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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.363280 (20 seq.)
>W1711317482
MAXI01000045
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
22802
22878
+
Asp
GTC
[ENA]
¡û
>W1711317498
MAXI01000116
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
1676
1752
+
Asp
GTC
[ENA]
¡û
>W131161023
AQXE01000011
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
151
75
-
Asp
GTC
[ENA]
¡û
>W131161027
AQXE01000023
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
338
262
-
Asp
GTC
[ENA]
¡û
>W131224790
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
38865
38941
+
Asp
GTC
[ENA]
¡û
>W131224792
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
44869
44945
+
Asp
GTC
[ENA]
¡û
>W131224811
AUDB01000005
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
77882
77958
+
Asp
GTC
[ENA]
¡û
>WENV170699400
LGVF01544743
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
513
437
-
Asp
GTC
[ENA]
¢þ
>W141779011
JONL01000005
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
185750
185826
+
Asp
GTC
[ENA]
¡û
>W141779013
JONL01000005
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
201486
201562
+
Asp
GTC
[ENA]
¡û
>C141011905
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1732499
1732575
+
Asp
GTC
-
¡û
>C141011907
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1738503
1738579
+
Asp
GTC
-
¡û
>C141011958
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1563596
1563520
-
Asp
GTC
-
¡û
>W1610046076
BBCB01000132
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4934
5010
+
Asp
GTC
[ENA]
¡û
>W1610046081
BBCB01000159
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
589
513
-
Asp
GTC
[ENA]
¡û
>C131018087
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1732499
1732575
+
Asp
GTC
[Ensembl]
¡û
>C131018089
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1738503
1738579
+
Asp
GTC
[Ensembl]
¡û
>C131018140
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1563596
1563520
-
Asp
GTC
[Ensembl]
¡û
>W1710042872
BBCB01000132
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4934
5010
+
Asp
GTC
[ENA]
¡û
>W1710042877
BBCB01000159
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
589
513
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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