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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370403 (66 seq.)
>W1710865212
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
1298040
1297968
-
Gln
CTG
[ENA]
¡û
>W1710866815
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
1727885
1727957
+
Gln
CTG
[ENA]
¡û
>W1710868157
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
275420
275492
+
Gln
CTG
[ENA]
¡û
>W1710868659
LMJG01000006
Actinomycetota
Oerskovia sp. Root918 [LMJG]
10488
10416
-
Gln
CTG
[ENA]
¡û
>W1711094514
LTFZ01000016
Actinomycetota
Rothia sp. HMSC065G12 [LTFZ]
8357
8283
-
Gln
CTG
[ENA]
¡û
>W131179580
ARMM01000016
Actinomycetota
Gulosibacter faecalis ATCC 13722 [ARMM]
42894
42820
-
Gln
CTG
[ENA]
¡û
>W131185534
ARTT01000011
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
306899
306827
-
Gln
CTG
[ENA]
¡û
>W1711312300
MAST01000012
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
325765
325693
-
Gln
CTG
[ENA]
¡û
>W1711517418
MLJO01000005
Actinomycetota
Intrasporangium flavum flava [MLJO]
81229
81157
-
Gln
CTG
[ENA]
¡û
>W1711768782
MVDF01000039
Actinomycetota
Micrococcus sp. KBS0714 [MVDF]
151570
151644
+
Gln
CTG
[ENA]
¡û
>W131230358
AUHN01000010
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
301988
301916
-
Gln
CTG
[ENA]
¡û
>WENV180725821
ODGS01003367
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
1708
1636
-
Gln
CTG
[ENA]
¢þ
>WENV180738786
ODHD01000521
[ODHD] human metagenome; G_DNA_Supragingival plaque
2323
2251
-
Gln
CTG
[ENA]
¢þ
>WENV180754982
ODHU01005894
[ODHU] human metagenome; G_DNA_Supragingival plaque
1152
1080
-
Gln
CTG
[ENA]
¢þ
>WENV180755039
ODHU01008790
[ODHU] human metagenome; G_DNA_Supragingival plaque
1485
1557
+
Gln
CTG
[ENA]
¢þ
>WENV180887402
ODMI01000943
[ODMI] human metagenome; G_DNA_Buccal mucosa
1946
2018
+
Gln
CTG
[ENA]
¢þ
>WENV180924434
ODTK01004898
[ODTK] human metagenome; G_DNA_Supragingival plaque
2567
2495
-
Gln
CTG
[ENA]
¢þ
>WENV180937816
ODTX01000097
[ODTX] human metagenome; G_DNA_Supragingival plaque
194
266
+
Gln
CTG
[ENA]
¢þ
>WENV180938543
ODTX01003002
[ODTX] human metagenome; G_DNA_Supragingival plaque
1047
1119
+
Gln
CTG
[ENA]
¢þ
>WENV180963921
ODUO01000031
[ODUO] human metagenome; G_DNA_Supragingival plaque
6648
6720
+
Gln
CTG
[ENA]
¢þ
>WENV180973759
ODUW01017559
[ODUW] human metagenome; G_DNA_Supragingival plaque
1854
1782
-
Gln
CTG
[ENA]
¢þ
>WENV180973822
ODUW01020745
[ODUW] human metagenome; G_DNA_Supragingival plaque
533
461
-
Gln
CTG
[ENA]
¢þ
>WENV180989360
ODVL01131777
[ODVL] human metagenome; G_DNA_Tongue dorsum
90
18
-
Gln
CTG
[ENA]
¢þ
>WENV180999370
ODVT01015761
[ODVT] human metagenome; G_DNA_Buccal mucosa
202
274
+
Gln
CTG
[ENA]
¢þ
>WENV181010590
ODWH01078563
[ODWH] human metagenome; G_DNA_Buccal mucosa
197
125
-
Gln
CTG
[ENA]
¢þ
>WENV181012245
ODWK01000001
[ODWK] human metagenome; G_DNA_Supragingival plaque
223514
223586
+
Gln
CTG
[ENA]
¢þ
>WENV181029248
ODXF01000034
[ODXF] human metagenome; G_DNA_Supragingival plaque
29266
29194
-
Gln
CTG
[ENA]
¢þ
>WENV181029251
ODXF01000035
[ODXF] human metagenome; G_DNA_Supragingival plaque
96135
96063
-
Gln
CTG
[ENA]
¢þ
>WENV181069603
ODZZ01111000
[ODZZ] human metagenome; G_DNA_Tongue dorsum
196
268
+
Gln
CTG
[ENA]
¢þ
>WENV181107134
OEEI01002364
[OEEI] human metagenome; G_DNA_Supragingival plaque
1016
1088
+
Gln
CTG
[ENA]
¢þ
>WENV181107328
OEEI01005021
[OEEI] human metagenome; G_DNA_Supragingival plaque
152
80
-
Gln
CTG
[ENA]
¢þ
>WENV181146522
OEHQ01008152
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2698
2626
-
Gln
CTG
[ENA]
¢þ
>WENV181156493
OEIE01021609
[OEIE] human metagenome; G_DNA_Supragingival plaque
994
1066
+
Gln
CTG
[ENA]
¢þ
>W141143082
AWSA01000035
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
10409
10337
-
Gln
CTG
[ENA]
¡û
>W141484649
JFYU01000001
Actinomycetota
Micrococcus luteus [JFYU]
93525
93451
-
Gln
CTG
[ENA]
¡û
>C181062040
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
374042
373970
-
Gln
CTG
-
¡û
>C181120745
CP025616
Actinomycetota
Micrococcus luteus SGAir0127 [CP025616]
803849
803777
-
Gln
CTG
-
¡û
>C181193521
CP030862
Actinomycetota
Streptomyces globosus LZH-48 [CP030862]
1384923
1384995
+
Gln
CTG
-
¡û
>C181199725
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
1477866
1477794
-
Gln
CTG
-
¡û
>C181212468
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
1820556
1820484
-
Gln
CTG
-
¡û
>C191138517
CP035298
Actinomycetota
Micrococcus luteus ATCC 4698 [CP035298]
2492433
2492361
-
Gln
CTG
-
¡û
>W141757706
JNYC01000021
Actinomycetota
Streptomyces virginiae [JNYC]
9226
9298
+
Gln
CTG
[ENA]
¡û
>W141761577
JOAV01001032
Actinomycetota
Streptomyces sp. NRRL S-50 [JOAV]
6744
6816
+
Gln
CTG
[ENA]
¡û
>W141773513
JOIN01000001
Actinomycetota
Corynebacterium variabile [JOIN]
840440
840368
-
Gln
CTG
[ENA]
¡û
>W1910442544
FWFH01000159
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
1714
1786
+
Gln
CTG
[ENA]
¡û
>W1910871557
NCXE01000013
Actinomycetota
Micrococcus luteus KR [NCXE]
32682
32610
-
Gln
CTG
[ENA]
¡û
>W1911595573
PNGL01000002
Actinomycetota
Micrococcus lylae UMB0955 [PNGL]
136745
136673
-
Gln
CTG
[ENA]
¡û
>W1911726654
QSWH01000005
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
119290
119362
+
Gln
CTG
[ENA]
¡û
>W1810058229
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
2800677
2800749
+
Gln
CTG
[ENA]
¡û
>W1810190295
PKJT01000001
Actinomycetota
Micrococcus luteus UMB0038 [PKJT]
376236
376164
-
Gln
CTG
[ENA]
¡û
>W1510021900
BCAK01000008
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
95205
95133
-
Gln
CTG
[ENA]
¡û
>W10110630
ADCD01000017
Actinomycetota
Micrococcus luteus SK58 [ADCD]
4493
4419
-
Gln
CTG
[ENA]
¡û
>C10101573
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
2080277
2080205
-
Gln
CTG
[Ensembl]
¡û
>W11113067
ADCD01000017
Actinomycetota
Micrococcus luteus SK58 [ADCD]
4493
4419
-
Gln
CTG
[ENA]
¡û
>W1511316280
JPVS01000005
Actinomycetota
Rothia aeria C6D [JPVS]
141348
141422
+
Gln
CTG
[ENA]
¡û
>W1511326128
JQHE01000011
Actinomycetota
Rothia aeria C6B [JQHE]
141341
141415
+
Gln
CTG
[ENA]
¡û
>W1511534744
JYOE01000020
Actinomycetota
Terrabacter sp. 28 [JYOE]
48862
48934
+
Gln
CTG
[ENA]
¡û
>W11177862
AGBX01000007
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
504877
504805
-
Gln
CTG
[ENA]
¡û
>C161016716
CP007437
Actinomycetota
Micrococcus luteus trpE16 [CP007437]
935909
935983
+
Gln
CTG
[Ensembl]
¡û
>W1610027192
AVPL01000003
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
108854
108928
+
Gln
CTG
[ENA]
¡û
>W1610727558
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
1298040
1297968
-
Gln
CTG
[ENA]
¡û
>W1610729161
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
1727885
1727957
+
Gln
CTG
[ENA]
¡û
>W1610730503
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
275420
275492
+
Gln
CTG
[ENA]
¡û
>W1610731005
LMJG01000006
Actinomycetota
Oerskovia sp. Root918 [LMJG]
10488
10416
-
Gln
CTG
[ENA]
¡û
>W1710023357
AVPL01000003
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
108854
108928
+
Gln
CTG
[ENA]
¡û
>W1710561221
FONZ01000002
Actinomycetota
Flavimobilis marinus [FONZ]
741419
741347
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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