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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.369493 (154 seq.)
>W1711067089
LSDM01000093
Bacteroidota
Prevotella sp. DNF00663 [LSDM]
25075
25001
-
Arg
CCT
[ENA]
¡û
>W131233731
AUKF01000008
Bacteroidota
Segatella baroniae C21a [AUKF]
271008
270936
-
Arg
CCT
[ENA]
¡û
>WENV180119985
OASE01046429
[OASE] human gut metagenome; ENVO:feces
331
259
-
Arg
CCT
[ENA]
¡û
>WENV180204336
OBAH01000224
[OBAH] human gut metagenome; human gut
3478
3550
+
Arg
CCT
[ENA]
¡û
>WENV180204925
OBAH01002687
[OBAH] human gut metagenome; human gut
6961
7033
+
Arg
CCT
[ENA]
¡û
>WENV180206511
OBAI01000347
[OBAI] human gut metagenome; human gut
3478
3550
+
Arg
CCT
[ENA]
¡û
>WENV180206598
OBAI01000506
[OBAI] human gut metagenome; human gut
11976
12048
+
Arg
CCT
[ENA]
¡û
>WENV180229052
OBCH01000023
[OBCH] human gut metagenome; human gut
24392
24464
+
Arg
CCT
[ENA]
¡û
>WENV180229188
OBCH01002814
[OBCH] human gut metagenome; human gut
356
284
-
Arg
CCT
[ENA]
¡û
>WENV180230148
OBCL01000256
[OBCL] human gut metagenome; human gut
2738
2666
-
Arg
CCT
[ENA]
¡û
>WENV180286561
OBII01003427
[OBII] human gut metagenome; feces
3217
3289
+
Arg
CCT
[ENA]
¡û
>WENV180324802
OBKS01000282
[OBKS] human gut metagenome; human gut
51183
51111
-
Arg
CCT
[ENA]
¡û
>WENV180329821
OBKV01007272
[OBKV] human gut metagenome; human gut
1817
1745
-
Arg
CCT
[ENA]
¡û
>WENV180341494
OBLI01139503
[OBLI] pig gut metagenome; faeces
571
499
-
Arg
CCT
[ENA]
¡û
>WENV180403419
OBRT01000153
[OBRT] human gut metagenome; ENVO:feces
20642
20714
+
Arg
CCT
[ENA]
¡û
>WENV180404468
OBSA01002271
[OBSA] human gut metagenome; ENVO:feces
1413
1485
+
Arg
CCT
[ENA]
¡û
>WENV180405226
OBTM01000041
[OBTM] human gut metagenome; ENVO:feces
19596
19524
-
Arg
CCT
[ENA]
¡û
>WENV180539348
OCHP01001522
[OCHP] human gut metagenome; human gut
205
277
+
Arg
CCT
[ENA]
¡û
>WENV180564619
OCLF01000032
[OCLF] human gut metagenome; human gut
12875
12947
+
Arg
CCT
[ENA]
¡û
>WENV180597500
OCPL01002703
[OCPL] human gut metagenome; ENVO:feces
1211
1283
+
Arg
CCT
[ENA]
¡û
>WENV180625169
OCQK01000003
[OCQK] human gut metagenome; human gut
46534
46606
+
Arg
CCT
[ENA]
¡û
>WENV180627926
OCQO01002588
[OCQO] human gut metagenome; human gut
52
124
+
Arg
CCT
[ENA]
¡û
>WENV180654031
OCVV010266135
[OCVV] gut metagenome; gut
160
232
+
Arg
CCT
[ENA]
¡û
>WENV180654032
OCVV010266135
[OCVV] gut metagenome; gut
160
232
+
Arg
CCT
[ENA]
¡û
>WENV180739955
ODHE01000958
[ODHE] human metagenome; G_DNA_Stool
