This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.369980 (45 seq.)
>W1710891800
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
194198
194272
+
Met
CAT
[ENA]
¡û
>W1710891806
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
91969
91895
-
Met
CAT
[ENA]
¡û
>W1710927092
LOEZ01000040
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
57239
57313
+
Met
CAT
[ENA]
¡û
>W131171191
ARGA01000060
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
171511
171585
+
Met
CAT
[ENA]
¡û
>W1711342455
MCHF01000034
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
21972
21898
-
Met
CAT
[ENA]
¡û
>W131162528
AQYY01000005
Bacillota
Dehalobacter sp. FTH1 [AQYY]
173611
173685
+
Met
CAT
[ENA]
¡û
>WENV180015429
FQKF010661315
[FQKF] soil metagenome; Soil
72
1
-
Ile2
CAT
[ENA]
¡û
>W141088304
AUUR01000130
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
6968
6894
-
Met
CAT
[ENA]
¡û
>W141246557
CANE01000011
Bacillota
Dehalobacter restrictus E1 [CANE]
64272
64198
-
Met
CAT
[ENA]
¡û
>W141246683
CANF01002343
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
64272
64198
-
Met
CAT
[ENA]
¡û
>WENV182883877
OKSB01054624
[OKSB] human gut metagenome; faeces
360
434
+
Ile2
CAT
[ENA]
¡û
>WENV183253358
OLRI01060541
[OLRI] human gut metagenome; faeces
212
286
+
Ile2
CAT
[ENA]
¡û
>WENV183331342
OLWB01111117
[OLWB] human gut metagenome; faeces
202
276
+
Ile2
CAT
[ENA]
¡û
>WENV183671649
ORJL011085100
[ORJL] groundwater metagenome; groundwater
4008
3934
-
Ile2
CAT
[ENA]
¡û
>WENV170561484
CZCA01011166
[CZCA] anaerobic digester metagenome; anaerobic digester
406
332
-
Met
CAT
[ENA]
¡û
>WENV170659037
JXWO01000121
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
20587
20661
+
Met
CAT
[ENA]
¡û
>C191002379
AP018449
Bacillota
Methylomusa anaerophila MMFC1 [AP018449]
3839525
3839599
+
Met
CAT
-
¡û
>C141011735
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
634014
634088
+
Met
CAT
[Ensembl]
¡û
>W1910639114
LSLL01000054
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
97542
97468
-
Met
CAT
[ENA]
¡û
>W1910647173
LXPC01000013
Bacillota
Dehalobacter sp. MCB1 [LXPC]
90696
90770
+
Met
CAT
[ENA]
¡û
>W1911608677
PNXX01000001
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
607416
607342
-
Met
CAT
[ENA]
¡û
>W1911613551
POSF01000011
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
263160
263086
-
Met
CAT
[ENA]
¡û
>W2010785471
LSLL01000054
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
97542
97468
-
Ile2
CAT
[ENA]
¡û
>W2010792533
LXPC01000013
Bacillota
Dehalobacter sp. MCB1 [LXPC]
90696
90770
+
Ile2
CAT
[ENA]
¡û
>W2011206899
PNXX01000001
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
607416
607342
-
Ile2
CAT
[ENA]
¡û
>W2011207088
POSF01000011
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
263160
263086
-
Ile2
CAT
[ENA]
¡û
>W2011623671
SLXT01000020
Bacillota
Heliophilum fasciatum DSM 11170 [SLXT]
39316
39390
+
Ile2
CAT
[ENA]
¡û
>W2012398835
WNKU01000001
Bacillota
Heliobacillus mobilis DSM 6151 [WNKU]
151692
151766
+
Ile2
CAT
[ENA]
¡û
>W2110018252
BMBX01000001
Bacillota
Sporomusa sp. GT1 [BMBX]
14566
14492
-
Ile2
CAT
[ENA]
¡û
>W2110269638
JACVHF010000001
Bacillota
Heliobacterium chlorum DSM 3682 [JACVHF]
340988
341062
+
Ile2
CAT
[ENA]
¡û
>W2110602211
JAHGVE010000009
Bacillota
Pelorhabdus rhamnosifermentans BoRhaA [JAHGVE]
132598
132672
+
Ile2
CAT
[ENA]
¡û
>C211065344
CP045798
Bacillota
Thermoanaerosceptrum fracticalcis DRI-13 [CP045798]
1355867
1355793
-
Ile2
CAT
-
¡û
>C241103187
CP045875
Bacillota
Heliorestis convoluta HH [CP045875]
1611872
1611946
+
Ile2
CAT
-
¡û
>C241114528
CP046996
Bacillota
Dehalobacter restrictus 12DCA [CP046996]
683493
683567
+
Ile2
CAT
-
¡û
>C11120641
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2443047
2442973
-
Met
CAT
[Ensembl]
¡û
>W11161332
AFGF01000121
Bacillota
Acetonema longum DSM 6540 [AFGF]
52081
52155
+
Met
CAT
[ENA]
¡û
>W121101666
AKVM01000074
Bacillota
Pelosinus fermentans A11 [AKVM]
21224
21150
-
Met
CAT
[ENA]
¡û
>C131008528
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2568258
2568184
-
Met
CAT
[Ensembl]
¡û
>C131008579
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2595875
2595801
-
Met
CAT
[Ensembl]
¡û
>W1610605746
LFSF01000049
Bacillota
Clostridiales bacterium DTU073 [LFSF]
4134
4060
-
Met
CAT
[ENA]
¡û
>W1610752165
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
194198
194272
+
Met
CAT
[ENA]
¡û
>W1610752171
LNDB01000001
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
91969
91895
-
Met
CAT
[ENA]
¡û
>W1610784634
LOEZ01000040
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
57239
57313
+
Met
CAT
[ENA]
¡û
>W1710515411
FNBU01000005
Bacillota
Sporolituus thermophilus DSM 23256 [FNBU]
58915
58989
+
Met
CAT
[ENA]
¡û
>W1710727033
LFSF01000049
Bacillota
Clostridiales bacterium DTU073 [LFSF]
4134
4060
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK