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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.369489 (87 seq.)
>WENV180000792
FLNV01002061
[FLNV] bioreactor metagenome; Moose rumen
46869
46941
+
Arg
CCT
[ENA]
¡û
>WENV180000842
FLNV01002300
[FLNV] bioreactor metagenome; Moose rumen
13021
12949
-
Arg
CCT
[ENA]
¡û
>WENV180001174
FLNX01000131
[FLNX] bioreactor metagenome; Moose rumen
4530
4457
-
Arg
CCT
[ENA]
¡û
>WENV180001603
FLNX01002747
[FLNX] bioreactor metagenome; Moose rumen
15019
15091
+
Arg
CCT
[ENA]
¡û
>WENV180002006
FLNX01004384
[FLNX] bioreactor metagenome; Moose rumen
37789
37861
+
Arg
CCT
[ENA]
¡û
>WENV180002163
FLNY01000090
[FLNY] bioreactor metagenome; Moose rumen
4325
4253
-
Arg
CCT
[ENA]
¡û
>WENV180002174
FLNY01000113
[FLNY] bioreactor metagenome; Moose rumen
39513
39441
-
Arg
CCT
[ENA]
¡û
>WENV180002851
FLNY01004056
[FLNY] bioreactor metagenome; Moose rumen
45253
45327
+
Arg
CCT
[ENA]
¡û
>WENV180005811
FLRX01001426
[FLRX] metagenome; saliva
653
581
-
Arg
CCT
[ENA]
¡û
>WENV180230834
OBCM01009123
[OBCM] human gut metagenome; human gut
572
500
-
Arg
CCT
[ENA]
¡û
>WENV180338524
OBLI01000509
[OBLI] pig gut metagenome; faeces
35779
35851
+
Arg
CCT
[ENA]
¡û
>WENV180656497
OCVV010567674
[OCVV] gut metagenome; gut
69
141
+
Arg
CCT
[ENA]
¡û
>WENV180656498
OCVV010567674
[OCVV] gut metagenome; gut
69
141
+
Arg
CCT
[ENA]
¡û
>WENV180664689
OCVV011166941
[OCVV] gut metagenome; gut
1218
1290
+
Arg
CCT
[ENA]
¡û
>WENV180664690
OCVV011166941
[OCVV] gut metagenome; gut
1218
1290
+
Arg
CCT
[ENA]
¡û
>WENV180669143
OCVV011275628
[OCVV] gut metagenome; gut
361
433
+
Arg
CCT
[ENA]
¡û
>WENV180669144
OCVV011275628
[OCVV] gut metagenome; gut
361
433
+
Arg
CCT
[ENA]
¡û
>WENV180670465
OCVV011302006
[OCVV] gut metagenome; gut
6513
6585
+
Arg
CCT
[ENA]
¡û
>WENV180670466
OCVV011302006
[OCVV] gut metagenome; gut
6513
6585
+
Arg
CCT
[ENA]
¡û
>WENV180679827
OCVV012379319
[OCVV] gut metagenome; gut
93
21
-
Arg
CCT
[ENA]
¡û
>WENV180679828
OCVV012379319
[OCVV] gut metagenome; gut
93
21
-
Arg
CCT
[ENA]
¡û
>WENV180682869
OCVV012832489
[OCVV] gut metagenome; gut
1502
1430
-
Arg
CCT
[ENA]
¡û
>WENV180682870
OCVV012832489
[OCVV] gut metagenome; gut
1502
1430
-
Arg
CCT
[ENA]
¡û
>WENV180683216
OCVV012836967
[OCVV] gut metagenome; gut
9164
9092
-
Arg
CCT
[ENA]
¡û
>WENV180683218
OCVV012836967
[OCVV] gut metagenome; gut
9164
9092
-
Arg
CCT
[ENA]
¡û
>WENV180683763
OCVV012846672
[OCVV] gut metagenome; gut
32366
32438
+
Arg
CCT
[ENA]
¡û
>WENV180683764
OCVV012846672
[OCVV] gut metagenome; gut
32366
32438
+
Arg
CCT
[ENA]
¡û
>WENV180683937
OCVV012850341
[OCVV] gut metagenome; gut
8838
8766
-
Arg
CCT
[ENA]
¡û
>WENV180683938
OCVV012850341
[OCVV] gut metagenome; gut
8838
8766
-
Arg
CCT
[ENA]
¡û
>WENV181069511
ODZZ01071137
[ODZZ] human metagenome; G_DNA_Tongue dorsum
75
147
+
Arg
CCT
[ENA]
¡û
>WENV181092231