7179
7251
+
Arg
CCT
[ENA]
¡û
>WENV180849456
ODKV01000454
[ODKV] human metagenome; G_DNA_Stool
26577
26649
+
Arg
CCT
[ENA]
¡û
>WENV180850345
ODKV01004981
[ODKV] human metagenome; G_DNA_Stool
8084
8012
-
Arg
CCT
[ENA]
¡û
>WENV180915249
ODTB01000325
[ODTB] human metagenome; G_DNA_Stool
34566
34494
-
Arg
CCT
[ENA]
¡û
>WENV180915379
ODTB01000769
[ODTB] human metagenome; G_DNA_Stool
18126
18198
+
Arg
CCT
[ENA]
¡û
>WENV181015104
ODWP01007115
[ODWP] human metagenome; G_DNA_Stool
102
30
-
Arg
CCT
[ENA]
¡û
>WENV181054009
ODYI01001368
[ODYI] human metagenome; G_DNA_Stool
2
74
+
Arg
CCT
[ENA]
¡û
>WENV181098872
OECI01000445
[OECI] human metagenome; G_DNA_Stool
26640
26712
+
Arg
CCT
[ENA]
¡û
>WENV181098906
OECI01000497
[OECI] human metagenome; G_DNA_Stool
34566
34494
-
Arg
CCT
[ENA]
¡û
>WENV181396717
OFSC01012612
[OFSC] human gut metagenome; human gut
1219
1291
+
Arg
CCT
[ENA]
¡û
>WENV181434599
OGDF01001076
[OGDF] human gut metagenome; human gut
29002
28930
-
Arg
CCT
[ENA]
¡û
>WENV181477355
OGFF01001438
[OGFF] metagenome; Human gut stool
17455
17527
+
Arg
CCT
[ENA]
¡û
>WENV181544559
OGIG01000558
[OGIG] metagenome; Human gut stool
6979
7051
+
Arg
CCT
[ENA]
¡û
>WENV181577437
OGJX01001272
[OGJX] metagenome; Human gut stool
11673
11601
-
Arg
CCT
[ENA]
¡û
>WENV181588933
OGKK01000017
[OGKK] metagenome; Human gut stool
29003
29075
+
Arg
CCT
[ENA]
¡û
>WENV181589371
OGKL01000080
[OGKL] metagenome; Human gut stool
5781
5853
+
Arg
CCT
[ENA]
¡û
>WENV181631057
OGMR01000652
[OGMR] metagenome; Human gut stool
7433
7505
+
Arg
CCT
[ENA]
¡û
>WENV181674674
OGOP01000213
[OGOP] human gut metagenome; faeces
40953
40881
-
Arg
CCT
[ENA]
¡û
>WENV181712518
OGPQ01000166
[OGPQ] human gut metagenome; faeces
31048
31120
+
Arg
CCT
[ENA]
¡û
>WENV181796692
OGRU01000102
[OGRU] human gut metagenome; faeces
7317
7389
+
Arg
CCT
[ENA]
¡û
>WENV181906794
OGXZ01005737
[OGXZ] human gut metagenome; faeces
2249
2177
-
Arg
CCT
[ENA]
¡û
>WENV181936989
OGYV01009922
[OGYV] human gut metagenome; faeces
3007
3079
+
Arg
CCT
[ENA]
¡û
>WENV181950817
OGZG01012652
[OGZG] human gut metagenome; faeces
2557
2485
-
Arg
CCT
[ENA]
¡û
>WENV182001699
OHAY01011668
[OHAY] human gut metagenome; faeces
130
58
-
Arg
CCT
[ENA]
¡û
>WENV182011907
OHBM01004478
[OHBM] human gut metagenome; faeces
737
665
-
Arg
CCT
[ENA]
¡û
>WENV182281151
OHVB01000066
[OHVB] human gut metagenome; feces
43368
43440
+
Arg
CCT
[ENA]
¡û
>WENV182292555
OHWB01000298
[OHWB] human gut metagenome; feces
1208
1136
-
Arg
CCT
[ENA]
¡û
>WENV182311519
OHXS01012982
[OHXS] human gut metagenome; feces
686
758
+
Arg
CCT
[ENA]
¡û
>WENV182331028
OHZH01002002
[OHZH] human gut metagenome; feces
117
45
-
Arg
CCT
[ENA]
¡û
>WENV182334004
OHZM01000026
[OHZM] human gut metagenome; feces
28933
28861
-
Arg
CCT
[ENA]
¡û
>WENV182335888
OHZS01000426
[OHZS] human gut metagenome; feces
15468
15540
+
Arg
CCT
[ENA]
¡û
>WENV182337153
OHZV01002527
[OHZV] human gut metagenome; feces
252
180
-
Arg
CCT
[ENA]
¡û
>WENV182339516
OIAC01006681
[OIAC] human gut metagenome; feces
736
808
+
Arg
CCT
[ENA]
¡û
>WENV182350186
OIBF01000045
[OIBF] human gut metagenome; feces
23956
24028
+
Arg
CCT
[ENA]
¡û
>WENV182363519
OICF01025928
[OICF] human gut metagenome; feces
432
504
+
Arg
CCT
[ENA]
¡û
>WENV182511299
OIWK01042051
[OIWK] human gut metagenome; faeces
75
3
-
Arg
CCT
[ENA]
¡û
>WENV182521640
OIWQ01023163
[OIWQ] human gut metagenome; faeces
1516
1588
+
Arg
CCT
[ENA]
¡û
>WENV182522423
OIWS01000424
[OIWS] human gut metagenome; faeces
49054
49126
+
Arg
CCT
[ENA]
¡û
>WENV182524645
OIWT01000413
[OIWT] human gut metagenome; faeces
34537
34609
+
Arg
CCT
[ENA]
¡û
>WENV182528029
OIWU01001371
[OIWU] human gut metagenome; faeces
7975
7903
-
Arg
CCT
[ENA]
¡û
>WENV182530545
OIWV01003856
[OIWV] human gut metagenome; faeces
1516
1588
+
Arg
CCT
[ENA]
¡û
>WENV182532792
OIXA01004412
[OIXA] human gut metagenome; faeces
2128
2056
-
Arg
CCT
[ENA]
¡û
>WENV182534289
OIXG01000422
[OIXG] human gut metagenome; faeces
27063
27135
+
Arg
CCT
[ENA]
¡û
>WENV182607079
OJJU01001741
[OJJU] metagenome; faeces
3800
3872
+
Arg
CCT
[ENA]
¡û
>WENV182607385
OJJU01008166
[OJJU] metagenome; faeces
300
372
+
Arg
CCT
[ENA]
¡û
>WENV182625367
OJKP01000192
[OJKP] metagenome; faeces
11519
11591
+
Arg
CCT
[ENA]
¡û
>WENV182625803
OJKP01001467
[OJKP] metagenome; faeces
3192
3120
-
Arg
CCT
[ENA]
¡û
>WENV182656115
OJMJ01000622
[OJMJ] human gut metagenome; feces
11817
11745
-
Arg
CCT
[ENA]
¡û
>WENV182658713
OJML01000447
[OJML] human gut metagenome; feces
5197
5269
+
Arg
CCT
[ENA]
¡û
>WENV182659101
OJML01003683
[OJML] human gut metagenome; feces
2765
2693
-
Arg
CCT
[ENA]
¡û
>WENV182660264
OJMM01000494
[OJMM] human gut metagenome; feces
18149
18221
+
Arg
CCT
[ENA]
¡û
>WENV182662860
OJMO01000577
[OJMO] human gut metagenome; feces
7957
7885
-
Arg
CCT
[ENA]
¡û
>WENV182868231
OKRS01002793
[OKRS] human gut metagenome; faeces
2635
2563
-
Arg
CCT
[ENA]
¡û
>WENV182875334
OKRX01000779
[OKRX] human gut metagenome; faeces
13284
13212
-
Arg
CCT
[ENA]
¡û
>WENV182924652
OKUI01000065
[OKUI] human gut metagenome; feces
331
259
-
Arg
CCT
[ENA]
¡û
>WENV182928365
OKUO01000202
[OKUO] human gut metagenome; feces
2039
1967
-
Arg
CCT
[ENA]
¡û
>WENV182932068
OKUU01000013
[OKUU] human gut metagenome; feces
89228
89300
+
Arg
CCT
[ENA]
¡û
>WENV183028068
OLFV01000948
[OLFV] human gut metagenome; faeces
26000
25928
-
Arg
CCT
[ENA]
¡û
>WENV183036130
OLGA01000207
[OLGA] human gut metagenome; faeces
48988
49060
+
Arg
CCT
[ENA]
¡û
>WENV183044078
OLGE01000315
[OLGE] human gut metagenome; faeces
26165
26093
-
Arg
CCT
[ENA]
¡û
>WENV183050657
OLGI01001630
[OLGI] human gut metagenome; faeces
10045
10117
+
Arg
CCT
[ENA]
¡û
>WENV183051447
OLGJ01000158
[OLGJ] human gut metagenome; faeces
26017
25945
-
Arg
CCT
[ENA]
¡û
>WENV183071033
OLIS01001953
[OLIS] human gut metagenome; feces
5197
5269
+
Arg
CCT
[ENA]
¡û
>WENV183093536
OLMZ01000035
[OLMZ] human gut metagenome; human gut
1140
1068
-
Arg
CCT
[ENA]
¡û
>WENV183146939
OLOM01039915
[OLOM] human gut metagenome; faeces
386
314
-
Arg
CCT
[ENA]
¡û
>WENV183226209
OLQO01001130
[OLQO] human gut metagenome; faeces
85
13
-
Arg
CCT
[ENA]
¡û
>WENV183304143
OLSQ01018805
[OLSQ] human gut metagenome; faeces
331
259
-
Arg
CCT
[ENA]
¡û
>WENV183304984
OLSX01000072
[OLSX] human gut metagenome; faeces
10304
10376
+
Arg
CCT
[ENA]
¡û
>WENV183315907
OLVS01001285
[OLVS] human gut metagenome; feces
3236
3164
-
Arg
CCT
[ENA]
¡û
>WENV183342224
OLWN01003708
[OLWN] human gut metagenome; feces
480
552
+
Arg
CCT
[ENA]
¡û
>WENV183353874
OLXB01002694
[OLXB] human gut metagenome; feces
3184
3112
-
Arg
CCT
[ENA]
¡û
>WENV183370385
OLXU01000079
[OLXU] human gut metagenome; feces
9645
9573
-
Arg
CCT
[ENA]
¡û
>WENV183373783
OLXY01003490
[OLXY] human gut metagenome; feces
2675
2603
-
Arg
CCT
[ENA]
¡û
>WENV183378951
OLYC01004569
[OLYC] human gut metagenome; feces
3365
3437
+
Arg
CCT
[ENA]
¡û
>WENV183379917
OLYF01000012
[OLYF] human gut metagenome; feces
9792
9720
-
Arg
CCT
[ENA]
¡û
>WENV183394965
OLZH01000140
[OLZH] human gut metagenome; feces
4575
4647
+
Arg
CCT
[ENA]
¡û
>WENV183397013
OLZJ01000977
[OLZJ] human gut metagenome; feces
9645
9573
-
Arg
CCT
[ENA]
¡û
>WENV183408105
OMAD01000061
[OMAD] human gut metagenome; feces
4523
4595
+
Arg
CCT
[ENA]
¡û
>WENV183410161
OMAH01000422
[OMAH] human gut metagenome; feces
2286
2358
+
Arg
CCT
[ENA]
¡û
>WENV183412256
OMAM01000074
[OMAM] human gut metagenome; feces
53753
53681
-
Arg
CCT
[ENA]
¡û
>WENV183413746
OMAO01000067
[OMAO] human gut metagenome; feces
20940
21012
+
Arg
CCT
[ENA]
¡û
>WENV183415673
OMAR01000049
[OMAR] human gut metagenome; feces
12128
12200
+
Arg
CCT
[ENA]
¡û
>WENV183421105
OMBB01000833
[OMBB] human gut metagenome; feces
9645
9573
-
Arg
CCT
[ENA]
¡û
>WENV183421856
OMBD01000220
[OMBD] human gut metagenome; feces
12128
12200
+
Arg
CCT
[ENA]
¡û
>WENV183448181
OMCT01000203
[OMCT] human gut metagenome; feces
30091
30019
-
Arg
CCT
[ENA]
¡û
>WENV183450437
OMDA01000115
[OMDA] human gut metagenome; feces
12021
12093
+
Arg
CCT
[ENA]
¡û
>WENV183451249
OMDB01000735
[OMDB] human gut metagenome; feces
3412
3484
+
Arg
CCT
[ENA]
¡û
>WENV183471479
OMEP01000009
[OMEP] human gut metagenome; feces
19712
19784
+
Arg
CCT
[ENA]
¡û
>WENV183482263
OMFM01000120
[OMFM] human gut metagenome; feces
12127
12199
+
Arg
CCT
[ENA]
¡û
>WENV183490015
OMGB01000047
[OMGB] human gut metagenome; feces
4523
4595
+
Arg
CCT
[ENA]
¡û
>WENV183503962
OMGV01000013
[OMGV] human gut metagenome; human gut
57285
57357
+
Arg
CCT
[ENA]
¡û
>WENV183550233
OOBB01000733
[OOBB] human gut metagenome; human gut
6403
6475
+
Arg
CCT
[ENA]
¡û
>WENV183572747
OOCG01000164
[OOCG] human gut metagenome; human gut
32368
32296
-
Arg
CCT
[ENA]
¡û
>WENV183575234
OOCI01000752
[OOCI] human gut metagenome; human gut
16908
16980
+
Arg
CCT
[ENA]
¡û
>WENV183642363
OQVN01001770
[OQVN] human gut metagenome; human gut
6564
6636
+
Arg
CCT
[ENA]
¡û
>WENV183651733
OQVU01003259
[OQVU] human gut metagenome; human gut
3402
3474
+
Arg
CCT
[ENA]
¡û
>WENV183656284
OQWE01014375
[OQWE] human gut metagenome; human gut
1496
1568
+
Arg
CCT
[ENA]
¡û
>WENV183766864
PPYE01358189
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
8516
8444
-
Arg
CCT
[ENA]
¡û
>WENV183769249
PPYE01413310
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
7828
7756
-
Arg
CCT
[ENA]
¡û
>WENV170047651
CDYZ01046108
[CDYZ] gut metagenome; human stools
85
13
-
Arg
CCT
[ENA]
¡û
>WENV170048087
CDYZ01070026
[CDYZ] gut metagenome; human stools
3205
3133
-
Arg
CCT
[ENA]
¡û
>WENV170048348
CDZA01008233
[CDZA] gut metagenome; human stools
26200
26128
-
Arg
CCT
[ENA]
¡û
>WENV170049459
CDZA01064106
[CDZA] gut metagenome; human stools
10885
10957
+
Arg
CCT
[ENA]
¡û
>WENV170049949
CDZB01007796
[CDZB] gut metagenome; human stools
3509
3437
-
Arg
CCT
[ENA]
¡û
>WENV170049996
CDZB01009892
[CDZB] gut metagenome; human stools
4058
4130
+
Arg
CCT
[ENA]
¡û
>WENV170050653
CDZB01035902
[CDZB] gut metagenome; human stools
85
13
-
Arg
CCT
[ENA]
¡û
>WENV170051781
CDZB01081963
[CDZB] gut metagenome; human stools
26500
26428
-
Arg
CCT
[ENA]
¡û
>WENV170095905
CEAJ01023903
[CEAJ] gut metagenome; human stools
19507
19579
+
Arg
CCT
[ENA]
¡û
>WENV170096639
CEAK01026140
[CEAK] gut metagenome; human stools
5467
5395
-
Arg
CCT
[ENA]
¡û
>WENV170096861
CEAL01000005
[CEAL] gut metagenome; human stools
19204
19276
+
Arg
CCT
[ENA]
¡û
>W1911154428
NPJF01000026
Bacteroidota
Prevotella bryantii TC1-1 [NPJF]
250164
250092
-
Arg
CCT
[ENA]
¡û
>W1810866575
QTXV01000003
Bacteroidota
Prevotella sp. AM42-24 [QTXV]
37358
37430
+
Arg
CCT
[ENA]
¡û
>W2010261364
CABJFU020000003
Bacteroidota
Prevotellaceae bacterium [CABJFU]
37358
37430
+
Arg
CCT
[ENA]
¡û
>W2010343799
CADBHP010000021
Bacteroidota
Prevotella bryantii [CADBHP]
5159
5231
+
Arg
CCT
[ENA]
¡û
>W2011024293
NPJF01000026
Bacteroidota
Prevotella bryantii TC1-1 [NPJF]
250164
250092
-
Arg
CCT
[ENA]
¡û
>W2012213301
VZAD01000034
Bacteroidota
Prevotella copri iAQ1173 [VZAD]
67170
67098
-
Arg
CCT
[ENA]
¡û
>W2110072958
BPTR01000001
Bacteroidota
Prevotella bryantii DSM 11371 [BPTR]
1868799
1868871
+
Arg
CCT
[ENA]
¡û
>W2110640886
JAHRGG010000002
Bacteroidota
Prevotella hominis HDD12 [JAHRGG]
101244
101172
-
Arg
CCT
[ENA]
¡û
>C231306376
CP091796
Bacteroidota
Prevotella bryantii 92/1 [CP091795, CP091796]
953323
953395
+
Arg
CCT
-
¡û
>C231306497
CP091798
Bacteroidota
Prevotella bryantii TS1-5 [CP091797, CP091798]
100915
100843
-
Arg
CCT
-
¡û
>C231306528
CP091799
Bacteroidota
Prevotella bryantii B14 [CP091799, CP091800]
2199083
2199011
-
Arg
CCT
-
¡û
>C231306631
CP091801
Bacteroidota
Prevotella bryantii TC1-1 [CP091801, CP091802]
101054
100982
-
Arg
CCT
-
¡û
>W10119757
ADWO01000008
Bacteroidota
Segatella baroniae B14 [ADWO]
179
251
+
Arg
CCT
[ENA]
¡û
>C241338487
CP137559
Bacteroidota
Segatella hominis HDD12 [CP137559]
2745647
2745719
+
Arg
CCT
-
¡û
>W1511353944
JRPT01000023
Bacteroidota
Prevotella sp. S7 MS 2 [JRPT]
58328
58402
+
Arg
CCT
[ENA]
¡û
>W11126312
ADWO01000008
Bacteroidota
Segatella baroniae B14 [ADWO]
179
251
+
Arg
CCT
[ENA]
¡û
>W1610907659
LSDM01000093
Bacteroidota
Prevotella sp. DNF00663 [LSDM]
25075
25001
-
Arg
CCT
[ENA]
¡û
>W1710522313
FNHC01000001
Bacteroidota
Segatella bryantii [FNHC]
308126
308054
-
Arg
CCT
[ENA]
¡û
>W1710532831
FNQQ01000006
Bacteroidota
Segatella bryantii [FNQQ]
272546
272474
-
Arg
CCT
[ENA]
¡û
>W1710549393
FOEM01000003
Bacteroidota
Segatella baroniae B14 [FOEM]
267993
268065
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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