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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.367115 (13 seq.)
>W1712002242
NEED01000071
Cyanobacteriota
unicellular cyanobacterium SU2 [NEED]
28798
28869
+
Gly
CCC
[ENA]
¡û
>w023452
AAXW01000016
Cyanobacteriota
Crocosphaera chwakensis CCY0110 [AAXW]
57393
57319
-
Gly
CCC
[ENA]
¡û
>W08008953
ABLR01000016
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
53024
53095
+
Gly
CCC
[ENA]
¡û
>W08011335
ABVE01000001
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
592759
592830
+
Gly
CCC
[ENA]
¡û
>C08003984
CP000806
Cyanobacteriota
Crocosphaera subtropica ATCC 51142 [CP000806, CP000807]
1462375
1462304
-
Gly
CCC
[Ensembl]
¡û
>WENV183702646
PDVI01012909
[PDVI] alkali sediment metagenome; glacial lake sediment
573
502
-
Gly
CCC
[ENA]
¢þ
>C09103633
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
3114559
3114488
-
Gly
CCC
[Ensembl]
¡û
>W1911638276
PVWJ01000018
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
16376
16447
+
Gly
CCC
[ENA]
¡û
>W1810271982
PRLH01000188
Cyanobacteriota
Cyanothece sp. BG0011 [PRLH]
16729
16800
+
Gly
CCC
[ENA]
¡û
>C10104712
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
3182224
3182295
+
Gly
CCC
[Ensembl]
¡û
>C11106741
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
2301493
2301422
-
Gly
CCC
[Ensembl]
¡û
>C11106785
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
2301493
2301422
-
Gly
CCC
[Ensembl]
¡û
>W11181449
AGJC01000002
Cyanobacteriota
Crocosphaera subtropica ATCC 51472 [AGJC]
363565
363494
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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