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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366501 (15 seq.)
>W1711583002
MNWP01000020
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
122332
122258
-
Thr
TGT
[ENA]
¡û
>WENV183666623
ORJL010569007
[ORJL] groundwater metagenome; groundwater
5843
5917
+
Thr
TGT
[ENA]
¢þ
>WENV170557296
CXWL01023235
[CXWL] groundwater metagenome; biofilm material
1533
1607
+
Thr
TGT
[ENA]
¢þ
>WENV170653665
JRYJ01028080
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
451
525
+
Thr
TGT
[ENA]
¢þ
>WENV170654198
JRYK01027131
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
1429
1355
-
Thr
TGT
[ENA]
¢þ
>W1910717089
MFXS01000026
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_55_13 [MFXS]
1270
1344
+
Thr
TGT
[ENA]
¡û
>W1910717158
MFXU01000014
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_51_15 [MFXU]
12060
11986
-
Thr
TGT
[ENA]
¡û
>W1910717344
MFXZ01000037
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_12_FULL_55_11 [MFXZ]
1760
1834
+
Thr
TGT
[ENA]
¡û
>W1910717370
MFYA01000002
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_51_18 [MFYA]
52069
51995
-
Thr
TGT
[ENA]
¡û
>W1910717497
MFYD01000031
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_51_10 [MFYD]
22793
22719
-
Thr
TGT
[ENA]
¡û
>C161050448
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
1109724
1109798
+
Thr
TGT
-
¡û
>C161050492
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
1109879
1109953
+
Thr
TGT
-
¡û
>C161050536
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
1109810
1109884
+
Thr
TGT
-
¡û
>C161050580
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
1109603
1109677
+
Thr
TGT
-
¡û
>C161050624
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
1109878
1109952
+
Thr
TGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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