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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370023 (75 seq.)
>W131162087
AQYH01000004
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
272433
272359
-
Gly
CCC
[ENA]
¡û
>W1711262655
LYXZ01000020
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
173804
173730
-
Gly
CCC
[ENA]
¡û
>W1711386716
MEFR01000083
Alphaproteobacteria
Acetobacteraceae bacterium SCN 69-10 [MEFR]
5109
5035
-
Gly
CCC
[ENA]
¡û
>W1711505910
MKVY01000029
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
103381
103307
-
Gly
CCC
[ENA]
¡û
>W1711511625
MLCO01000232
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
8808
8734
-
Gly
CCC
[ENA]
¡û
>W1712104549
NIPU01000014
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
261183
261109
-
Gly
CCC
[ENA]
¡û
>W1712104584
NIPV01000011
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
74452
74526
+
Gly
CCC
[ENA]
¡û
>W1712104645
NIPW01000028
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
1315
1241
-
Gly
CCC
[ENA]
¡û
>W1712104660
NIPX01000002
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
201035
201109
+
Gly
CCC
[ENA]
¡û
>W1712104716
NIPY01000021
Alphaproteobacteria
Haematobacter massiliensis [NIPY]
19954
19880
-
Gly
CCC
[ENA]
¡û
>WENV180058232
MPLX02043065
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
7745
7819
+
Gly
CCC
[ENA]
¡û
>WENV180065386
MPLY02059986
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
8542
8468
-
Gly
CCC
[ENA]
¡û
>WENV180070839
MPLZ02193549
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
2275
2201
-
Gly
CCC
[ENA]
¡û
>WENV180072631
MPMA02031313
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
5797
5723
-
Gly
CCC
[ENA]
¡û
>WENV180078501
MPMB02108981
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
1190
1264
+
Gly
CCC
[ENA]
¡û
>WENV180091620
MPMF02208012
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
10935
10861
-
Gly
CCC
[ENA]
¡û
>WENV180097197
MTBK01173977
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
289
363
+
Gly
CCC
[ENA]
¡û
>WENV180295799
OBIZ01334540
[OBIZ] soil metagenome; soil
88
14
-
Gly
CCC
[ENA]
¡û
>WENV180351594
OBLQ010076565
[OBLQ] soil metagenome; soil
971
1045
+
Gly
CCC
[ENA]
¡û
>WENV181307989
OFIS01000084
[OFIS] sludge metagenome; sludge
76135
76061
-
Gly
CCC
[ENA]
¡û
>WENV181311448
OFJB01002244
[OFJB] sludge metagenome; sludge
4228
4154
-
Gly
CCC
[ENA]
¡û
>WENV181401334
OFTX01000007
[OFTX] sludge metagenome; sludge
90256
90182
-
Gly
CCC
[ENA]
¡û
>WENV181416243
OGCL01064652
[OGCL] hot springs metagenome; Hot spring water
885
959
+
Gly
CCC
[ENA]
¡û
>WENV183724234
PJQE01002829
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
1603
1529
-
Gly
CCC
[ENA]
¡û
>WENV183796682
PVBE010271303
[PVBE] marine metagenome; water
2021
2095
+
Gly
CCC
[ENA]
¡û
>WENV170383284
CETX01093812
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
464
390
-
Gly
CCC
[ENA]
¡û
>WENV170394020
CEUC01003654
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1223
1297
+
Gly
CCC
[ENA]
¡û
>WENV170398875
CEUD01319654
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
139
65
-
Gly
CCC
[ENA]
¡û
>W141461698
JFGS01000001
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
200951
201025
+
Gly
CCC
[ENA]
¡û
>WENV170881958
MDTC01140783
[MDTC] marine metagenome; seawater
3240
3166
-
Gly
CCC
[ENA]
¡û
>C181020322
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
1700981
1700907
-
Gly
CCC
-
¡û
>C181179120
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
3572803
3572729
-
Gly
CCC
-
¡û
>W141523457
JGYG01000001
Alphaproteobacteria
Haematobacter massiliensis [JGYG]
443012
442938
-
Gly
CCC
[ENA]
¡û
>C191144267
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
1552453
1552379
-
Gly
CCC
-
¡û
>W1911653588
QDGA01000037
Alphaproteobacteria
Microvirga sp. CCBAU 65841 [QDGA]
664
590
-
Gly
CCC
[ENA]
¡û
>W1911768588
QXGS01000004
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
140568
140494
-
Gly
CCC
[ENA]
¡û
>W1810005669
BFBR01000001
Alphaproteobacteria
Candidatus Phycosocius bacilliformis bacilliformis BOTRYCO-2 [BFBR]
57384
57310
-
Gly
CCC
[ENA]
¡û
>SRA1001995
SRR001308.170261
Metagenomic characterization of a wastewater treatment plant (SRP000180)
11
85
+
Gly
CCC
[SRA]
>SRA1002219
SRR001308.309557
Metagenomic characterization of a wastewater treatment plant (SRP000180)
11
85
+
Gly
CCC
[SRA]
>W1810273186
PSNV01000026
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
10848
10774
-
Gly
CCC
[ENA]
¡û
>W1810706684
QMKH01000005
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
189377
189303
-
Gly
CCC
[ENA]
¡û
>W1810735503
QOIO01000020
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
98581
98655
+
Gly
CCC
[ENA]
¡û
>W1810763431
QQBB01000007
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
314100
314174
+
Gly
CCC
[ENA]
¡û
>W2010104605
BJYU01000018
Alphaproteobacteria
Microvirga aerophila NBRC 106136 [BJYU]
10374
10300
-
Gly
CCC
[ENA]
¡û
>W2010320819
CACSJM010000043
Alphaproteobacteria
Roseomonas sp. 18066 [CACSJM]
29322
29396
+
Gly
CCC
[ENA]
¡û
>W2010568018
JAATJS010000005
Alphaproteobacteria
Microvirga sp. c23x22 [JAATJS]
935
861
-
Gly
CCC
[ENA]
¡û
>W2010609942
JABMLM010000390
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
298615
298689
+
Gly
CCC
[ENA]
¡û
>W2010724937
JACIDS010000006
Alphaproteobacteria
Kaistia hirudinis DSM 25966 [JACIDS]
158680
158606
-
Gly
CCC
[ENA]
¡û
>W2011237147
QDGA01000037
Alphaproteobacteria
Microvirga sp. CCBAU 65841 [QDGA]
664
590
-
Gly
CCC
[ENA]
¡û
>W2011326145
QXGS01000004
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
140568
140494
-
Gly
CCC
[ENA]
¡û
>W2011355690
RAQU01000010
Alphaproteobacteria
Roseomonas sp. Z24 [RAQU]
43641
43715
+
Gly
CCC
[ENA]
¡û
>W2011416816
RFLX01000006
Alphaproteobacteria
Roseomonas sp. Z23 [RFLX]
43641
43715
+
Gly
CCC
[ENA]
¡û
>W2011966357
VBTZ01000001
Alphaproteobacteria
Methylocystis sp. B8 [VBTZ]
886484
886558
+
Gly
CCC
[ENA]
¡û
>W2011976645
VCMV01000003
Alphaproteobacteria
Microvirga sp. CDVBN77 [VCMV]
299037
299111
+
Gly
CCC
[ENA]
¡û
>W2012152276
VUKA01000004
Alphaproteobacteria
Roseomonas oryzae KCTC 42542 [VUKA]
145020
144946
-
Gly
CCC
[ENA]
¡û
>W2110264434
JACTNF010000018
Alphaproteobacteria
Roseomonas sp. 1311 [JACTNF]
55576
55502
-
Gly
CCC
[ENA]
¡û
>W2110264450
JACTNG010000002
Alphaproteobacteria
Roseomonas sp. 573 [JACTNG]
198646
198720
+
Gly
CCC
[ENA]
¡û
>W2110265914
JACTUZ010000005
Alphaproteobacteria
Roseomonas ludipueritiae DSM 14915 [JACTUZ]
55945
56019
+
Gly
CCC
[ENA]
¡û
>W2110265955
JACTVA010000002
Alphaproteobacteria
Roseomonas aerophila NBRC 108923 [JACTVA]
88528
88602
+
Gly
CCC
[ENA]
¡û
>W2110372488
JADQDO010000008
Alphaproteobacteria
Microvirga sp. BT350 [JADQDO]
212446
212520
+
Gly
CCC
[ENA]
¡û
>W2110444883
JAERQD010000023
Alphaproteobacteria
Microvirga zambiensis WSM3693 [JAERQD]
102960
103034
+
Gly
CCC
[ENA]
¡û
>W2110484119
JAFEMB010000001
Alphaproteobacteria
Microvirga sp. BT291 [JAFEMB]
642426
642352
-
Gly
CCC
[ENA]
¡û
>W2110517955
JAFNIH010000041
Alphaproteobacteria
Pinisolibacter sp. B13 [JAFNIH]
235055
235129
+
Gly
CCC
[ENA]
¡û
>C201133553
CP043489
Alphaproteobacteria
Labrys neptuniae KNU-23 [CP043488, CP043489]
3776690
3776616
-
Gly
CCC
-
¡û
>W2110695605
JAIRBM010000009
Alphaproteobacteria
Microvirga sp. WGZ8 [JAIRBM]
839
765
-
Gly
CCC
[ENA]
¡û
>C211017778
AP024269
Alphaproteobacteria
Kaistia sp. 32K [AP024269]
322736
322662
-
Gly
CCC
-
¡û
>C211259068
CP069354
Alphaproteobacteria
Microvirga sp. VF16 [CP069354]
4664212
4664138
-
Gly
CCC
-
¡û
>W2110736651
JAJDOP010000007
Alphaproteobacteria
Microvirga rosea CGMCC1.16488 [JAJDOP]
922
848
-
Gly
CCC
[ENA]
¡û
>C231307443
CP091851
Alphaproteobacteria
Hyphomicrobiales bacterium 7MK25 [CP091851]
4477451
4477377
-
Gly
CCC
-
¡û
>W2110762760
RCVQ01000003
Alphaproteobacteria
Roseomonas sp. KE0001 [RCVQ]
101847
101921
+
Gly
CCC
[ENA]
¡û
>C231620200
CP119318
Alphaproteobacteria
Kaistia sp. [CP119318]
1515048
1514974
-
Gly
CCC
-
¡û
>W2310026099
BSPC01000011
Alphaproteobacteria
Labrys miyagiensis NBRC 101365 [BSPC]
223639
223565
-
Gly
CCC
[ENA]
¡û
>W1511624267
LCYG01000029
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
11529
11455
-
Gly
CCC
[ENA]
¡û
>W121009573
AGEZ01000056
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
36048
35974
-
Gly
CCC
[ENA]
¡û
>W1611024522
LYXZ01000020
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
173804
173730
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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