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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.362169 (11 seq.)
>W1711080783
LSRH01000021
Actinomycetota
Tsukamurella pulmonis [LSRH]
466763
466688
-
Lys
TTT
[ENA]
¡û
>C171022203
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
285710
285785
+
Lys
TTT
-
¡û
>WENV183718514
PDWJ01004540
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9259
9333
+
Lys
TTT
[ENA]
¢þ
>C191159943
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
506732
506658
-
Lys
TTT
-
¡û
>C191182504
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
414135
414062
-
Lys
TTT
-
¡û
>C191193456
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
2408629
2408703
+
Lys
TTT
-
¡û
>W09109310
ABUD01000009
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
43068
43143
+
Lys
TTT
[ENA]
¡û
>W1810573653
QEKW01000023
Actinomycetota
Actinomycetospora cinnamomea DSM 45771 [QEKW]
4453
4379
-
Lys
TTT
[ENA]
¡û
>C10108077
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
676448
676373
-
Lys
TTT
[Ensembl]
¡û
>W1610919650
LSRH01000021
Actinomycetota
Tsukamurella pulmonis [LSRH]
466763
466688
-
Lys
TTT
[ENA]
¡û
>W1710527702
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
1054382
1054457
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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