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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370411 (103 seq.)
>W1711139027
LVEP01000028
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
19475
19549
+
Glu
TTC
[ENA]
¡û
>W1711146805
LVJE01000010
Bacteroidota
Flavobacterium fryxellicola [LVJE]
246347
246421
+
Glu
TTC
[ENA]
¡û
>W1711712522
MTCA01000044
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
13230
13156
-
Glu
TTC
[ENA]
¡û
>W1711744035
MUFX01000001
Bacteroidota
Flavobacterium sp. LM5 [MUFX]
1603763
1603837
+
Glu
TTC
[ENA]
¡û
>C171066015
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
1533109
1533183
+
Glu
TTC
-
¡û
>W131214048
ATTM01000005
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
319966
320038
+
Glu
TTC
[ENA]
¡û
>W131225365
AUDN01000005
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
87629
87557
-
Glu
TTC
[ENA]
¡û
>W131225409
AUDO01000001
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
21909
21835
-
Glu
TTC
[ENA]
¡û
>W141023487
AJXL01000237
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
387
313
-
Glu
TTC
[ENA]
¡û
>WENV180593902
OCOY01002573
[OCOY] marine metagenome; ENVO:00002010
1884
1812
-
Glu
TTC
[ENA]
¡û
>WENV181380388
OFRD01073256
[OFRD] wastewater metagenome; Exp Tend CN 100WW
266
194
-
Glu
TTC
[ENA]
¡û
>W141291931
JATV01000006
Bacteroidota
Flavobacterium succinicans LMG 10402 [JATV]
204173
204099
-
Glu
TTC
[ENA]
¡û
>WENV170559687
CXWL01137503
[CXWL] groundwater metagenome; biofilm material
1829
1755
-
Glu
TTC
[ENA]
¡û
>WENV170559829
CXWL01156312
[CXWL] groundwater metagenome; biofilm material
73
1
-
Glu
TTC
[ENA]
¡û
>C181047418
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
2238320
2238392
+
Glu
TTC
-
¡û
>W141820223
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
3609558
3609484
-
Glu
TTC
[ENA]
¡û
>W1910183305
BJNP01000023
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
219
291
+
Glu
TTC
[ENA]
¡û
>W1810072187
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
3426461
3426389
-
Glu
TTC
[ENA]
¡û
>W1810156513
PJBJ01000022
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
52627
52699
+
Glu
TTC
[ENA]
¡û
>W1810533232
QCZH01000002
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
103998
104070
+
Glu
TTC
[ENA]
¡û
>W1810722590
QNUX01000004
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
123203
123131
-
Glu
TTC
[ENA]
¡û
>W1810723041
QNVY01000003
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
178620
178548
-
Glu
TTC
[ENA]
¡û
>W1810763353
QQBA01000002
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
208811
208739
-
Glu
TTC
[ENA]
¡û
>W2010096920
BJNP01000023
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
219
291
+
Glu
TTC
[ENA]
¡û
>W2010437938
JAAAPM020000015
Bacteroidota
Flavobacterium sp. BBQ-18 [JAAAPM]
1578
1506
-
Glu
TTC
[ENA]
¡û
>W2010613130
JABSNK010000011
Bacteroidota
Flavobacterium sp. 28A [JABSNK]
10029
10101
+
Glu
TTC
[ENA]
¡û
>W2010613145
JABSNL010000002
Bacteroidota
Flavobacterium sp. 14A [JABSNL]
445122
445194
+
Glu
TTC
[ENA]
¡û
>W2010613269
JABSNN010000009
Bacteroidota
Flavobacterium sp. 7E [JABSNN]
158298
158226
-
Glu
TTC
[ENA]
¡û
>W2011262680
QKNZ01000038
Bacteroidota
Flavobacterium sp. SOK18b [QKNZ]
10603
10531
-
Glu
TTC
[ENA]
¡û
>W2011375179
RBKZ01000001
Bacteroidota
Flavobacterium sp. 120 [RBKZ]
1081736
1081808
+
Glu
TTC
[ENA]
¡û
>W2011388687
RBXA01000003
Bacteroidota
Flavobacterium limicola DSM 15094 [RBXA]
160208
160280
+
Glu
TTC
[ENA]
¡û
>W2011388866
RBXD01000001
Bacteroidota
Flavobacterium sp. 123 [RBXD]
275759
275687
-
Glu
TTC
[ENA]
¡û
>W2011412704
REFH01000007
Bacteroidota
Flavobacterium weaverense DSM 19727 [REFH]
638224
638296
+
Glu
TTC
[ENA]
¡û
>W2011504732
RYDF01000038
Bacteroidota
Flavobacterium sp. GSN2 [RYDF]
114
186
+
Glu
TTC
[ENA]
¡û
>W2011504770
RYDG01000005
Bacteroidota
Flavobacterium sp. LB2P53 [RYDG]
64147
64219
+
Glu
TTC
[ENA]
¡û
>W2011504805
RYDH01000003
Bacteroidota
Flavobacterium sp. LS1R10 [RYDH]
116882
116954
+
Glu
TTC
[ENA]
¡û
>W2011504838
RYDI01000004
Bacteroidota
Flavobacterium sp. LS1P28 [RYDI]
137395
137323
-
Glu
TTC
[ENA]
¡û
>W2011504887
RYDJ01000006
Bacteroidota
Flavobacterium sp. RB1N8 [RYDJ]
55357
55285
-
Glu
TTC
[ENA]
¡û
>W2011504932
RYDK01000005
Bacteroidota
Flavobacterium sp. ZB4P23 [RYDK]
163380
163308
-
Glu
TTC
[ENA]
¡û
>W2011504956
RYDL01000003
Bacteroidota
Flavobacterium sp. RSP15 [RYDL]
272863
272791
-
Glu
TTC
[ENA]
¡û
>W2011505020
RYDM01000007
Bacteroidota
Flavobacterium sp. RSP46 [RYDM]
132632
132704
+
Glu
TTC
[ENA]
¡û
>W2011505055
RYDN01000022
Bacteroidota
Flavobacterium sp. RSP49 [RYDN]
448
376
-
Glu
TTC
[ENA]
¡û
>W2011505083
RYDO01000003
Bacteroidota
Flavobacterium sp. GSP6 [RYDO]
51432
51504
+
Glu
TTC
[ENA]
¡û
>W2011505124
RYDP01000006
Bacteroidota
Flavobacterium sp. GSP27 [RYDP]
115751
115823
+
Glu
TTC
[ENA]
¡û
>W2011633269
SMFM01000002
Bacteroidota
Flavobacterium sp. AT-3-2 [SMFM]
735899
735827
-
Glu
TTC
[ENA]
¡û
>W2011633298
SMFN01000001
Bacteroidota
Flavobacterium sp. LB-D12 [SMFN]
166614
166542
-
Glu
TTC
[ENA]
¡û
>W2011633368
SMFO01000011
Bacteroidota
Flavobacterium sp. TSA-D2 [SMFO]
63181
63253
+
Glu
TTC
[ENA]
¡û
>W2011637063
SMLF01000008
Bacteroidota
Flavobacterium sp. GT3P67 [SMLF]
88773
88845
+
Glu
TTC
[ENA]
¡û
>W2011637094
SMLG01000006
Bacteroidota
Flavobacterium sp. LB3P52 [SMLG]
143962
144034
+
Glu
TTC
[ENA]
¡û
>W2011637123
SMLH01000002
Bacteroidota
Flavobacterium sp. LB2P22 [SMLH]
56027
56099
+
Glu
TTC
[ENA]
¡û
>W2012031819
VHLM01000073
Bacteroidota
Flavobacterium sp. I-STPP5a [VHLM]
10095
10167
+
Glu
TTC
[ENA]
¡û
>W2012031867
VHLN01000099
Bacteroidota
Flavobacterium sp. I-STPA6A [VHLN]
10102
10174
+
Glu
TTC
[ENA]
¡û
>W2012066223
VJZL01000004
Bacteroidota
Flavobacterium sp. GSR22 [VJZL]
46109
46181
+
Glu
TTC
[ENA]
¡û
>W2012066269
VJZM01000007
Bacteroidota
Flavobacterium sp. GSR18 [VJZM]
117022
116950
-
Glu
TTC
[ENA]
¡û
>W2012066305
VJZN01000006
Bacteroidota
Flavobacterium sp. GSP39 [VJZN]
117022
116950
-
Glu
TTC
[ENA]
¡û
>W2012066351
VJZO01000010
Bacteroidota
Flavobacterium sp. GSP21 [VJZO]
69289
69217
-
Glu
TTC
[ENA]
¡û
>W2012066392
VJZP01000010
Bacteroidota
Flavobacterium sp. GSP16 [VJZP]
69158
69086
-
Glu
TTC
[ENA]
¡û
>W2012066515
VJZS01000004
Bacteroidota
Flavobacterium sp. ZT3R18 [VJZS]
113894
113966
+
Glu
TTC
[ENA]
¡û
>W2012066556
VJZT01000003
Bacteroidota
Flavobacterium sp. LB1R34 [VJZT]
112569
112641
+
Glu
TTC
[ENA]
¡û
>W2012081634
VLKO01000008
Bacteroidota
Flavobacterium tiangeerense CGMCC 1.6847 [VLKO]
143634
143562
-
Glu
TTC
[ENA]
¡û
>W2012082061
VLKX01000002
Bacteroidota
Flavobacterium glaciei CGMCC 1.5380 [VLKX]
134215
134287
+
Glu
TTC
[ENA]
¡û
>W2012102769
VOGZ02000007
Bacteroidota
Flavobacterium sp. XN-5 [VOGZ]
152209
152137
-
Glu
TTC
[ENA]
¡û
>W2110071656
BPLU01000049
Bacteroidota
Flavobacterium sp. UMI-01 [BPLU]
8439
8511
+
Glu
TTC
[ENA]
¡û
>W2110210809
JACFTC010000002
Bacteroidota
Flavobacterium sp. GP15 [JACFTC]
308292
308364
+
Glu
TTC
[ENA]
¡û
>W2110248876
JACRUI010000004
Bacteroidota
Flavobacterium kayseriense F-47 [JACRUI]
334982
334910
-
Glu
TTC
[ENA]
¡û
>W2110248919
JACRUJ010000004
Bacteroidota
Flavobacterium kayseriense F-380 [JACRUJ]
334982
334910
-
Glu
TTC
[ENA]
¡û
>W2110248936
JACRUK010000002
Bacteroidota
Flavobacterium muglaense F-60 [JACRUK]
90569
90641
+
Glu
TTC
[ENA]
¡û
>W2110248981
JACRUL010000002
Bacteroidota
Flavobacterium muglaense F-392 [JACRUL]
120426
120354
-
Glu
TTC
[ENA]
¡û
>W2110363466
JADOVC010000008
Bacteroidota
Flavobacterium sp. CG_9.1 [JADOVC]
104011
103939
-
Glu
TTC
[ENA]
¡û
>W2110363528
JADOVD010000024
Bacteroidota
Flavobacterium sp. CG_9.10 [JADOVD]
10808
10736
-
Glu
TTC
[ENA]
¡û
>W2110409440
JAEHFV010000009
Bacteroidota
Flavobacterium agrisoli SE-1-e [JAEHFV]
827
755
-
Glu
TTC
[ENA]
¡û
>W2110532805
JAGFBU010000001
Bacteroidota
Flavobacterium sp. P4023 [JAGFBU]
157913
157841
-
Glu
TTC
[ENA]
¡û
>W2110541250
JAGGNA010000001
Bacteroidota
Flavobacterium sp. CG_23.5 [JAGGNA]
1084266
1084194
-
Glu
TTC
[ENA]
¡û
>C201225244
CP049329
Bacteroidota
Flavobacterium sp. Sr18 [CP049329]
3131124
3131196
+
Glu
TTC
-
¡û
>C211386001
CP081492
Bacteroidota
Flavobacterium sp. CHNK8 [CP081492]
2359019
2358947
-
Glu
TTC
-
¡û
>C231077223
CP056783
Bacteroidota
Flavobacterium sp. K5-23 [CP056783]
3233071
3232999
-
Glu
TTC
-
¡û
>C231235317
CP087135
Bacteroidota
Flavobacterium sp. F-340 [CP087135]
1729860
1729932
+
Glu
TTC
-
¡û
>W2110750783
MQTN01000012
Bacteroidota
Flavobacterium sp. PL002 PL0002 [MQTN]
9394
9466
+
Glu
TTC
[ENA]
¡û
>C231525273
CP110009
Bacteroidota
Flavobacterium sp. N3904 [CP110009]
2443948
2444020
+
Glu
TTC
-
¡û
>C231553949
CP113948
Bacteroidota
Flavobacterium sp. IMCC34515 [CP113948]
470644
470716
+
Glu
TTC
-
¡û
>C231558259
CP114284
Bacteroidota
Flavobacterium sp. IMCC34518 [CP114284]
456690
456618
-
Glu
TTC
-
¡û
>C231563080
CP114882
Bacteroidota
Flavobacterium sp. IMCC36792 [CP114882]
2094001
2094073
+
Glu
TTC
-
¡û
>C231652958
OU957226
Bacteroidota
Flavobacterium sp. CECT 9288 [OU957226, OU957227]
2198779
2198707
-
Glu
TTC
-
¡û
>W1511390930
JSYM01000002
Bacteroidota
Flavobacterium sp. AED [JSYM]
117182
117256
+
Glu
TTC
[ENA]
¡û
>W121034211
AHKF01000018
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
135817
135891
+
Glu
TTC
[ENA]
¡û
>W1610521458
JMTM01000035
Bacteroidota
Flavobacterium succinicans [JMTM]
298214
298142
-
Glu
TTC
[ENA]
¡û
>W1610950035
LVEP01000028
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
19475
19549
+
Glu
TTC
[ENA]
¡û
>W1610957702
LVJE01000010
Bacteroidota
Flavobacterium fryxellicola [LVJE]
246347
246421
+
Glu
TTC
[ENA]
¡û
>W1710517116
FNDB01000021
Bacteroidota
Flavobacterium omnivorum [FNDB]
747
673
-
Glu
TTC
[ENA]
¡û
>W1710528043
FNMV01000013
Bacteroidota
Flavobacterium degerlachei [FNMV]
139669
139743
+
Glu
TTC
[ENA]
¡û
>W1710533464
FNRD01000001
Bacteroidota
Flavobacterium gillisiae [FNRD]
789460
789534
+
Glu
TTC
[ENA]
¡û
>W1710539684
FNVP01000006
Bacteroidota
Flavobacterium urumqiense [FNVP]
65091
65017
-
Glu
TTC
[ENA]
¡û
>W1710548150
FODN01000002
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
180524
180598
+
Glu
TTC
[ENA]
¡û
>W1710551332
FOFZ01000004
Bacteroidota
Flavobacterium frigoris [FOFZ]
191560
191486
-
Glu
TTC
[ENA]
¡û
>W1710560765
FONQ01000008
Bacteroidota
Flavobacterium xueshanense [FONQ]
45996
45922
-
Glu
TTC
[ENA]
¡û
>W1710569850
FOUT01000003
Bacteroidota
Flavobacterium succinicans [FOUT]
57498
57572
+
Glu
TTC
[ENA]
¡û
>W1710585190
FQWE01000001
Bacteroidota
Flavobacterium segetis [FQWE]
215430
215356
-
Glu
TTC
[ENA]
¡û
>W1710585257
FQWF01000013
Bacteroidota
Flavobacterium micromati [FQWF]
41965
42039
+
Glu
TTC
[ENA]
¡û
>W1710591572
FRBU01000041
Bacteroidota
Flavobacterium xanthum [FRBU]
21284
21358
+
Glu
TTC
[ENA]
¡û
>W1710591954
FRCC01000005
Bacteroidota
Flavobacterium flevense [FRCC]
197920
197846
-
Glu
TTC
[ENA]
¡û
>W1710592419
FRCL01000004
Bacteroidota
Flavobacterium xinjiangense [FRCL]
224235
224161
-
Glu
TTC
[ENA]
¡û
>W1710593387
FRDK01000002
Bacteroidota
Flavobacterium fryxellicola [FRDK]
321880
321806
-
Glu
TTC
[ENA]
¡û
>W1710620406
JMTM01000035
Bacteroidota
Flavobacterium succinicans [JMTM]
298214
298142
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK