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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.363280 (20 seq.)
>WENV180102951
OAOZ01066047
[OAOZ] marine metagenome; ENVO:00002010
180
104
-
Arg
TCG
[ENA]
¡û
>WENV180390880
OBPL01066934
[OBPL] marine metagenome; Sterivex filter
199
275
+
Arg
TCG
[ENA]
¡û
>WENV180395568
OBPT01044716
[OBPT] marine metagenome; ENVO:00002010 seawater
453
377
-
Arg
TCG
[ENA]
¡û
>WENV180590255
OCOS01183230
[OCOS] marine metagenome; Sterile flask
8
84
+
Arg
TCG
[ENA]
¡û
>WENV180650371
OCSY01013418
[OCSY] marine metagenome; 30 L Plastic container
203
279
+
Arg
TCG
[ENA]
¡û
>WENV182545284
OJBN01000583
[OJBN] seawater metagenome; Sea water
7217
7141
-
Arg
TCG
[ENA]
¡û
>WENV182550119
OJBZ01003907
[OJBZ] seawater metagenome; Sea water
2482
2558
+
Arg
TCG
[ENA]
¡û
>WENV182551998
OJCJ01002666
[OJCJ] seawater metagenome; Sea water
787
863
+
Arg
TCG
[ENA]
¡û
>WENV182554754
OJCW01007378
[OJCW] seawater metagenome; Sea water
901
977
+
Arg
TCG
[ENA]
¡û
>WENV182556100
OJDG01000219
[OJDG] seawater metagenome; Sea water
14553
14477
-
Arg
TCG
[ENA]
¡û
>WENV182556954
OJDI01000072
[OJDI] seawater metagenome; Sea water
46594
46518
-
Arg
TCG
[ENA]
¡û
>WENV182560178
OJDT01003463
[OJDT] seawater metagenome; Sea water
1529
1605
+
Arg
TCG
[ENA]
¡û
>WENV182565815
OJEH01057588
[OJEH] seawater metagenome; Sea water
16
92
+
Arg
TCG
[ENA]
¡û
>WENV182566044
OJEI01014292
[OJEI] seawater metagenome; Sea water
310
386
+
Arg
TCG
[ENA]
¡û
>WENV182566294
OJEJ01007899
[OJEJ] seawater metagenome; Sea water
742
818
+
Arg
TCG
[ENA]
¡û
>WENV182575315
OJFU01005261
[OJFU] seawater metagenome; Sea water
1121
1045
-
Arg
TCG
[ENA]
¡û
>WENV182579135
OJGS01000850
[OJGS] seawater metagenome; Sea water
8394
8318
-
Arg
TCG
[ENA]
¡û
>WENV182580874
OJGW01022449
[OJGW] seawater metagenome; Sea water
879
955
+
Arg
TCG
[ENA]
¡û
>WENV183057740
OLHM01002019
[OLHM] seawater metagenome; Sea water
276
200
-
Arg
TCG
[ENA]
¡û
>WENV183060718
OLHY01002683
[OLHY] seawater metagenome; Sea water
2614
2690
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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