171-V-Col3 [AECM]
56385
56311
-
Gly
GCC
[ENA]
¡û
>W10125947
AECM01000025
Bacillota
Finegoldia magna ACS-171-V-Col3 [AECM]
160347
160273
-
Gly
GCC
[ENA]
¡û
>W10126988
AEDP01000018
Bacillota
Finegoldia magna BVS033A4 [AEDP]
11980
11906
-
Gly
GCC
[ENA]
¡û
>W10126998
AEDP01000044
Bacillota
Finegoldia magna BVS033A4 [AEDP]
50100
50026
-
Gly
GCC
[ENA]
¡û
>W11132855
AECM01000010
Bacillota
Finegoldia magna ACS-171-V-Col3 [AECM]
56385
56311
-
Gly
GCC
[ENA]
¡û
>W11132878
AECM01000025
Bacillota
Finegoldia magna ACS-171-V-Col3 [AECM]
160347
160273
-
Gly
GCC
[ENA]
¡û
>W11134249
AEDP01000018
Bacillota
Finegoldia magna BVS033A4 [AEDP]
11980
11906
-
Gly
GCC
[ENA]
¡û
>W11134259
AEDP01000044
Bacillota
Finegoldia magna BVS033A4 [AEDP]
50100
50026
-
Gly
GCC
[ENA]
¡û
>W11174038
AFUI01000016
Bacillota
Finegoldia magna SY403409CC001050417 [AFUI]
61582
61508
-
Gly
GCC
[ENA]
¡û
>W11174049
AFUI01000019
Bacillota
Finegoldia magna SY403409CC001050417 [AFUI]
31449
31375
-
Gly
GCC
[ENA]
¡û
>C121003916
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3338145
3338071
-
Gly
GCC
[Ensembl]
¡û
>C121003928
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
2821818
2821744
-
Gly
GCC
[Ensembl]
¡û
>W1610095209
CYUK01000003
Bacillota
Clostridiales bacterium SIT11 [CYUK]
589412
589338
-
Gly
GCC
[ENA]
¡û
>W1610889801
LRPW01000012
Bacillota
Finegoldia magna [LRPW]
2
76
+
Gly
GCC
[ENA]
¡û
>W1610889814
LRPW01000050
Bacillota
Finegoldia magna [LRPW]
127289
127215
-
Gly
GCC
[ENA]
¡û
>W1710525026
FNJF01000003
Bacillota
Eubacterium maltosivorans limosum [FNJF]
311
385
+
Gly
GCC
[ENA]
¡û
>W1710525068
FNJF01000063
Bacillota
Eubacterium maltosivorans limosum [FNJF]
370
296
-
Gly
GCC
[ENA]
¡û
>W1710530512
FNOU01000006
Bacillota
Eubacterium barkeri [FNOU]
13567
13641
+
Gly
GCC
[ENA]
¡û
>W1710530521
FNOU01000013
Bacillota
Eubacterium barkeri [FNOU]
23409
23483
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK