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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370406 (116 seq.)
>W1710809739
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
264
338
+
Glu
TTC
[ENA]
¡û
>W1710926839
LOES01000083
Bacillota
Clostridia bacterium BRH_c25 [LOES]
6347
6421
+
Glu
TTC
[ENA]
¡û
>W1711222532
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
3577275
3577349
+
Glu
TTC
[ENA]
¡û
>W1711222536
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
4092717
4092791
+
Glu
TTC
[ENA]
¡û
>W1711409634
MGOX01000025
Bacillota
Clostridiales bacterium GWF2_36_10 [MGOX]
13394
13468
+
Glu
TTC
[ENA]
¡û
>WENV180445959
OBXA01057830
[OBXA] human gut metagenome; faeces
115
44
-
Glu
TTC
[ENA]
¡û
>WENV180446659
OBXC01000472
[OBXC] human gut metagenome; faeces
5205
5276
+
Glu
TTC
[ENA]
¡û
>WENV180446845
OBXC01001830
[OBXC] human gut metagenome; faeces
9450
9377
-
Glu
TTC
[ENA]
¡û
>WENV180446979
OBXC01005488
[OBXC] human gut metagenome; faeces
803
732
-
Glu
TTC
[ENA]
¡û
>WENV180455066
OBXO01000335
[OBXO] human gut metagenome; faeces
248
319
+
Glu
TTC
[ENA]
¡û
>WENV180455623
OBXO01015395
[OBXO] human gut metagenome; faeces
56
127
+
Glu
TTC
[ENA]
¡û
>WENV180541397
OCHR01124091
[OCHR] human gut metagenome; human gut
50
124
+
Glu
TTC
[ENA]
¡û
>WENV180629293
OCQP01070684
[OCQP] human gut metagenome; human gut
27
101
+
Glu
TTC
[ENA]
¡û
>WENV180630876
OCQT01229472
[OCQT] human gut metagenome; human gut
73
-1
-
Glu
TTC
[ENA]
¡û
>WENV180840777
ODKJ01009280
[ODKJ] human metagenome; G_DNA_Stool
85
11
-
Glu
TTC
[ENA]
¡û
>WENV180849065
ODKV01000062
[ODKV] human metagenome; G_DNA_Stool
45920
45846
-
Glu
TTC
[ENA]
¡û
>WENV180994716
ODVQ01261361
[ODVQ] human metagenome; G_DNA_Stool
164
90
-
Glu
TTC
[ENA]
¡û
>WENV181081562
OEAS01259085
[OEAS] human metagenome; G_DNA_Supragingival plaque
237
308
+
Glu
TTC
[ENA]
¡û
>WENV181118948
OEFH01053685
[OEFH] human metagenome; G_DNA_Stool
442
516
+
Glu
TTC
[ENA]
¡û
>W08011393
ABVG01000033
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
7759
7688
-
Glu
TTC
[ENA]
¡û
>WENV181340040
OFMG01008717
[OFMG] human gut metagenome; human gut
2407
2333
-
Glu
TTC
[ENA]
¡û
>WENV181343294
OFMJ01001004
[OFMJ] human gut metagenome; human gut
16492
16566
+
Glu
TTC
[ENA]
¡û
>WENV181661402
OGOG01002731
[OGOG] human gut metagenome; faeces
12290
12364
+
Glu
TTC
[ENA]
¡û
>WENV181702722
OGPJ01000619
[OGPJ] human gut metagenome; faeces
26458
26532
+
Glu
TTC
[ENA]
¡û
>WENV181739175
OGQI01070102
[OGQI] human gut metagenome; faeces
602
676
+
Glu
TTC
[ENA]
¡û
>WENV181742052
OGQK01009257
[OGQK] human gut metagenome; faeces
1117
1043
-
Glu
TTC
[ENA]
¡û
>WENV181750961
OGQP01017486
[OGQP] human gut metagenome; faeces
74
1
-
Glu
TTC
[ENA]
¡û
>WENV181909123
OGYB01011781
[OGYB] human gut metagenome; faeces
248
174
-
Glu
TTC
[ENA]
¡û
>WENV181915088
OGYF01002813
[OGYF] human gut metagenome; faeces
11135
11061
-
Glu
TTC
[ENA]
¡û
>WENV182031072
OHCS01002192
[OHCS] human gut metagenome; feces
5616
5542
-
Glu
TTC
[ENA]
¡û
>WENV182057822
OHEP01000481
[OHEP] human gut metagenome; feces
27255
27329
+
Glu
TTC
[ENA]
¡û
>WENV182125048
OHJS01000424
[OHJS] human gut metagenome; feces
16474
16548
+
Glu
TTC
[ENA]
¡û
>WENV182127038
OHJU01003348
[OHJU] human gut metagenome; feces
5193
5267
+
Glu
TTC
[ENA]
¡û
>WENV182142881
OHKU01027187
[OHKU] human gut metagenome; feces
823
897
+
Glu
TTC
[ENA]
¡û
>WENV182143308
OHKV01000423
[OHKV] human gut metagenome; feces
15943
16017
+
Glu
TTC
[ENA]
¡û
>WENV182149550
OHLH01002015
[OHLH] human gut metagenome; feces
8494
8568
+
Glu
TTC
[ENA]
¡û
>WENV182172142
OHMY01000429
[OHMY] human gut metagenome; feces
15943
16017
+
Glu
TTC
[ENA]
¡û
>WENV182180533
OHNO01002184
[OHNO] human gut metagenome; feces
1690
1764
+
Glu
TTC
[ENA]
¡û
>WENV182193023
OHPB01000483
[OHPB] human gut metagenome; feces
27383
27457
+
Glu
TTC
[ENA]
¡û
>WENV182197493
OHPH01004384
[OHPH] human gut metagenome; feces
441
367
-
Glu
TTC
[ENA]
¡û
>WENV182202167
OHPO01002031
[OHPO] human gut metagenome; feces
312
238
-
Glu
TTC
[ENA]
¡û
>WENV182212601
OHQG01002039
[OHQG] human gut metagenome; feces
5616
5542
-
Glu
TTC
[ENA]
¡û
>WENV182215772
OHQM01002130
[OHQM] human gut metagenome; feces
1690
1764
+
Glu
TTC
[ENA]
¡û
>WENV182219622
OHQR01003917
[OHQR] human gut metagenome; feces
5425
5499
+
Glu
TTC
[ENA]
¡û
>WENV182220465
OHQS01000415
[OHQS] human gut metagenome; feces
15998
16072
+
Glu
TTC
[ENA]
¡û
>WENV182255762
OHTD01003467
[OHTD] human gut metagenome; feces
5169
5243
+
Glu
TTC
[ENA]
¡û
>WENV182266911
OHTZ01000537
[OHTZ] human gut metagenome; feces
7779
7705
-
Glu
TTC
[ENA]
¡û
>WENV182274429
OHUK01000414
[OHUK] human gut metagenome; feces
15943
16017
+
Glu
TTC
[ENA]
¡û
>WENV182307737
OHXF01005494
[OHXF] human gut metagenome; feces
1948
2022
+
Glu
TTC
[ENA]
¡û
>WENV182327904
OHZB01009137
[OHZB] human gut metagenome; feces
1254
1328
+
Glu
TTC
[ENA]
¡û
>WENV182331631
OHZI01018279
[OHZI] human gut metagenome; feces
65
139
+
Glu
TTC
[ENA]
¡û
>WENV182345548
OIAN01029662
[OIAN] human gut metagenome; feces
430
504
+
Glu
TTC
[ENA]
¡û
>WENV182409592
OIFJ01000030
[OIFJ] human gut metagenome; stool
171034
170963
-
Glu
TTC
[ENA]
¡û
>WENV182409647
OIFJ01000072
[OIFJ] human gut metagenome; stool
5266
5337
+
Glu
TTC
[ENA]
¡û
>WENV182523841
OIWS01062055
[OIWS] human gut metagenome; faeces
675
748
+
Glu
TTC
[ENA]
¡û
>WENV182613738
OJKA01009304
[OJKA] metagenome; faeces
1091
1020
-
Glu
TTC
[ENA]
¡û
>WENV182635625
OJKY01103240
[OJKY] metagenome; faeces
181
107
-
Glu
TTC
[ENA]
¡û
>WENV182730491
OJPZ01000273
[OJPZ] human gut metagenome; stool sample
438
364
-
Glu
TTC
[ENA]
¡û
>WENV182752679
OJRB01036507
[OJRB] human gut metagenome; stool sample
131
205
+
Glu
TTC
[ENA]
¡û
>WENV182753414
OJRC01009997
[OJRC] human gut metagenome; stool sample
231
157
-
Glu
TTC
[ENA]
¡û
>WENV182754562
OJRD01032077
