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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370169 (69 seq.)
>W131180549
ARNE01000021
Bacteroidota
Eudoraea adriatica DSM 19308 [ARNE]
6103
6031
-
Arg
CCT
[ENA]
¡û
>W1711223951
LXTR01000029
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
5021
4947
-
Arg
CCT
[ENA]
¡û
>WENV180208629
OBAJ01010478
[OBAJ] marine metagenome; Coastal water
83
11
-
Arg
CCT
[ENA]
¡û
>WENV180209615
OBAL01007460
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
901
973
+
Arg
CCT
[ENA]
¡û
>WENV180212378
OBAN01017856
[OBAN] marine metagenome; ENVO 00002150
224
296
+
Arg
CCT
[ENA]
¡û
>WENV180787969
ODIS01023363
[ODIS] human metagenome; G_DNA_Supragingival plaque
1778
1706
-
Arg
CCT
[ENA]
¡û
>WENV180951908
ODUH01072937
[ODUH] human metagenome; G_DNA_Subgingival plaque
83
11
-
Arg
CCT
[ENA]
¡û
>WENV181080097
OEAS01026579
[OEAS] human metagenome; G_DNA_Supragingival plaque
1583
1511
-
Arg
CCT
[ENA]
¡û
>WENV020177
AACY020548911
Marine microbial communities from Global Ocean Sampling (GOS)
2544
2620
+
Arg
CCT
[ENA]
>WENV183738254
PJUD01137945
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
401
329
-
Arg
CCT
[ENA]
¡û
>WENV183738459
PJUE01000002
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
490787
490715
-
Arg
CCT
[ENA]
¡û
>WENV183740736
PJUF01008059
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
456
528
+
Arg
CCT
[ENA]
¡û
>WENV170477524
CEVJ01081884
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
22429
22357
-
Arg
CCT
[ENA]
¡û
>WENV170478261
CEVK01028878
[CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
338
266
-
Arg
CCT
[ENA]
¡û
>WENV170626688
FUWD013228713
[FUWD] metagenome; unknown
1039
1111
+
Arg
CCT
[ENA]
¡û
>WENV170963796
MRWG01000794
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
21413
21487
+
Arg
CCT
[ENA]
¡û
>C181074421
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
317760
317832
+
Arg
CCT
-
¡û
>C181225830
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
343774
343702
-
Arg
CCT
-
¡û
>C191120523
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
1614030
1613958
-
Arg
CCT
-
¡û
>C191120559
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
2087484
2087556
+
Arg
CCT
-
¡û
>C191120896
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1237490
1237562
+
Arg
CCT
-
¡û
>C191120951
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1570207
1570135
-
Arg
CCT
-
¡û
>C191144598
CP035544
Bacteroidota
Muriicola soli MMS17-SY002 [CP035544]
65120
65192
+
Arg
CCT
-
¡û
>W141809564
JPRO01000044
Bacteroidota
Chryseobacterium luteum [JPRO]
1816
1742
-
Arg
CCT
[ENA]
¡û
>W1911190703
NQXA01000001
Bacteroidota
Leeuwenhoekiella nanhaiensis G18 [NQXA]
488892
488964
+
Arg
CCT
[ENA]
¡û
>W1911701357
QNUH01000006
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
190998
191070
+
Arg
CCT
[ENA]
¡û
>W1911749826
QWIV01000013
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
1030422
1030350
-
Arg
CCT
[ENA]
¡û
>W1810609209
QGTV01000003
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
145512
145440
-
Arg
CCT
[ENA]
¡û
>W1810686158
QKZW01000008
Bacteroidota
Salegentibacter mishustinae DSM 23404 [QKZW]
41745
41673
-
Arg
CCT
[ENA]
¡û
>SRA1023473
SRR035084.106146
454 Sequencing (SRP001805)
60
132
+
Arg
CCT
[SRA]
>SRA1024772
SRR035084.397798
454 Sequencing (SRP001805)
63
135
+
Arg
CCT
[SRA]
>W2010325552
CACVBR010000012
Bacteroidota
Chryseobacterium sp. CECT 9293 [CACVBR]
34659
34731
+
Arg
CCT
[ENA]
¡û
>W2010445997
JAABOP010000001
Bacteroidota
Muriicola jejuensis KCTC 22299 [JAABOP]
945861
945789
-
Arg
CCT
[ENA]
¡û
>W2010685515
JACEUX010000001
Bacteroidota
Chryseobacterium sp. cx-624 [JACEUX]
327813
327741
-
Arg
CCT
[ENA]
¡û
>W2011045123
NQXA01000001
Bacteroidota
Leeuwenhoekiella nanhaiensis G18 [NQXA]
488892
488964
+
Arg
CCT
[ENA]
¡û
>W2011277897
QNUH01000006
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
190998
191070
+
Arg
CCT
[ENA]
¡û
>W2011319071
QWIV01000013
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
1030422
1030350
-
Arg
CCT
[ENA]
¡û
>W2011441224
RJTU01000008
Bacteroidota
Chryseobacterium hominis DSM 22165 [RJTU]
28999
29071
+
Arg
CCT
[ENA]
¡û
>W2011479232
RQPJ01000001
Bacteroidota
Arenibacter sp. GUO666 [RQPJ]
523094
523022
-
Arg
CCT
[ENA]
¡û
>SRA1051791
SRR035098.77166
454 Sequencing (SRP001819)
222
150
-
Arg
CCT
[SRA]
>SRA1053676
SRR035098.464795
454 Sequencing (SRP001819)
241
313
+
Arg
CCT
[SRA]
>W2110022426
BMFH01000001
Bacteroidota
Muriicola marianensis CGMCC 1.12606 [BMFH]
1527469
1527397
-
Arg
CCT
[ENA]
¡û
>W2110181311
JABTCG010000002
Bacteroidota
Maribacter arenosus CAU 1321 [JABTCG]
332057
331985
-
Arg
CCT
[ENA]
¡û
>W2110303814
JADCLT010000001
Bacteroidota
Chryseobacterium culicis B1 [JADCLT]
2311688
2311760
+
Arg
CCT
[ENA]
¡û
>W2110512171
JAFLQX010000003
Bacteroidota
Salegentibacter sp. BDJ18 [JAFLQX]
167734
167662
-
Arg
CCT
[ENA]
¡û
>W2110556578
JAGJCA010000001
Bacteroidota
Chryseobacterium sp. cx-311 [JAGJCA]
119621
119549
-
Arg
CCT
[ENA]
¡û
>W2110662037
JAHXYG010000004
Bacteroidota
Chryseobacterium lathyri EST11A [JAHXYG]
275500
275572
+
Arg
CCT
[ENA]
¡û
>W2110662099
JAHXYH010000003
Bacteroidota
Chryseobacterium sp. OSA05B [JAHXYH]
533857
533929
+
Arg
CCT
[ENA]
¡û
>C201150234
CP044507
Bacteroidota
Chryseobacterium sp. SNU WT7 [CP044507]
1414237
1414309
+
Arg
CCT
-
¡û
>C201244936
CP050993
Bacteroidota
Chryseobacterium sp. NEB161 [CP050993]
1002897
1002825
-
Arg
CCT
-
¡û
>C201302666
CP059472
Bacteroidota
Chryseobacterium sp. cx-624 [CP059472]
379645
379717
+
Arg
CCT
-
¡û
>W2110724320
JAJBZG010000005
Bacteroidota
Gramella sp. ASW11-100T [JAJBZG]
620468
620540
+
Arg
CCT
[ENA]
¡û
>C231342905
CP094326
Bacteroidota
Zhouia spongiae HN-Y44 [CP094326]
1544047
1543975
-
Arg
CCT
-
¡û
>C231343463
CP094358
Bacteroidota
Abyssalbus ytuae MT3330 [CP094358]
2391966
2392038
+
Arg
CCT
-
¡û
>C231541983
CP111121
Bacteroidota
Chryseobacterium sp. MMS21-Ot14 [CP111121]
310463
310391
-
Arg
CCT
-
¡û
>C241199136
CP107030
Bacteroidota
Maribacter halichondriae Hal144 [CP107030]
2259722
2259794
+
Arg
CCT
-
¡û
>W1511685118
LFND01000005
Bacteroidota
Chryseobacterium angstadtii KM [LFND]
226550
226478
-
Arg
CCT
[ENA]
¡û
>WENV046625
AACY022612738
Marine microbial communities from Global Ocean Sampling (GOS)
524
600
+
Arg
CCT
[ENA]
>WENV054593
AACY023178693
Marine microbial communities from Global Ocean Sampling (GOS)
235
311
+
Arg
CCT
[ENA]
>WENV055286
AACY023219335
Marine microbial communities from Global Ocean Sampling (GOS)
390
314
-
Arg
CCT
[ENA]
>W1611008322
LXTR01000029
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
5021
4947
-
Arg
CCT
[ENA]
¡û
>W1710514903
FNBH01000003
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
178613
178539
-
Arg
CCT
[ENA]
¡û
>W1710540299
FNWQ01000002
Bacteroidota
Chryseobacterium culicis [FNWQ]
331315
331241
-
Arg
CCT
[ENA]
¡û
>W1710540564
FNWX01000013
Bacteroidota
Epilithonimonas hominis [FNWX]
51568
51496
-
Arg
CCT
[ENA]
¡û
>W1710570420
FOVD01000003
Bacteroidota
Chryseobacterium oleae [FOVD]
267369
267441
+
Arg
CCT
[ENA]
¡û
>W1710570421
FOVD01000003
Bacteroidota
Chryseobacterium oleae [FOVD]
270304
270378
+
Arg
CCT
[ENA]
¡û
>W1710589886
FRAM01000004
Bacteroidota
Epilithonimonas mollis molle [FRAM]
151170
151244
+
Arg
CCT
[ENA]
¡û
>W1710600178
FTPU01000005
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
29424
29350
-
Arg
CCT
[ENA]
¡û
>W1710608038
FXAO01000006
Bacteroidota
Arenibacter troitsensis [FXAO]
323340
323266
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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