OEBC01357843
[OEBC] human metagenome; G_DNA_Supragingival plaque
84
12
-
Arg
CCT
[ENA]
¡û
>WENV183643862
OQVP01000529
[OQVP] human gut metagenome; human gut
3525
3453
-
Arg
CCT
[ENA]
¡û
>WENV183649924
OQVT01007369
[OQVT] human gut metagenome; human gut
1540
1612
+
Arg
CCT
[ENA]
¡û
>WENV183653407
OQVZ01021394
[OQVZ] human gut metagenome; human gut
1125
1053
-
Arg
CCT
[ENA]
¡û
>WENV183656017
OQWE01003260
[OQWE] human gut metagenome; human gut
254
326
+
Arg
CCT
[ENA]
¡û
>WENV183656864
OQWI01000548
[OQWI] human gut metagenome; human gut
12001
12073
+
Arg
CCT
[ENA]
¡û
>WENV183659613
OQWM01038594
[OQWM] human gut metagenome; human gut
368
440
+
Arg
CCT
[ENA]
¡û
>WENV170775295
LXOW01028867
[LXOW] bovine gut metagenome; Cow rumen
73
1
-
Arg
CCT
[ENA]
¡û
>WENV170776046
LXOW01120178
[LXOW] bovine gut metagenome; Cow rumen
1810
1736
-
Arg
CCT
[ENA]
¡û
>WENV170776183
LXOW01139620
[LXOW] bovine gut metagenome; Cow rumen
8591
8517
-
Arg
CCT
[ENA]
¡û
>WENV170776290
LXOW01149803
[LXOW] bovine gut metagenome; Cow rumen
1324
1252
-
Arg
CCT
[ENA]
¡û
>WENV170776377
LXOW01161721
[LXOW] bovine gut metagenome; Cow rumen
14574
14502
-
Arg
CCT
[ENA]
¡û
>WENV170776529
LXOW01178759
[LXOW] bovine gut metagenome; Cow rumen
3043
3117
+
Arg
CCT
[ENA]
¡û
>WENV170776591
LXOW01184894
[LXOW] bovine gut metagenome; Cow rumen
105
31
-
Arg
CCT
[ENA]
¡û
>WENV170776883
LXOW01220032
[LXOW] bovine gut metagenome; Cow rumen
7
81
+
Arg
CCT
[ENA]
¡û
>WENV170777128
LXOW01248503
[LXOW] bovine gut metagenome; Cow rumen
1935
2007
+
Arg
CCT
[ENA]
¡û
>WENV170777271
LXOW01263271
[LXOW] bovine gut metagenome; Cow rumen
1655
1583
-
Arg
CCT
[ENA]
¡û
>WENV170777554
LXOW01298566
[LXOW] bovine gut metagenome; Cow rumen
256
182
-
Arg
CCT
[ENA]
¡û
>WENV170777675
LXOW01310360
[LXOW] bovine gut metagenome; Cow rumen
311
385
+
Arg
CCT
[ENA]
¡û
>WENV170777889
LXOW01334873
[LXOW] bovine gut metagenome; Cow rumen
1
75
+
Arg
CCT
[ENA]
¡û
>WENV170777970
LXOW01343350
[LXOW] bovine gut metagenome; Cow rumen
200
128
-
Arg
CCT
[ENA]
¡û
>WENV170778062
LXOW01355335
[LXOW] bovine gut metagenome; Cow rumen
17
89
+
Arg
CCT
[ENA]
¡û
>WENV170778255
LXOW01377524
[LXOW] bovine gut metagenome; Cow rumen
565
637
+
Arg
CCT
[ENA]
¡û
>WENV170778596
LXOW01418464
[LXOW] bovine gut metagenome; Cow rumen
73
1
-
Arg
CCT
[ENA]
¡û
>WENV170778655
LXOW01423598
[LXOW] bovine gut metagenome; Cow rumen
7234
7308
+
Arg
CCT
[ENA]
¡û
>W141560045
JHXG01000006
Bacteroidota
Xylanibacter brevis P6B11 [JHXG]
73881
73809
-
Arg
CCT
[ENA]
¡û
>W141560309
JHXM01000003
Bacteroidota
Xylanibacter brevis ATCC 19188 [JHXM]
164355
164283
-
Arg
CCT
[ENA]
¡û
>W141817423
JQKR01000012
Bacteroidota
Prevotella sp. FD3004 [JQKR]
57447
57373
-
Arg
CCT
[ENA]
¡û
>W1911154187
NPIZ01000098
Bacteroidota
Prevotella sp. P5-126 [NPIZ]
5053
4981
-
Arg
CCT
[ENA]
¡û
>W1911154191
NPJA01000003
Bacteroidota
Prevotella sp. P5-50 [NPJA]
6430
6358
-
Arg
CCT
[ENA]
¡û
>W1911154232
NPJB01000023
Bacteroidota
Prevotella sp. P4-119 [NPJB]
70792
70720
-
Arg
CCT
[ENA]
¡û
>W1911154307
NPJC01000062
Bacteroidota
Prevotella sp. P4-98 [NPJC]
6002
5930
-
Arg
CCT
[ENA]
¡û
>W1911154320
NPJD01000003
Bacteroidota
Prevotella sp. P3-120 [NPJD]
6003
5931
-
Arg
CCT
[ENA]
¡û
>W1911154381
NPJE01000050
Bacteroidota
Prevotella sp. P3-92 [NPJE]
6003
5931
-
Arg
CCT
[ENA]
¡û
>W2011024052
NPIZ01000098
Bacteroidota
Prevotella sp. P5-126 [NPIZ]
5053
4981
-
Arg
CCT
[ENA]
¡û
>W2011024056
NPJA01000003
Bacteroidota
Prevotella sp. P5-50 [NPJA]
6430
6358
-
Arg
CCT
[ENA]
¡û
>W2011024097
NPJB01000023
Bacteroidota
Prevotella sp. P4-119 [NPJB]
70792
70720
-
Arg
CCT
[ENA]
¡û
>W2011024172
NPJC01000062
Bacteroidota
Prevotella sp. P4-98 [NPJC]
6002
5930
-
Arg
CCT
[ENA]
¡û
>W2011024185
NPJD01000003
Bacteroidota
Prevotella sp. P3-120 [NPJD]
6003
5931
-
Arg
CCT
[ENA]
¡û
>W2011024246
NPJE01000050
Bacteroidota
Prevotella sp. P3-92 [NPJE]
6003
5931
-
Arg
CCT
[ENA]
¡û
>C231306016
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
3149878
3149806
-
Arg
CCT
-
¡û
>C231306066
CP091788
Bacteroidota
Prevotella sp. E2-28 [CP091788]
3297063
3297135
+
Arg
CCT
-
¡û
>C231306116
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
3343251
3343325
+
Arg
CCT
-
¡û
>C231306166
CP091791
Bacteroidota
Prevotella sp. E2-25 [CP091791]
3152078
3152150
+
Arg
CCT
-
¡û
>C231306217
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
3267940
3268014
+
Arg
CCT
-
¡û
>C231306269
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
3267908
3267982
+
Arg
CCT
-
¡û
>C231306343
CP091794
Bacteroidota
Prevotella sp. E15-14 [CP091794]
331594
331520
-
Arg
CCT
-
¡û
>C231368375
CP096247
Bacteroidota
Prevotella sp. E15-22 [CP096247]
209011
208937
-
Arg
CCT
-
¡û
>W1710516533
FNCQ01000001
Bacteroidota
Prevotella communis BP1-148 [FNCQ]
225897
225823
-
Arg
CCT
[ENA]
¡û
>W1710524637
FNIW01000023
Bacteroidota
Prevotella communis BP1-145 [FNIW]
10612
10538
-
Arg
CCT
[ENA]
¡û
>W1710538041
FNUF01000005
Bacteroidota
Prevotella sp. lc2012 [FNUF]
62613
62687
+
Arg
CCT
[ENA]
¡û
>W1710538795
FNUV01000002
Bacteroidota
Xylanibacter ruminicola [FNUV]
42692
42618
-
Arg
CCT
[ENA]
¡û
>W1710546779
FOCK01000004
Bacteroidota
Prevotella sp. ne3005 [FOCK]
24789
24715
-
Arg
CCT
[ENA]
¡û
>W1710554739
FOIQ01000002
Bacteroidota
Prevotella aff. ruminicola Tc2-24 [FOIQ]
47196
47122
-
Arg
CCT
[ENA]
¡û
>W1710554917
FOIV01000002
Bacteroidota
Prevotella sp. khp7 [FOIV]
141746
141672
-
Arg
CCT
[ENA]
¡û
>W1710572084
FOWK01000005
Bacteroidota
Prevotella sp. tf2-5 [FOWK]
94867
94941
+
Arg
CCT
[ENA]
¡û
>W1710579716
FPIT01000009
Bacteroidota
Prevotellaceae bacterium HUN156 [FPIT]
169758
169830
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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