This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366237 (28 seq.)
>W141233125
BAVL01000013
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
143004
143076
+
Asn
GTT
[ENA]
¡û
>W141261517
CCAV010000004
Bacteroidota
Chryseobacterium oranimense G311 [CCAV]
290857
290785
-
Asn
GTT
[ENA]
¡û
>WENV183741609
PJUG01000187
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
24192
24120
-
Asn
GTT
[ENA]
¢þ
>WENV183742127
PJUH01000390
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
663
591
-
Asn
GTT
[ENA]
¢þ
>WENV183742685
PJUI01000058
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
95846
95774
-
Asn
GTT
[ENA]
¢þ
>C181092422
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
147590
147662
+
Asn
GTT
-
¡û
>C191111347
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
247769
247697
-
Asn
GTT
-
¡û
>C191112930
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3773449
3773377
-
Asn
GTT
-
¡û
>C191115528
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
377341
377269
-
Asn
GTT
-
¡û
>C191115598
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
3861268
3861196
-
Asn
GTT
-
¡û
>C191116213
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4297026
4297098
+
Asn
GTT
-
¡û
>C191218932
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4037944
4038016
+
Asn
GTT
-
¡û
>W141809477
JPRN01000007
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
197424
197352
-
Asn
GTT
[ENA]
¡û
>W1910184832
BJTC01000006
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
209462
209390
-
Asn
GTT
[ENA]
¡û
>W1910808730
MUGP01000002
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
50621
50693
+
Asn
GTT
[ENA]
¡û
>W1911680515
QICX01000016
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
18274
18346
+
Asn
GTT
[ENA]
¡û
>W1911701747
QNVS01000062
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
1716
1788
+
Asn
GTT
[ENA]
¡û
>W1911701935
QNVV01000004
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
93279
93207
-
Asn
GTT
[ENA]
¡û
>W1810234082
PPED02000006
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
109356
109284
-
Asn
GTT
[ENA]
¡û
>W1510072589
CDHM01000004
Bacteroidota
Chryseobacterium oranimense G311 [CDHM]
290857
290785
-
Asn
GTT
[ENA]
¡û
>W1511432050
JUGG01000008
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
190497
190571
+
Asn
GTT
[ENA]
¡û
>W1511432596
JUGP01000008
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
157913
157841
-
Asn
GTT
[ENA]
¡û
>C161084473
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
1077133
1077059
-
Asn
GTT
[Ensembl]
¡û
>W1610205668
FCNN01000197
Bacteroidota
Chryseobacterium indologenes [FCNN]
16225
16153
-
Asn
GTT
[ENA]
¡û
>W1710207169
FCNN01000197
Bacteroidota
Chryseobacterium indologenes [FCNN]
16225
16153
-
Asn
GTT
[ENA]
¡û
>W1710565781
FORL01000008
Bacteroidota
Chryseobacterium indologenes [FORL]
110931
110859
-
Asn
GTT
[ENA]
¡û
>W1710582261
FPKW01000014
Bacteroidota
Chryseobacterium limigenitum [FPKW]
15564
15638
+
Asn
GTT
[ENA]
¡û
>W1710583905
FQVE01000002
Bacteroidota
Chryseobacterium vrystaatense YR203 [FQVE]
156651
156723
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK