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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370393 (33 seq.)
>W1710860790
LMDD01000007
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
1527357
1527283
-
Lys
TTT
[ENA]
¡û
>W1710860885
LMDF01000007
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
1027930
1027856
-
Lys
TTT
[ENA]
¡û
>W1710865959
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
149870
149944
+
Lys
TTT
[ENA]
¡û
>W1710867684
LMIM01000001
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
620278
620204
-
Lys
TTT
[ENA]
¡û
>WENV180015683
FSST01000062
[FSST] metagenome; soil
4565
4491
-
Lys
TTT
[ENA]
¡û
>WENV180020325
FTCZ01001597
[FTCZ] metagenome; soil
26685
26611
-
Lys
TTT
[ENA]
¡û
>WENV180030631
FTJN01001439
[FTJN] metagenome; soil
20546
20472
-
Lys
TTT
[ENA]
¡û
>WENV180033730
FTKL01060439
[FTKL] metagenome; soil
112
186
+
Lys
TTT
[ENA]
¡û
>WENV180292760
OBIV01610488
[OBIV] soil metagenome; Clay
260
186
-
Lys
TTT
[ENA]
¡û
>WENV181223381
OFDC01010113
[OFDC] hot springs metagenome; Water
750
676
-
Lys
TTT
[ENA]
¡û
>WENV170002926
AGTN01170993
[AGTN] bioreactor metagenome; poplar biomass
351
425
+
Lys
TTT
[ENA]
¡û
>WENV170565560
FJVY01000493
[FJVY] metagenome; soil
512
586
+
Lys
TTT
[ENA]
¡û
>C181078956
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
2352650
2352576
-
Lys
TTT
-
¡û
>W141819052
JQLZ01000008
Alphaproteobacteria
Caulobacter henricii [JQLZ]
11655
11729
+
Lys
TTT
[ENA]
¡û
>W1810069311
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
1916730
1916804
+
Lys
TTT
[ENA]
¡û
>W1810073514
PEGG01000083
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
4313
4387
+
Lys
TTT
[ENA]
¡û
>W2010696293
JACHCS010000001
Alphaproteobacteria
Caulobacter sp. YL-Caulobacter [JACHCS]
2625064
2625138
+
Lys
TTT
[ENA]
¡û
>W2010724534
JACIDK010000001
Alphaproteobacteria
Phenylobacterium haematophilum DSM 21793 [JACIDK]
446573
446647
+
Lys
TTT
[ENA]
¡û
>W2011485996
RRYI01000004
Alphaproteobacteria
Caulobacter sp. 602-1 [RRYI]
140565
140639
+
Lys
TTT
[ENA]
¡û
>W2011642345
SMZP01000011
Alphaproteobacteria
Caulobacter sp. RHG1 [SMZP]
134100
134026
-
Lys
TTT
[ENA]
¡û
>W2110569125
JAGSGD010000001
Alphaproteobacteria
Phenylobacterium sp. 20VBR1 [JAGSGD]
1930891
1930817
-
Lys
TTT
[ENA]
¡û
>C211399736
CP082923
Alphaproteobacteria
Caulobacter segnis CBR1 [CP082923]
2842188
2842114
-
Lys
TTT
-
¡û
>C231365728
CP096040
Alphaproteobacteria
Caulobacter segnis RL271 [CP096040]
3309478
3309404
-
Lys
TTT
-
¡û
>C231561322
CP114599
Alphaproteobacteria
Phenylobacterium sp. NIBR 498073 [CP114599]
2259450
2259524
+
Lys
TTT
-
¡û
>C231562995
CP114871
Alphaproteobacteria
Caulobacter sp. NIBR2454 [CP114871]
1296593
1296519
-
Lys
TTT
-
¡û
>C231566364
CP115463
Alphaproteobacteria
Caulobacter sp. NIBR1757 [CP115463]
1568660
1568734
+
Lys
TTT
-
¡û
>W1511432275
JUGJ01000016
Alphaproteobacteria
Caulobacter sp. OV484 [JUGJ]
242093
242167
+
Lys
TTT
[ENA]
¡û
>C161049348
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
1694886
1694960
+
Lys
TTT
[Ensembl]
¡û
>W121086787
AKKF01000273
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
4321
4395
+
Lys
TTT
[ENA]
¡û
>W1610723136
LMDD01000007
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
1527357
1527283
-
Lys
TTT
[ENA]
¡û
>W1610723231
LMDF01000007
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
1027930
1027856
-
Lys
TTT
[ENA]
¡û
>W1610728305
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
149870
149944
+
Lys
TTT
[ENA]
¡û
>W1610730030
LMIM01000001
Alphaproteobacteria
Phenylobacterium sp. Root77 [LMIM]
620278
620204
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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