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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370416 (65 seq.)
>W1710863468
LMFD01000010
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
731732
731658
-
Lys
TTT
[ENA]
¡û
>W1710864120
LMFQ01000002
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
45022
45096
+
Lys
TTT
[ENA]
¡û
>W1710864465
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
728672
728598
-
Lys
TTT
[ENA]
¡û
>W1710866020
LMHD01000021
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
42279
42353
+
Lys
TTT
[ENA]
¡û
>W1711073901
LSJA01000317
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
54794
54868
+
Lys
TTT
[ENA]
¡û
>W1711074026
LSJD01000166
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
29801
29727
-
Lys
TTT
[ENA]
¡û
>W131226706
AUEO01000037
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
48981
48907
-
Lys
TTT
[ENA]
¡û
>W131111817
APMP01000017
Alphaproteobacteria
Caulobacter vibrioides OR37 [APMP]
47045
46971
-
Lys
TTT
[ENA]
¡û
>C005344
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
1756063
1756137
+
Lys
TTT
[Ensembl]
¡û
>w018512
AATH01000014
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
19714
19788
+
Lys
TTT
[ENA]
¡û
>WENV180023404
FTHV01036685
[FTHV] metagenome; soil
103
29
-
Lys
TTT
[ENA]
¡û
>WENV180023536
FTHY01022004
[FTHY] metagenome; soil
103
29
-
Lys
TTT
[ENA]
¡û
>WENV180026659
FTIU01013266
[FTIU] metagenome; soil
191
265
+
Lys
TTT
[ENA]
¡û
>WENV181227362
OFDN01008258
[OFDN] hot springs metagenome; Water
1480
1406
-
Lys
TTT
[ENA]
¡û
>WENV181227422
OFDN01009853
[OFDN] hot springs metagenome; Water
2004
1930
-
Lys
TTT
[ENA]
¡û
>C08002345
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
2385079
2385153
+
Lys
TTT
[Ensembl]
¡û
>WENV183730311
PJTR01018421
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
137
211
+
Lys
TTT
[ENA]
¡û
>WENV183731734
PJTT01000129
[PJTT] soil metagenome; Soil (2) enriched on wood chips
123141
123215
+
Lys
TTT
[ENA]
¡û
>WENV183743393
PJUJ01000820
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1367
1441
+
Lys
TTT
[ENA]
¡û
>WENV183743400
PJUJ01000889
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1399
1325
-
Lys
TTT
[ENA]
¡û
>WENV183744201
PJUK01001795
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
2074
2000
-
Lys
TTT
[ENA]
¡û
>WENV183744404
PJUK01017827
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
210
136
-
Lys
TTT
[ENA]
¡û
>WENV183745029
PJUL01001421
[PJUL] feces metagenome; Chicken feces enriched on filter paper
1367
1441
+
Lys
TTT
[ENA]
¡û
>WENV183745039
PJUL01001531
[PJUL] feces metagenome; Chicken feces enriched on filter paper
1399
1325
-
Lys
TTT
[ENA]
¡û
>WENV170707341
LNAP01018041
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3160
3234
+
Lys
TTT
[ENA]
¡û
>C181078831
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
1864724
1864798
+
Lys
TTT
-
¡û
>C181078882
CP023314
Alphaproteobacteria
Caulobacter vibrioides CB1 [CP023314]
1782230
1782304
+
Lys
TTT
-
¡û
>C181097372
CP024201
Alphaproteobacteria
Caulobacter mirabilis FWC 38 [CP024201]
2916088
2916014
-
Lys
TTT
-
¡û
>C181160490
CP027850
Alphaproteobacteria
Caulobacter segnis TK0059 [CP027850]
2864347
2864273
-
Lys
TTT
-
¡û
>C191119766
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
1779284
1779358
+
Lys
TTT
-
¡û
>W141779504
JONW01000009
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
139522
139448
-
Lys
TTT
[ENA]
¡û
>W141807514
JPOM01000001
Alphaproteobacteria
Caulobacteraceae bacterium PMMR1 [JPOM]
1838490
1838416
-
Lys
TTT
[ENA]
¡û
>W141815973
JQJN01000019
Alphaproteobacteria
Caulobacter henricii [JQJN]
26225
26299
+
Lys
TTT
[ENA]
¡û
>W141816064
JQJP01000018
Alphaproteobacteria
Caulobacter henricii [JQJP]
26834
26908
+
Lys
TTT
[ENA]
¡û
>C09103128
CP001340
Alphaproteobacteria
Caulobacter vibrioides NA1000 [CP001340]
1782039
1782113
+
Lys
TTT
[Ensembl]
¡û
>W1810073473
PEGF01000001
Alphaproteobacteria
Caulobacter sp. X [PEGF]
730853
730779
-
Lys
TTT
[ENA]
¡û
>W1810073547
PEGH01000010
Alphaproteobacteria
Caulobacter sp. BP25 [PEGH]
171040
171114
+
Lys
TTT
[ENA]
¡û
>W1810177651
PJRR01000018
Alphaproteobacteria
Caulobacter vibrioides DSM 9893 [PJRR]
12010
11936
-
Lys
TTT
[ENA]
¡û
>W1810177684
PJRS01000017
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
46772
46698
-
Lys
TTT
[ENA]
¡û
>W1810543647
QDKO01000020
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
244492
244566
+
Lys
TTT
[ENA]
¡û
>W1810543723
QDKP01000066
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
229661
229735
+
Lys
TTT
[ENA]
¡û
>W1810543728
QDKQ01000014
Alphaproteobacteria
Caulobacter endophyticus 774 [QDKQ]
46519
46445
-
Lys
TTT
[ENA]
¡û
>W1810594135
QFYS01000001
Alphaproteobacteria
Phenylobacterium kunshanense BUT-10 [QFYS]
108950
109024
+
Lys
TTT
[ENA]
¡û
>W1810625707
QHJY01000196
Alphaproteobacteria
Caulobacter sp. D5 [QHJY]
1209
1135
-
Lys
TTT
[ENA]
¡û
>W1810625765
QHJZ01000708
Alphaproteobacteria
Caulobacter sp. D4A [QHJZ]
10555
10629
+
Lys
TTT
[ENA]
¡û
>W2010493297
JAAKGT010000014
Alphaproteobacteria
Caulobacter sp. 602-2 [JAAKGT]
45554
45480
-
Lys
TTT
[ENA]
¡û
>W2011626145
SLZL01000006
Alphaproteobacteria
Caulobacter sp. BK020 [SLZL]
185231
185157
-
Lys
TTT
[ENA]
¡û
>W2011754108
SZWJ01000010
Alphaproteobacteria
Caulobacter sp. SSI4214 [SZWJ]
35148
35222
+
Lys
TTT
[ENA]
¡û
>W2012047500
VIVU01000011
Alphaproteobacteria
Caulobacter henricii 536 [VIVU]
197533
197459
-
Lys
TTT
[ENA]
¡û
>W2012048382
VIWK01000014
Alphaproteobacteria
Caulobacter rhizosphaerae 3260 [VIWK]
27659
27733
+
Lys
TTT
[ENA]
¡û
>W2110394146
JADWOX010000025
Alphaproteobacteria
Caulobacter hibisci KACC 18849 [JADWOX]
41619
41693
+
Lys
TTT
[ENA]
¡û
>C211318239
CP073078
Alphaproteobacteria
Caulobacter sp. S6 [CP073078]
260621
260695
+
Lys
TTT
-
¡û
>C211371980
CP079926
Alphaproteobacteria
Caulobacter vibrioides CB S2B lysogen [CP079926]
1756059
1756133
+
Lys
TTT
-
¡û
>W10109891
ADBN01000006
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
171511
171585
+
Lys
TTT
[ENA]
¡û
>C241131711
CP048815
Alphaproteobacteria
Caulobacter rhizosphaerae KCTC 52515 [CP048815]
2537797
2537871
+
Lys
TTT
-
¡û
>W2310010477
BMLD01000002
Alphaproteobacteria
Caulobacter rhizosphaerae CGMCC 1.15915 [BMLD]
40429
40503
+
Lys
TTT
[ENA]
¡û
>W11112328
ADBN01000006
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
171511
171585
+
Lys
TTT
[ENA]
¡û
>C121001863
CP002008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [CP002008]
2864473
2864399
-
Lys
TTT
[Ensembl]
¡û
>W1610725814
LMFD01000010
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
731732
731658
-
Lys
TTT
[ENA]
¡û
>W1610726466
LMFQ01000002
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
45022
45096
+
Lys
TTT
[ENA]
¡û
>W1610726811
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
728672
728598
-
Lys
TTT
[ENA]
¡û
>W1610728366
LMHD01000021
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
42279
42353
+
Lys
TTT
[ENA]
¡û
>W1610912280
LSID01000042
Actinomycetota
Dermacoccus sp. CCH12-B7 [LSID]
54794
54868
+
Lys
TTT
[ENA]
¡û
>W1610913206
LSJA01000317
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
54794
54868
+
Lys
TTT
[ENA]
¡û
>W1710565862
FORN01000051
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
32736
32810
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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