[OJRD] human gut metagenome; stool sample
545
619
+
Glu
TTC
[ENA]
¡û
>WENV182756400
OJRG01000548
[OJRG] human gut metagenome; stool sample
18814
18888
+
Glu
TTC
[ENA]
¡û
>WENV182766730
OJRU01001727
[OJRU] human gut metagenome; stool sample
428
354
-
Glu
TTC
[ENA]
¡û
>WENV182945362
OKVK01000041
[OKVK] human gut metagenome; human gut
95680
95754
+
Glu
TTC
[ENA]
¡û
>WENV182961559
OKWL01000056
[OKWL] human gut metagenome; stool
170939
170868
-
Glu
TTC
[ENA]
¡û
>WENV182961609
OKWL01000094
[OKWL] human gut metagenome; stool
16601
16672
+
Glu
TTC
[ENA]
¡û
>WENV182965824
OKWT01000345
[OKWT] human gut metagenome; stool
82
153
+
Glu
TTC
[ENA]
¡û
>WENV182965826
OKWT01000346
[OKWT] human gut metagenome; stool
5467
5396
-
Glu
TTC
[ENA]
¡û
>WENV182972140
OKXI01013870
[OKXI] human gut metagenome; human gut
1490
1416
-
Glu
TTC
[ENA]
¡û
>WENV183115996
OLNQ01039402
[OLNQ] human gut metagenome; faeces
852
926
+
Glu
TTC
[ENA]
¡û
>WENV183134989
OLOD01010579
[OLOD] human gut metagenome; faeces
358
284
-
Glu
TTC
[ENA]
¡û
>WENV183195920
OLPU01000019
[OLPU] human gut metagenome; faeces
110611
110685
+
Glu
TTC
[ENA]
¡û
>WENV183248341
OLRF01064525
[OLRF] human gut metagenome; faeces
659
732
+
Glu
TTC
[ENA]
¡û
>WENV183273002
OLRX01001432
[OLRX] human gut metagenome; faeces
13546
13472
-
Glu
TTC
[ENA]
¡û
>WENV183274984
OLRY01004164
[OLRY] human gut metagenome; faeces
1130
1204
+
Glu
TTC
[ENA]
¡û
>WENV183293283
OLSK01000188
[OLSK] human gut metagenome; faeces
59154
59228
+
Glu
TTC
[ENA]
¡û
>WENV183759719
PPYE01210706
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
613
687
+
Glu
TTC
[ENA]
¡û
>WENV170003681
AGTN01416284
[AGTN] bioreactor metagenome; poplar biomass
1273
1347
+
Glu
TTC
[ENA]
¡û
>WENV170056606
CDZG01008008
[CDZG] gut metagenome; human stools
538
464
-
Glu
TTC
[ENA]
¡û
>WENV170058330
CDZH01004677
[CDZH] gut metagenome; human stools
9757
9831
+
Glu
TTC
[ENA]
¡û
>WENV170070705
CDZQ01033557
[CDZQ] gut metagenome; human stools
26950
27024
+
Glu
TTC
[ENA]
¡û
>WENV170070746
CDZQ01035069
[CDZQ] gut metagenome; human stools
17593
17519
-
Glu
TTC
[ENA]
¡û
>WENV170563759
CZCB01028451
[CZCB] anaerobic digester metagenome; anaerobic digester
5442
5517
+
Glu
TTC
[ENA]
¡û
>WENV170645287
JMSV01000021
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
32005
32079
+
Glu
TTC
[ENA]
¡û
>WENV170724947
LSQX01324470
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
34199
34125
-
Glu
TTC
[ENA]
¡û
>WENV170967397
MTKW01001223
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13964
13890
-
Glu
TTC
[ENA]
¡û
>C181148359
CP027241
Bacillota
Lachnospiraceae bacterium oral taxon 500 W11650 [CP027241]
1116824
1116895
+
Glu
TTC
-
¡û
>W1810071100
PEDL01000016
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
90071
90000
-
Glu
TTC
[ENA]
¡û
>W1810071111
PEDL01000024
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
27745
27674
-
Glu
TTC
[ENA]
¡û
>W1810071132
PEDL01000042
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
512
583
+
Glu
TTC
[ENA]
¡û
>W1810071136
PEDL01000048
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
945
1016
+
Glu
TTC
[ENA]
¡û
>W2010561289
JAASRP010000001
Bacillota
Hungateiclostridium thermocellum DSM 1313 [JAASRP]
247990
248064
+
Glu
TTC
[ENA]
¡û
>W2010561294
JAASRP010000001
Bacillota
Hungateiclostridium thermocellum DSM 1313 [JAASRP]
686776
686850
+
Glu
TTC
[ENA]
¡û
>W2011483309
RQYD01000083
Bacillota
Clostridiales bacterium COT073_COT-073 [RQYD]
342
415
+
Glu
TTC
[ENA]
¡û
>W2012428992
WSLF01000007
Bacillota
Defluviitalea raffinosedens 249c-K6 [WSLF]
141946
141873
-
Glu
TTC
[ENA]
¡û
>W2110101800
CAJFOS010000014
Bacillota
Candidatus Allochristensenella caecavium [CAJFOS]
118221
118295
+
Glu
TTC
[ENA]
¡û
>W2110461447
JAFBEP010000001
Bacillota
Defluviitalea raffinosedens DSM 28090 [JAFBEP]
382655
382583
-
Glu
TTC
[ENA]
¡û
>W2110461476
JAFBEP010000011
Bacillota
Defluviitalea raffinosedens DSM 28090 [JAFBEP]
83817
83744
-
Glu
TTC
[ENA]
¡û
>W2110461498
JAFBEP010000023
Bacillota
Defluviitalea raffinosedens DSM 28090 [JAFBEP]
114
187
+
Glu
TTC
[ENA]
¡û
>C231248029
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
697022
697096
+
Glu
TTC
-
¡û
>C231248053
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
1186491
1186565
+
Glu
TTC
-
¡û
>C231394996
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
635028
635102
+
Glu
TTC
-
¡û
>C231395020
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
1149700
1149774
+
Glu
TTC
-
¡û
>W2110783240
WJBC01000070
Bacillota
Acetobacterium fimetarium DER-2019 [WJBC]
1033
959
-
Glu
TTC
[ENA]
¡û
>W2110783336
WJBE01000025
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
39348
39274
-
Glu
TTC
[ENA]
¡û
>W2110783344
WJBE01000040
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
5607
5533
-
Glu
TTC
[ENA]
¡û
>W1510725195
CXYW01000006
Bacillota
Niameybacter massiliensis mt14 [CXYW]
2961
3032
+
Glu
TTC
[ENA]
¡û
>W1510725216
CXYW01000009
Bacillota
Niameybacter massiliensis mt14 [CXYW]
185868
185797
-
Glu
TTC
[ENA]
¡û
>W1510725229
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
3388953
3388880
-
Glu
TTC
[ENA]
¡û
>W1510725235
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
3223833
3223762
-
Glu
TTC
[ENA]
¡û
>W1510725240
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
3223351
3223280
-
Glu
TTC
[ENA]
¡û
>W1510725265
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1794087
1794016
-
Glu
TTC
[ENA]
¡û
>C121003909
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3340589
3340515
-
Glu
TTC
[Ensembl]
¡û
>C121003933
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
2815643
2815569
-
Glu
TTC
[Ensembl]
¡û
>W1610784381
LOES01000083
Bacillota
Clostridia bacterium BRH_c25 [LOES]
6347
6421
+
Glu
TTC
[ENA]
¡û
>W1710726486
LFRR01000031
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
3825
3899
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK