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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366754 (15 seq.)
>C171033880
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
5321214
5321142
-
Gln
CTG
-
¡û
>C171045486
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
6106547
6106475
-
Gln
CTG
-
¡û
>C171045533
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
6204861
6204789
-
Gln
CTG
-
¡û
>W131158748
AQUL01000001
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
6447068
6447140
+
Gln
CTG
[ENA]
¡û
>WENV180018027
FSXZ01002309
[FSXZ] metagenome; soil
1700
1772
+
Gln
CTG
[ENA]
¢þ
>WENV180034889
FTKS01012771
[FTKS] metagenome; soil
422
350
-
Gln
CTG
[ENA]
¢þ
>W141151736
AXBH01000003
Actinomycetota
Amycolatopsis thermoflava N1165 [AXBH]
4169502
4169430
-
Gln
CTG
[ENA]
¡û
>W141201010
AZAN01000002
Actinomycetota
Actinospica robiniae DSM 44927 [AZAN]
6605261
6605333
+
Gln
CTG
[ENA]
¡û
>C181067266
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
5609672
5609600
-
Gln
CTG
-
¡û
>W1911075197
NMUK01000072
Actinomycetota
Amycolatopsis sp. KNN50.9b [NMUK]
3814
3742
-
Gln
CTG
[ENA]
¡û
>W1810254753
PQHW01000006
Actinomycetota
Amycolatopsis thermalba NRRL B-24845 [PQHW]
68625
68553
-
Gln
CTG
[ENA]
¡û
>W1810254813
PQHX01000011
Actinomycetota
Amycolatopsis thermalba 50.9b [PQHX]
68625
68553
-
Gln
CTG
[ENA]
¡û
>W1810254879
PQHY01000047
Actinomycetota
Amycolatopsis ruanii 49.3e [PQHY]
8716
8644
-
Gln
CTG
[ENA]
¡û
>C151044209
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
1553985
1554057
+
Gln
CTG
[Ensembl]
¡û
>W11176345
AFWY01000007
Actinomycetota
Amycolatopsis sp. ATCC 39116 [AFWY]
802952
802880
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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