This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366330 (87 seq.)
>W1710870312
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
413504
413432
-
Gln
CTG
[ENA]
¡û
>W1710872347
LMLX01000003
Actinomycetota
Agreia sp. Leaf244 [LMLX]
332640
332568
-
Gln
CTG
[ENA]
¡û
>W1710873984
LMNF01000003
Actinomycetota
Agreia sp. Leaf283 [LMNF]
99597
99669
+
Gln
CTG
[ENA]
¡û
>W1710875742
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
834316
834388
+
Gln
CTG
[ENA]
¡û
>W1711018585
LQXA01000061
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
43471
43543
+
Gln
CTG
[ENA]
¡û
>W1711357198
MDHB01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
223570
223498
-
Gln
CTG
[ENA]
¡û
>W1711357210
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
1248566
1248638
+
Gln
CTG
[ENA]
¡û
>W1711357262
MDHD01000132
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
9919
9847
-
Gln
CTG
[ENA]
¡û
>W1711357335
MDHE01000461
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
3315
3243
-
Gln
CTG
[ENA]
¡û
>W1711357342
MDHF01000032
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
13418
13346
-
Gln
CTG
[ENA]
¡û
>W1711357398
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
2826283
2826355
+
Gln
CTG
[ENA]
¡û
>W1711357451
MDHH01000003
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
362939
362867
-
Gln
CTG
[ENA]
¡û
>W1711357479
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
821579
821651
+
Gln
CTG
[ENA]
¡û
>W1711357524
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
1126713
1126785
+
Gln
CTG
[ENA]
¡û
>W1711357578
MDHK01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
276330
276258
-
Gln
CTG
[ENA]
¡û
>W1711357614
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
1278005
1278077
+
Gln
CTG
[ENA]
¡û
>W1711357659
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
1258825
1258897
+
Gln
CTG
[ENA]
¡û
>W1711360698
MDJW01000007
Actinomycetota
Clavibacter michiganensis [MDJW]
428716
428644
-
Gln
CTG
[ENA]
¡û
>W1711360733
MDJX01000060
Actinomycetota
Clavibacter michiganensis [MDJX]
13408
13480
+
Gln
CTG
[ENA]
¡û
>W1711360835
MDJZ01000005
Actinomycetota
Clavibacter michiganensis [MDJZ]
144606
144534
-
Gln
CTG
[ENA]
¡û
>W1711386879
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
1615465
1615537
+
Gln
CTG
[ENA]
¡û
>W131208623
ATIA01000005
Actinomycetota
Leifsonia rubra CMS 76R [ATIA]
68346
68420
+
Gln
CTG
[ENA]
¡û
>W1711505534
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
2208434
2208506
+
Gln
CTG
[ENA]
¡û
>C006141
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
1270326
1270397
+
Gln
CTG
[Ensembl]
¡û
>w013982
AAOB01000013
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
49951
49880
-
Gln
CTG
[ENA]
¡û
>WENV180017272
FSWR01000043
[FSWR] metagenome; soil
4433
4507
+
Gln
CTG
[ENA]
¢þ
>WENV180017643
FSXL01000180
[FSXL] metagenome; soil
7495
7569
+
Gln
CTG
[ENA]
¢þ
>WENV180017822
FSXQ01003668
[FSXQ] metagenome; soil
57213
57287
+
Gln
CTG
[ENA]
¢þ
>WENV180023899
FTIF01003635
[FTIF] metagenome; soil
2160
2086
-
Gln
CTG
[ENA]
¢þ
>WENV180024074
FTIF01025356
[FTIF] metagenome; soil
7577
7651
+
Gln
CTG
[ENA]
¢þ
>WENV180028958
FTJI01000157
[FTJI] metagenome; soil
4738
4810
+
Gln
CTG
[ENA]
¢þ
>WENV180029228
FTJI01231350
[FTJI] metagenome; soil
281
353
+
Gln
CTG
[ENA]
¢þ
>WENV180029252
FTJI01274424
[FTJI] metagenome; soil
307
379
+
Gln
CTG
[ENA]
¢þ
>WENV180030915
FTJN01459821
[FTJN] metagenome; soil
57
129
+
Gln
CTG
[ENA]
¢þ
>WENV180034483
FTKR01000155
[FTKR] metagenome; soil
4738
4810
+
Gln
CTG
[ENA]
¢þ
>WENV180034745
FTKR01223776
[FTKR] metagenome; soil
281
353
+
Gln
CTG
[ENA]
¢þ
>WENV180034755
FTKR01242221
[FTKR] metagenome; soil
307
379
+
Gln
CTG
[ENA]
¢þ
>WENV180036187
FTLB01594730
[FTLB] metagenome; soil
103
177
+
Gln
CTG
[ENA]
¢þ
>WENV180304612
OBJI01177028
[OBJI] soil metagenome; soil
94
22
-
Gln
CTG
[ENA]
¢þ
>WENV180344546
OBLL01032616
[OBLL] soil metagenome; soil
122
50
-
Gln
CTG
[ENA]
¢þ
>WENV181222536
OFDC01000005
[OFDC] hot springs metagenome; Water
380968
380896
-
Gln
CTG
[ENA]
¢þ
>W141212797
AZQZ01000045
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
964688
964616
-
Gln
CTG
[ENA]
¡û
>C08003545
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
1503838
1503910
+
Gln
CTG
[Ensembl]
¡û
>C181048897
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
2193381
2193309
-
Gln
CTG
-
¡û
>C181048919
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
982345
982417
+
Gln
CTG
-
¡û
>C191139345
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
