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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.367342 (14 seq.)
>C000567
CP000251
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [CP000251]
657692
657618
-
Val
TAC
[Ensembl]
¡û
>w022428
AAWM01000003
Myxococcota
Anaeromyxobacter sp. Fw109-5 [AAWM]
531496
531420
-
Val
TAC
[ENA]
¡û
>WENV180311583
OBJT01391126
[OBJT] soil metagenome; soil
108
37
-
Val
TAC
[ENA]
¢þ
>WENV180354310
OBLQ011592206
[OBLQ] soil metagenome; soil
180
106
-
Val
TAC
[ENA]
¢þ
>W08007433
ABKC01000002
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [ABKC]
126674
126748
+
Val
TAC
[ENA]
¡û
>C08000669
CP000769
Myxococcota
Anaeromyxobacter sp. Fw109-5 [CP000769]
688875
688799
-
Val
TAC
[Ensembl]
¡û
>C08000716
CP001131
Myxococcota
Anaeromyxobacter sp. K [CP001131]
680447
680376
-
Val
TAC
[Ensembl]
¡û
>W09101942
AAHD01000008
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [AAHD]
138700
138626
-
Val
TAC
[ENA]
¡û
>W09107245
ABHX01000002
Myxococcota
Anaeromyxobacter sp. K [ABHX]
136544
136470
-
Val
TAC
[ENA]
¡û
>C09100341
CP001359
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [CP001359]
666666
666592
-
Val
TAC
[Ensembl]
¡û
>W1510006477
BAZG01000009
Myxococcota
Anaeromyxobacter sp. PSR-1 [BAZG]
17491
17565
+
Val
TAC
[ENA]
¡û
>C11119124
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
7484903
7484974
+
Val
TAC
[Ensembl]
¡û
>W1710544116
FOAP01000007
Myxococcota
Stigmatella aurantiaca [FOAP]
427864
427935
+
Val
TAC
[ENA]
¡û
>W1710554339
FOIJ01000002
Myxococcota
Stigmatella erecta [FOIJ]
112488
112559
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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