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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370416 (84 seq.)
>W1711081220
LSSA01000049
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
6104
6175
+
Lys
TTT
[ENA]
¡û
>W1711120935
LUHJ01000065
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
108162
108091
-
Lys
TTT
[ENA]
¡û
>W1711335745
MBRD01000003
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
52789
52718
-
Lys
TTT
[ENA]
¡û
>W1711335808
MBRE01000025
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
26727
26654
-
Lys
TTT
[ENA]
¡û
>W1711510360
MLAW01000002
Cyanobacteriota
Roseofilum reptotaenium AO1-A [MLAW]
27675
27604
-
Lys
TTT
[ENA]
¡û
>W1711666587
MRCC01000008
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
24305
24232
-
Lys
TTT
[ENA]
¡û
>W1711666699
MRCE01000027
Cyanobacteriota
Phormidium ambiguum IAM M-71 [MRCE]
5950
6021
+
Lys
TTT
[ENA]
¡û
>W1711666734
MRCF01000049
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
5661
5732
+
Lys
TTT
[ENA]
¡û
>W1711711298
MTAV01000013
Cyanobacteriota
Nostoc sp. T09 [MTAV]
19441
19512
+
Lys
TTT
[ENA]
¡û
>W1711711373
MTAW01000125
Cyanobacteriota
Nostoc sp. 106C [MTAW]
2694
2623
-
Lys
TTT
[ENA]
¡û
>C171097553
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
4566307
4566236
-
Lys
TTT
-
¡û
>W131036474
ALVR01000009
Cyanobacteriota
Spirulina subsalsa PCC 9445 [ALVR]
311544
311615
+
Lys
TTT
[ENA]
¡û
>W131036535
ALVW01000007
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
544515
544443
-
Lys
TTT
[ENA]
¡û
>W131058306
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
2337776
2337847
+
Lys
TTT
[ENA]
¡û
>W131065840
ANNX01000092
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
91878
91949
+
Lys
TTT
[ENA]
¡û
>W131110158
APIZ01000293
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
24631
24560
-
Lys
TTT
[ENA]
¡û
>C001213
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
5364031
5364102
+
Lys
TTT
[Ensembl]
¡û
>C015282
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
3305791
3305862
+
Lys
TTT
[Ensembl]
¡û
>WENV180111573
OAPN01111629
[OAPN] marine metagenome; 2011
374
303
-
Lys
TTT
[ENA]
¢þ
>w002256
AAAY02000012
Cyanobacteriota
Nostoc punctiforme [AAAY]
110202
110276
+
Lys
TTT
[ENA]
¡û
>W141038230
ALVK01000018
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
2098059
2098134
+
Lys
TTT
[ENA]
¡û
>WENV181414705
OGCL01001099
[OGCL] hot springs metagenome; Hot spring water
21252
21323
+
Lys
TTT
[ENA]
¢þ
>WENV181841051
OGVQ01000032
[OGVQ] freshwater metagenome; freshwater
5686
5613
-
Lys
TTT
[ENA]
¢þ
>WENV181843471
OGVU01018360
[OGVU] freshwater metagenome; freshwater
633
704
+
Lys
TTT
[ENA]
¢þ
>WENV181849136
OGVZ01057321
[OGVZ] freshwater metagenome; freshwater
121
50
-
Lys
TTT
[ENA]
¢þ
>C08000534
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
1493820
1493891
+
Lys
TTT
[Ensembl]
¡û
>WENV171003223
NNBT01002545
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
860
931
+
Lys
TTT
[ENA]
¢þ
>WENV171003465
NNBU01000032
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
185146
185075
-
Lys
TTT
[ENA]
¢þ
>WENV171003682
NNBV01000126
[NNBV] plant metagenome; symbiotic tissue sample KVS11
474
545
+
Lys
TTT
[ENA]
¢þ
>C181078449
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
957013
956942
-
Lys
TTT
-
¡û
>C181105227
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2859981
2860052
+
Lys
TTT
-
¡û
>C181137815
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
6928716
6928645
-
Lys
TTT
-
¡û
>C191000293
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
1456616
1456687
+
Lys
TTT
-
¡û
>C191001277
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
6264166
6264095
-
Lys
TTT
-
¡û
>C191083018
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
2083663
2083734
+
Lys
TTT
-
¡û
>W09101153
AAEA01000007
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
204324
204395
+
Lys
TTT
[ENA]
¡û
>W1910020500
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
4646932
4647003
+
Lys
TTT
[ENA]
¡û
>W1910175497
BJCE01000016
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
40613
40542
-
Lys
TTT
[ENA]
¡û
>W1910194238
CZCU01000136
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
357978
358049
+
Lys
TTT
[ENA]
¡û
>W1910194338
CZDF01000172
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
857862
857791
-
Lys
TTT
[ENA]
¡û
>W1910596170
LAGX01000002
Cyanobacteriota
Nostoc linckia z1 [LAGX]
231560
231631
+
Lys
TTT
[ENA]
¡û
>W1910596372
LAGZ01000030
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
80170
80241
+
Lys
TTT
[ENA]
¡û
>W1910596448
LAHA01000011
Cyanobacteriota
Nostoc linckia z4 [LAHA]
32182
32111
-
Lys
TTT
[ENA]
¡û
>W1910596499
LAHB01000005
Cyanobacteriota
Nostoc linckia z6 [LAHB]
186768
186839
+
Lys
TTT
[ENA]
¡û
>W1910596618
LAHC01000049
Cyanobacteriota
Nostoc linckia z7 [LAHC]
11865
11794
-
Lys
TTT
[ENA]
¡û
>W1910596718
LAHD01000049
Cyanobacteriota
Nostoc linckia z8 [LAHD]
10818
10747
-
Lys
TTT
[ENA]
¡û
>W1910596786
LAHE01000046
Cyanobacteriota
Nostoc linckia z9 [LAHE]
10199
10128
-
Lys
TTT
[ENA]
¡û
>W1910596840
LAHF01000019
Cyanobacteriota
Nostoc linckia z13 [LAHF]
46341
46412
+
Lys
TTT
[ENA]
¡û
>W1910596983
LAHG01000082
Cyanobacteriota
Nostoc linckia z14 [LAHG]
21435
21506
+
Lys
TTT
[ENA]
¡û
>W1910597075
LAHH01000395
Cyanobacteriota
Nostoc linckia z15 [LAHH]
2648
2719
+
Lys
TTT
[ENA]
¡û
>W1910597145
LAHI01000055
Cyanobacteriota
Nostoc linckia z16 [LAHI]
46183
46254
+
Lys
TTT
[ENA]
¡û
>W1910597197
LAHJ01000040
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
80097
80168
+
Lys
TTT
[ENA]
¡û
>W1910646641
LWSY01000002
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
5102
5031
-
Lys
TTT
[ENA]
¡û
>W1910792685
MRBZ01000084
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
2708
2637
-
Lys
TTT
[ENA]
¡û
>W1910812560
MVDI01000010
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
119108
119181
+
Lys
TTT
[ENA]
¡û
>W1911118731
NOLJ01000002
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
116735
116806
+
Lys
TTT
[ENA]
¡û
>W1911118853
NOLK01000188
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
1088
1159
+
Lys
TTT
[ENA]
¡û
>W1911244255
NSHF01000035
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
2854
2783
-
Lys
TTT
[ENA]
¡û
>W1911581795
PGEM01000186
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
13234
13161
-
Lys
TTT
[ENA]
¡û
>W1810076221
PEIG01000020
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
44187
44260
+
Lys
TTT
[ENA]
¡û
>W1810296702
PTJN01000039
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
38093
38166
+
Lys
TTT
[ENA]
¡û
>C11115565
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
2136144
2136073
-
Lys
TTT
[Ensembl]
¡û
>W1511013876
JHEG02000058
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
1631979
1632050
+
Lys
TTT
[ENA]
¡û
>W1511107994
JJML01000003
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
141920
141991
+
Lys
TTT
[ENA]
¡û
>W1511397119
JTCM01000043
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
594627
594556
-
Lys
TTT
[ENA]
¡û
>W1511501678
JXCA01000014
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
766091
766018
-
Lys
TTT
[ENA]
¡û
>W1511501716
JXCB01000007
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
746208
746279
+
Lys
TTT
[ENA]
¡û
>W11160142
AFEJ01000331
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
23661
23732
+
Lys
TTT
[ENA]
¡û
>C161002491
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
791581
791652
+
Lys
TTT
[Ensembl]
¡û
>C161038929
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
1427452
1427381
-
Lys
TTT
[Ensembl]
¡û
>W1610003582
AGCR01000127
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
24168
24239
+
Lys
TTT
[ENA]
¡û
>W1610084877
CDHJ01000181
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
52941
53012
+
Lys
TTT
[ENA]
¡û
>C131004291
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
3123596
3123523
-
Lys
TTT
[Ensembl]
¡û
>C131004204
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
291407
291336
-
Lys
TTT
[Ensembl]
¡û
>C131005092
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
1275397
1275326
-
Lys
TTT
[Ensembl]
¡û
>C131010309
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
6806773
6806844
+
Lys
TTT
[Ensembl]
¡û
>W1610656795
LJOR01000034
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
68394
68323
-
Lys
TTT
[ENA]
¡û
>W1610656898
LJOT01000335
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
2940
2869
-
Lys
TTT
[ENA]
¡û
>W1610932172
LUHJ01000065
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
108162
108091
-
Lys
TTT
[ENA]
¡û
>W1611066452
MBRD01000003
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
52789
52718
-
Lys
TTT
[ENA]
¡û
>W1611066515
MBRE01000025
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
26727
26654
-
Lys
TTT
[ENA]
¡û
>W1710004202
AGCR01000127
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
24168
24239
+
Lys
TTT
[ENA]
¡û
>W1710088023
BDUC01000003
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
636120
636191
+
Lys
TTT
[ENA]
¡û
>W1710089739
CDHJ01000181
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
52941
53012
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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