1125165
1125093
-
Gln
CTG
-
¡û
>W1910839759
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
2450349
2450277
-
Gln
CTG
[ENA]
¡û
>W1910839803
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
3089704
3089632
-
Gln
CTG
[ENA]
¡û
>W1910857494
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
912500
912572
+
Gln
CTG
[ENA]
¡û
>W1910857538
NBXA01000007
Actinomycetota
Subtercola boreus P27444 [NBXA]
224355
224427
+
Gln
CTG
[ENA]
¡û
>W1910857582
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
275987
276059
+
Gln
CTG
[ENA]
¡û
>W1910857626
NBXC01000008
Actinomycetota
Subtercola boreus P27924 [NBXC]
270067
270139
+
Gln
CTG
[ENA]
¡û
>W1910857668
NBXD01000007
Actinomycetota
Subtercola boreus P27979 [NBXD]
294290
294362
+
Gln
CTG
[ENA]
¡û
>W1910857712
NBXE01000008
Actinomycetota
Subtercola boreus P28004 [NBXE]
269957
270029
+
Gln
CTG
[ENA]
¡û
>W1911497867
OCST01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
634648
634722
+
Gln
CTG
[ENA]
¡û
>W1911748131
QWDZ01000004
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
19836
19764
-
Gln
CTG
[ENA]
¡û
>W1911748172
QWEA01000006
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
14018
13946
-
Gln
CTG
[ENA]
¡û
>W1911748239
QWEB01000101
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
3218
3290
+
Gln
CTG
[ENA]
¡û
>W1911748269
QWEC01000030
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
11623
11551
-
Gln
CTG
[ENA]
¡û
>W1911748307
QWED01000007
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
4646
4574
-
Gln
CTG
[ENA]
¡û
>W1911748359
QWEE01000040
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
4226
4298
+
Gln
CTG
[ENA]
¡û
>W1911749566
QWGS01000019
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
11286
11358
+
Gln
CTG
[ENA]
¡û
>W1911749617
QWGT01000020
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
11564
11636
+
Gln
CTG
[ENA]
¡û
>W1911749660
QWGU01000040
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
9059
8987
-
Gln
CTG
[ENA]
¡û
>W1911749700
QWGV01000021
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
4308
4380
+
Gln
CTG
[ENA]
¡û
>W1810090192
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
1109854
1109926
+
Gln
CTG
[ENA]
¡û
>W1810277247
PSTR01000009
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
64359
64431
+
Gln
CTG
[ENA]
¡û
>W1810277271
PSTS01000003
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
124150
124222
+
Gln
CTG
[ENA]
¡û
>W1810277411
PSTV01000013
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
64414
64486
+
Gln
CTG
[ENA]
¡û
>W1810277457
PSTW01000015
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
64572
64644
+
Gln
CTG
[ENA]
¡û
>W1810282003
PSXW01000015
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
74075
74147
+
Gln
CTG
[ENA]
¡û
>W1810364704
PVTL01000003
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
352172
352244
+
Gln
CTG
[ENA]
¡û
>W1810657169
QJHB01000008
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
151065
150991
-
Gln
CTG
[ENA]
¡û
>W1810860781
QTTK01000002
Actinomycetota
Clavibacter sp. 199 [QTTK]
30869
30941
+
Gln
CTG
[ENA]
¡û
>C151075634
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
913962
914034
+
Gln
CTG
[Ensembl]
¡û
>C151095696
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
1075120
1075192
+
Gln
CTG
-
¡û
>W1511570080
LAKL01000013
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
43164
43236
+
Gln
CTG
[ENA]
¡û
>W121043558
AHWA01000004
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
188980
188906
-
Gln
CTG
[ENA]
¡û
>C131019528
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
1110218
1110290
+
Gln
CTG
[Ensembl]
¡û
>W1610732658
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
413504
413432
-
Gln
CTG
[ENA]
¡û
>W1610734693
LMLX01000003
Actinomycetota
Agreia sp. Leaf244 [LMLX]
332640
332568
-
Gln
CTG
[ENA]
¡û
>W1610736330
LMNF01000003
Actinomycetota
Agreia sp. Leaf283 [LMNF]
99597
99669
+
Gln
CTG
[ENA]
¡û
>W1610738088
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
834316
834388
+
Gln
CTG
[ENA]
¡û
>W1610867061
LQXA01000061
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
43471
43543
+
Gln
CTG
[ENA]
¡û
>W1710602504
FUYG01000004
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
329502
329574
+
Gln
CTG
[ENA]
¡û
>W1710608518
FXAY01000001
Actinomycetota
Agreia pratensis [FXAY]
276725
276653
-
Gln
CTG
[ENA]
¡û
>W1710609287
FXWI01000001
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
621746
621818
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK