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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370202 (72 seq.)
>W131211921
ATNM01000134
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
99734
99808
+
Arg
CCT
[ENA]
¡û
>WENV183631139
OOGU01039974
[OOGU] marine metagenome; sea ice
191
119
-
Arg
CCT
[ENA]
¡û
>WENV183704029
PDWI01000006
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
93703
93775
+
Arg
CCT
[ENA]
¡û
>WENV183719466
PDWJ01014544
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1945
1873
-
Arg
CCT
[ENA]
¡û
>WENV170172448
CEOQ01120326
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1705
1631
-
Arg
CCT
[ENA]
¡û
>WENV170229676
CEQG01146765
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
515
589
+
Arg
CCT
[ENA]
¡û
>WENV170229749
CEQG01153578
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
19307
19379
+
Arg
CCT
[ENA]
¡û
>WENV170482655
CEVM01048879
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
191
119
-
Arg
CCT
[ENA]
¡û
>WENV170639127
JFJP01001094
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4893
4818
-
Arg
CCT
[ENA]
¡û
>WENV170672937
LAZR01003494
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
4663
4591
-
Arg
CCT
[ENA]
¡û
>WENV170914708
MDTE01152774
[MDTE] marine metagenome; seawater
5363
5437
+
Arg
CCT
[ENA]
¡û
>WENV170922101
MDTG01025582
[MDTG] marine metagenome; seawater
121
47
-
Arg
CCT
[ENA]
¡û
>C181074235
CP022957
Bacteroidota
Maribacter cobaltidurans B1 [CP022957]
1510241
1510313
+
Arg
CCT
-
¡û
>C191127759
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
2755849
2755777
-
Arg
CCT
-
¡û
>C191182102
CP040710
Bacteroidota
Aggregatimonas sangjinii F202Z8 [CP040710]
3787848
3787920
+
Arg
CCT
-
¡û
>W141807482
JPOL01000002
Bacteroidota
Flavimarina sp. Hel_I_48 MAR_2009_132 [JPOL]
1388188
1388116
-
Arg
CCT
[ENA]
¡û
>W1910547504
FZNV01000001
Bacteroidota
Maribacter sedimenticola DSM 19840 [FZNV]
302124
302196
+
Arg
CCT
[ENA]
¡û
>W1910693568
MDGL01000149
Bacteroidota
Maribacter sp. 4G9 [MDGL]
11591
11663
+
Arg
CCT
[ENA]
¡û
>W1910693625
MDGN01000029
Bacteroidota
Maribacter sp. 4U21 [MDGN]
99667
99595
-
Arg
CCT
[ENA]
¡û
>W1911740775
QUSX01000001
Bacteroidota
Maribacter sp. PoM-212 [QUSX]
951878
951950
+
Arg
CCT
[ENA]
¡û
>W1911767829
QXFI01000011
Bacteroidota
Muricauda sp. 72 [QXFI]
97082
97154
+
Arg
CCT
[ENA]
¡û
>W1911767864
QXFJ01000009
Bacteroidota
Muricauda sp. NH166 [QXFJ]
151695
151623
-
Arg
CCT
[ENA]
¡û
>W1911768125
QXFO01000027
Bacteroidota
Muricauda taeanensis JCM 17757 [QXFO]
134642
134714
+
Arg
CCT
[ENA]
¡û
>W1810120911
PHTZ01000001
Bacteroidota
Flavobacteriaceae bacterium MAR_2009_75 MAR_2009_75 Mar_2009_75 [PHTZ]
2750952
2751024
+
Arg
CCT
[ENA]
¡û
>W1810513775
QBTW01000011
Bacteroidota
Muricauda brasiliensis K001 [QBTW]
126706
126634
-
Arg
CCT
[ENA]
¡û
>W1810514337
QBUK01000005
Bacteroidota
Allomuricauda amoyensis GCL-11 [QBUK]
137983
138055
+
Arg
CCT
[ENA]
¡û
>W1810595442
QGEG01000001
Bacteroidota
Allomuricauda koreensis ECD12 [QGEG]
432738
432666
-
Arg
CCT
[ENA]
¡û
>W1810596581
QGGQ01000006
Bacteroidota
Maribacter polysiphoniae DSM 23514 [QGGQ]
250679
250751
+
Arg
CCT
[ENA]
¡û
>W1810858633
QTJX01000002
Bacteroidota
Allomuricauda nanhaiensis SM1704 [QTJX]
1022514
1022586
+
Arg
CCT
[ENA]
¡û
>C151090002
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
1589315
1589389
+
Arg
CCT
[Ensembl]
¡û
>W2010104653
BJYV01000007
Bacteroidota
Cyclobacterium qasimii NBRC 106168 [BJYV]
323276
323348
+
Arg
CCT
[ENA]
¡û
>W2010429265
FZNV01000001
Bacteroidota
Maribacter sedimenticola DSM 19840 [FZNV]
302124
302196
+
Arg
CCT
[ENA]
¡û
>W2010437281
JAAAMI010000001
Bacteroidota
Muricauda sp. 40Bstr401 [JAAAMI]
857263
857335
+
Arg
CCT
[ENA]
¡û
>W2010567726
JAATJJ010000001
Bacteroidota
Saonia flava DSM 29762 [JAATJJ]
2492787
2492859
+
Arg
CCT
[ENA]
¡û
>W2010569368
JAATON010000002
Bacteroidota
Croceivirga sp. JEA036 [JAATON]
637537
637609
+
Arg
CCT
[ENA]
¡û
>W2010577909
JAAWWL010000001
Bacteroidota
Muricauda sp. DJ-13 [JAAWWL]
677918
677846
-
Arg
CCT
[ENA]
¡û
>W2010827382
MDGL01000149
Bacteroidota
Maribacter sp. 4G9 [MDGL]
11591
11663
+
Arg
CCT
[ENA]
¡û
>W2010827439
MDGN01000029
Bacteroidota
Maribacter sp. 4U21 [MDGN]
99667
99595
-
Arg
CCT
[ENA]
¡û
>W2011306223
QUSX01000001
Bacteroidota
Maribacter sp. PoM-212 [QUSX]
951878
951950
+
Arg
CCT
[ENA]
¡û
>W2011325351
QXFI01000011
Bacteroidota
Muricauda sp. 72 [QXFI]
97082
97154
+
Arg
CCT
[ENA]
¡û
>W2011325386
QXFJ01000009
Bacteroidota
Muricauda sp. NH166 [QXFJ]
151695
151623
-
Arg
CCT
[ENA]
¡û
>W2011325647
QXFO01000027
Bacteroidota
Muricauda taeanensis JCM 17757 [QXFO]
134642
134714
+
Arg
CCT
[ENA]
¡û
>W2011650469
SNYI01000001
Bacteroidota
Zeaxanthinibacter enoshimensis DSM 18435 [SNYI]
421330
421258
-
Arg
CCT
[ENA]
¡û
>W2011966840
VBUK01000001
Bacteroidota
Maripseudobacter aurantiacus KCTC 52409 [VBUK]
12623
12695
+
Arg
CCT
[ENA]
¡û
>W2012039286
VIKU02000004
Bacteroidota
Flavobacteriaceae bacterium TP-CH-4 [VIKU]
266230
266158
-
Arg
CCT
[ENA]
¡û
>W2012042097
VISB01000001
Bacteroidota
Maribacter sp. MAR_2009_72 [VISB]
3135065
3135137
+
Arg
CCT
[ENA]
¡û
>W2012097822
VNIK02000002
Bacteroidota
Muricauda sp. MT-229 [VNIK]
331486
331414
-
Arg
CCT
[ENA]
¡û
>W2012098735
VNWK01000011
Bacteroidota
Muricauda sp. 72 [VNWK]
97082
97154
+
Arg
CCT
[ENA]
¡û
>W2012098770
VNWL01000008
Bacteroidota
Muricauda sp. NH166 [VNWL]
151695
151623
-
Arg
CCT
[ENA]
¡û
>W2012136957
VTDH01000001
Bacteroidota
Cyclobacterium marinum Atlantic-IS [VTDH]
551463
551535
+
Arg
CCT
[ENA]
¡û
>W2012156651
VUOE01000001
Bacteroidota
Maribacter flavus KCTC 42508 [VUOE]
1149818
1149890
+
Arg
CCT
[ENA]
¡û
>W2012337707
WIOK01000006
Bacteroidota
Cyclobacterium xiamenense CGMCC 1.12432 [WIOK]
86357
86429
+
Arg
CCT
[ENA]
¡û
>W2012357183
WKJH01000005
Bacteroidota
Maribacter luteus RZ05 [WKJH]
34187
34259
+
Arg
CCT
[ENA]
¡û
>W2012509861
WXYP01000004
Bacteroidota
Flavobacteriaceae bacterium R38 [WXYP]
370818
370890
+
Arg
CCT
[ENA]
¡û
>W2110027806
BMJL01000006
Bacteroidota
Maribacter cobaltidurans CGMCC 1.15508 [BMJL]
240473
240401
-
Arg
CCT
[ENA]
¡û
>W2110181293
JABTCF010000011
Bacteroidota
Maribacter sp. ANRC-HE7 [JABTCF]
49090
49162
+
Arg
CCT
[ENA]
¡û
>W2110259265
JACSOH010000002
Bacteroidota
Cytophaga sp. FL35 [JACSOH]
243325
243253
-
Arg
CCT
[ENA]
¡û
>W2110281011
JACWLN010000005
Bacteroidota
Maribacter polysiphoniae KCTC 22021 [JACWLN]
250678
250750
+
Arg
CCT
[ENA]
¡û
>W2110287012
JACYFJ010000001
Bacteroidota
Euzebyella saccharophila 7SM30 [JACYFJ]
156846
156774
-
Arg
CCT
[ENA]
¡û
>W2110287052
JACYFK010000001
Bacteroidota
Euzebyella marina CY01 [JACYFK]
584037
583965
-
Arg
CCT
[ENA]
¡û
>W2110462929
JAFBGM010000001
Bacteroidota
Aurantibacter crassamenti HG732 [JAFBGM]
1197688
1197760
+
Arg
CCT
[ENA]
¡û
>W2110511840
JAFLNM010000002
Bacteroidota
Muricauda lutimaris BC31-3-A3 [JAFLNM]
615033
615105
+
Arg
CCT
[ENA]
¡û
>W2110556966
JAGJEC010000001
Bacteroidota
Maribacter sp. MMG018 [JAGJEC]
1047489
1047417
-
Arg
CCT
[ENA]
¡û
>C231486525
CP104205
Bacteroidota
Maribacter sp. HL-LV01 [CP104205]
181507
181435
-
Arg
CCT
-
¡û
>C241174055
CP058595
Bacteroidota
Costertonia aggregata KCCM 42265 [CP058595]
1326401
1326329
-
Arg
CCT
-
¡û
>C241199189
CP107031
Bacteroidota
Maribacter aestuarii JCM18631 [CP107031]
2086695
2086623
-
Arg
CCT
-
¡û
>C11105707
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
1633816
1633890
+
Arg
CCT
[Ensembl]
¡û
>W1511627008
LDAS01000001
Bacteroidota
Maribacter thermophilus HT7-2 [LDAS]
2672020
2672092
+
Arg
CCT
[ENA]
¡û
>W1710513962
FNAO01000001
Bacteroidota
Pricia antarctica [FNAO]
334595
334521
-
Arg
CCT
[ENA]
¡û
>W1710542620
FNZH01000002
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
552048
551974
-
Arg
CCT
[ENA]
¡û
>W1710557242
FOKU01000005
Bacteroidota
Allomuricauda taeanensis antarctica [FOKU]
166113
166185
+
Arg
CCT
[ENA]
¡û
>W1710590160
FRAT01000007
Bacteroidota
Allomuricauda taeanensis antarctica [FRAT]
166762
166834
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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