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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370076 (37 seq.)
>W131094518
AOOA01000015
Gammaproteobacteria
Dickeya chrysanthemi NCPPB 402 [AOOA]
36241
36167
-
Arg
CCT
[ENA]
¡û
>W131094643
AOOC01000008
Gammaproteobacteria
Dickeya chrysanthemi NCPPB 516 [AOOC]
375306
375232
-
Arg
CCT
[ENA]
¡û
>W131095099
AOOJ01000018
Gammaproteobacteria
Dickeya chrysanthemi NCPPB 3533 [AOOJ]
195383
195309
-
Arg
CCT
[ENA]
¡û
>W131238059
AUUA01000013
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
48553
48479
-
Arg
CCT
[ENA]
¡û
>W141055469
AONV01000027
Gammaproteobacteria
Musicola paradisiaca NCPPB 2511 [AONV]
166975
167049
+
Arg
CCT
[ENA]
¡û
>W141136621
AWGA01000011
Gammaproteobacteria
Candidatus Schmidhempelia bombi bombi str. Bimp [AWGA]
90132
90206
+
Arg
CCT
[ENA]
¡û
>WENV181905063
OGXX01078760
[OGXX] human gut metagenome; faeces
199
125
-
Arg
CCT
[ENA]
¡û
>C181123155
CP025799
Gammaproteobacteria
Dickeya zeae MS2 [CP025799]
3156235
3156309
+
Arg
CCT
-
¡û
>C181215581
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1162656
1162582
-
Arg
CCT
-
¡û
>W141710657
JMPN01000008
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [JMPN]
48490
48416
-
Arg
CCT
[ENA]
¡û
>W141779046
JONM01000003
Betaproteobacteria
Andreprevotia chitinilytica DSM 18519 [JONM]
315305
315379
+
Arg
CCT
[ENA]
¡û
>C09103777
CP001654
Gammaproteobacteria
Musicola paradisiaca Ech703 [CP001654]
3052546
3052620
+
Arg
CCT
[Ensembl]
¡û
>C09104499
CP001655
Gammaproteobacteria
Dickeya chrysanthemi Ech1591 [CP001655]
1520949
1520875
-
Arg
CCT
[Ensembl]
¡û
>W1911701681
QNUT01000046
Gammaproteobacteria
Dickeya sp. S29 [QNUT]
115472
115546
+
Arg
CCT
[ENA]
¡û
>W1810543389
QDKI01000001
Gammaproteobacteria
Brenneria roseae subsp. roseae LMG 27714 [QDKI]
285446
285372
-
Arg
CCT
[ENA]
¡û
>W2010152341
CAADJC010000002
Gammaproteobacteria
Leminorella grimontii NCTC12152 [CAADJC]
1586839
1586765
-
Arg
CCT
[ENA]
¡û
>W2010279862
CABMGD010000013
Gammaproteobacteria
Leminorella grimontii [CABMGD]
48553
48479
-
Arg
CCT
[ENA]
¡û
>W2011278265
QNUT01000046
Gammaproteobacteria
Dickeya sp. S29 [QNUT]
115472
115546
+
Arg
CCT
[ENA]
¡û
>W2011751362
SZPQ01000056
Alphaproteobacteria
Biostraticola sp. BGMRC 2031 [SZPQ]
18974
18900
-
Arg
CCT
[ENA]
¡û
>W2011753917
SZVX01000003
Gammaproteobacteria
Dickeya sp. ws52 [SZVX]
208283
208357
+
Arg
CCT
[ENA]
¡û
>W2110161453
JAAWVW010000005
Gammaproteobacteria
Musicola keenii A3967 [JAAWVW]
170307
170233
-
Arg
CCT
[ENA]
¡û
>W2110373738
JADRCP010000001
Gammaproteobacteria
Budviciaceae bacterium CWB-B4 [JADRCP]
958064
957990
-
Arg
CCT
[ENA]
¡û
>W2110471196
JAFCAF010000006
Gammaproteobacteria
Dickeya chrysanthemi EC16 [JAFCAF]
70654
70580
-
Arg
CCT
[ENA]
¡û
>C201309267
LR698987
Gammaproteobacteria
Leminorella richardii [LR698987]
1162656
1162582
-
Arg
CCT
-
¡û
>C211052188
CP040816
Gammaproteobacteria
Dickeya zeae A5410 [CP040816]
1034187
1034113
-
Arg
CCT
-
¡û
>W10106298
ACYK01000004
Gammaproteobacteria
Dickeya parazeae Ech586 [ACYK]
53526
53452
-
Arg
CCT
[ENA]
¡û
>W2110710837
JAIZFX010000033
Gammaproteobacteria
Dickeya chrysanthemi A604-S21-A17 [JAIZFX]
94481
94555
+
Arg
CCT
[ENA]
¡û
>C231046996
CP040815
Gammaproteobacteria
Dickeya zeae A5272 [CP040815]
1580781
1580707
-
Arg
CCT
-
¡û
>C231063642
CP053013
Gammaproteobacteria
Dickeya zeae MS_2014 [CP053013]
3155930
3156004
+
Arg
CCT
-
¡û
>C231436374
CP101400
Gammaproteobacteria
Dickeya zeae WH1 [CP101400]
3093053
3093127
+
Arg
CCT
-
¡û
>C231502968
CP106753
Betaproteobacteria
Chitiniphilus sp. CD1 [CP106753]
3046658
3046584
-
Arg
CCT
-
¡û
>C231558074
CP114280
Gammaproteobacteria
Dickeya lacustris LMG30899 [CP114280]
1221782
1221708
-
Arg
CCT
-
¡û
>W2310019174
BRLH01000010
Gammaproteobacteria
Leminorella grimontii JCM 5902 [BRLH]
72307
72381
+
Arg
CCT
[ENA]
¡û
>C10105102
CP001836
Gammaproteobacteria
Dickeya parazeae Ech586 [CP001836]
3165529
3165603
+
Arg
CCT
[Ensembl]
¡û
>W11108621
ACYK01000004
Gammaproteobacteria
Dickeya parazeae Ech586 [ACYK]
53526
53452
-
Arg
CCT
[ENA]
¡û
>W1511390693
JSYH01000027
Gammaproteobacteria
Dickeya chrysanthemi L11 [JSYH]
100595
100669
+
Arg
CCT
[ENA]
¡û
>W121126246
BAGV01000019
Gammaproteobacteria
Enterobacteriaceae bacterium B14 [BAGV]
403046
403120
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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