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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370396 (21 seq.)
>W1710863475
LMFD01000012
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
303717
303791
+
Asn
GTT
[ENA]
¡û
>w018503
AATH01000005
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
188840
188914
+
Asn
GTT
[ENA]
¡û
>WENV180034232
FTKP01029980
[FTKP] metagenome; soil
109
35
-
Asn
GTT
[ENA]
¡û
>WENV180034256
FTKP01079344
[FTKP] metagenome; soil
5
79
+
Asn
GTT
[ENA]
¡û
>WENV183673233
ORJL011258465
[ORJL] groundwater metagenome; groundwater
471
545
+
Asn
GTT
[ENA]
¡û
>WENV183681332
ORMF010291156
[ORMF] groundwater metagenome; groundwater
781
855
+
Asn
GTT
[ENA]
¡û
>WENV183693596
ORMF012106636
[ORMF] groundwater metagenome; groundwater
414
340
-
Asn
GTT
[ENA]
¡û
>C191119759
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
1488575
1488649
+
Asn
GTT
-
¡û
>C191119760
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
1488785
1488859
+
Asn
GTT
-
¡û
>W1810069328
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
3059388
3059314
-
Asn
GTT
[ENA]
¡û
>W1810069329
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
3059155
3059081
-
Asn
GTT
[ENA]
¡û
>W1810073484
PEGF01000002
Alphaproteobacteria
Caulobacter sp. X [PEGF]
1857045
1857119
+
Asn
GTT
[ENA]
¡û
>W1810073485
PEGF01000002
Alphaproteobacteria
Caulobacter sp. X [PEGF]
1857276
1857350
+
Asn
GTT
[ENA]
¡û
>W1810543650
QDKO01000021
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
174178
174252
+
Asn
GTT
[ENA]
¡û
>W1810543651
QDKO01000021
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
174397
174471
+
Asn
GTT
[ENA]
¡û
>W1810543753
QDKQ01000056
Alphaproteobacteria
Caulobacter endophyticus 774 [QDKQ]
74073
73999
-
Asn
GTT
[ENA]
¡û
>W1810543754
QDKQ01000056
Alphaproteobacteria
Caulobacter endophyticus 774 [QDKQ]
73854
73780
-
Asn
GTT
[ENA]
¡û
>W2010488591
JAAIVC010000101
Alphaproteobacteria
Caulobacter sp. 17J65-9 [JAAIVC]
12454
12528
+
Asn
GTT
[ENA]
¡û
>C211399703
CP082923
Alphaproteobacteria
Caulobacter segnis CBR1 [CP082923]
2023373
2023447
+
Asn
GTT
-
¡û
>C211399704
CP082923
Alphaproteobacteria
Caulobacter segnis CBR1 [CP082923]
2023605
2023679
+
Asn
GTT
-
¡û
>C231562997
CP114871
Alphaproteobacteria
Caulobacter sp. NIBR2454 [CP114871]
1220980
1220906
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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