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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370515 (86 seq.)
>W1711221594
LXRG01000054
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
138684
138610
-
His
GTG
[ENA]
¡û
>W1711434589
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
714439
714513
+
His
GTG
[ENA]
¡û
>W131095840
AOPO01000002
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
540664
540738
+
His
GTG
[ENA]
¡û
>W141252201
CBRE010000113
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
23113
23039
-
His
GTG
[ENA]
¡û
>WENV182548728
OJBX01000042
[OJBX] seawater metagenome; Sea water
35486
35560
+
His
GTG
[ENA]
¡û
>WENV182568584
OJEV01010024
[OJEV] seawater metagenome; Sea water
104
30
-
His
GTG
[ENA]
¡û
>WENV182572675
OJFM01001222
[OJFM] seawater metagenome; Sea water
4170
4244
+
His
GTG
[ENA]
¡û
>WENV182576510
OJFX01043275
[OJFX] seawater metagenome; Sea water
126
52
-
His
GTG
[ENA]
¡û
>WENV182585298
OJHH01006744
[OJHH] seawater metagenome; Sea water
1050
976
-
His
GTG
[ENA]
¡û
>WENV182588622
OJHV01003428
[OJHV] seawater metagenome; Sea water
147
73
-
His
GTG
[ENA]
¡û
>WENV182591140
OJIL01000021
[OJIL] seawater metagenome; Sea water
154
80
-
His
GTG
[ENA]
¡û
>WENV182591408
OJIO01000024
[OJIO] seawater metagenome; Sea water
35486
35560
+
His
GTG
[ENA]
¡û
>WENV182593251
OJIT01013409
[OJIT] seawater metagenome; Sea water
398
324
-
His
GTG
[ENA]
¡û
>W141275874
JADJ01000001
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
237080
237006
-
His
GTG
[ENA]
¡û
>WENV170014257
AXCI01003332
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
11221
11295
+
His
GTG
[ENA]
¡û
>WENV170014291
AXCI01004520
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
3810
3884
+
His
GTG
[ENA]
¡û
>WENV170112410
CEGE01005781
[CEGE] microbial mat metagenome; grass silage
77
3
-
His
GTG
[ENA]
¡û
>WENV170112540
CEGF01002690
[CEGF] microbial mat metagenome; grass silage
2172
2098
-
His
GTG
[ENA]
¡û
>WENV170675586
LDZP01000078
[LDZP] terrestrial metagenome; oil reservoir sample I1
65928
65854
-
His
GTG
[ENA]
¡û
>WENV170692507
LGOV01010986
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
83047
82973
-
His
GTG
[ENA]
¡û
>WENV170695995
LGVE01194949
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1690
1764
+
His
GTG
[ENA]
¡û
>WENV170699922
LGVF01680600
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1530
1604
+
His
GTG
[ENA]
¡û
>C181019891
CP016490
Gammaproteobacteria
Halomonas sp. GFAJ-1 [CP016490]
2730779
2730853
+
His
GTG
-
¡û
>C191007772
AP019416
Gammaproteobacteria
Halomonas olivaria TYRC17 [AP019416]
2525798
2525724
-
His
GTG
-
¡û
>C191165485
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
4428829
4428755
-
His
GTG
-
¡û
>W141564638
JIAY01000002
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
723896
723970
+
His
GTG
[ENA]
¡û
>W141754443
JNVS01000014
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
109211
109137
-
His
GTG
[ENA]
¡û
>W141818886
JQLV01000001
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
1891890
1891964
+
His
GTG
[ENA]
¡û
>W1910006962
BBQX01000038
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
22847
22773
-
His
GTG
[ENA]
¡û
>W1911148552
NPEY01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
241419
241493
+
His
GTG
[ENA]
¡û
>W1810156506
PJBI01000054
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
236265
236191
-
His
GTG
[ENA]
¡û
>W1810157218
PJBT01000185
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
163777
163851
+
His
GTG
[ENA]
¡û
>W1810722033
QNTU01000001
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
139356
139282
-
His
GTG
[ENA]
¡û
>C151075884
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
2432820
2432746
-
His
GTG
[Ensembl]
¡û
>C151104175
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
2732106
2732032
-
His
GTG
-
¡û
>W2010075320
BBQX01000038
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
22847
22773
-
His
GTG
[ENA]
¡û
>W2010103595
BJXV01000002
Gammaproteobacteria
Halovibrio variabilis NBRC 102410 [BJXV]
189220
189294
+
His
GTG
[ENA]
¡û
>W2010311122
CABWMN010000028
Gammaproteobacteria
Halomonas sp. 98 [CABWMN]
502678
502752
+
His
GTG
[ENA]
¡û
>W2010311151
CABWMO010000007
Gammaproteobacteria
Halomonas sp. 153 [CABWMO]
173152
173226
+
His
GTG
[ENA]
¡û
>W2010640503
JABWCV010000002
Gammaproteobacteria
Halomonas sp. QX-1 [JABWCV]
37997
38071
+
His
GTG
[ENA]
¡û
>W2010643342
JABWTB010000002
Gammaproteobacteria
Halomonas titanicae TAT1 [JABWTB]
607529
607603
+
His
GTG
[ENA]
¡û
>W2010673385
JACCDE010000003
Gammaproteobacteria
Halomonas glaciei DD39 [JACCDE]
100044
99970
-
His
GTG
[ENA]
¡û
>W2010676019
JACCGK010000011
Gammaproteobacteria
Halomonas sp. QX-2 [JACCGK]
121928
121854
-
His
GTG
[ENA]
¡û
>W2011021483
NPEY01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
241419
241493
+
His
GTG
[ENA]
¡û
>W2011049078
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
2461082
2461008
-
His
GTG
[ENA]
¡û
>W2011657156
SOCZ01000012
Gammaproteobacteria
Halomonas alkaliantarctica CRSS [SOCZ]
112246
112172
-
His
GTG
[ENA]
¡û
>W2011978541
VCQL01000016
Gammaproteobacteria
Halomonas sp. ATBC28 [VCQL]
80938
81012
+
His
GTG
[ENA]
¡û
>W2012094245
VNFE01000004
Gammaproteobacteria
Halomonas titanicae SM1922 [VNFE]
389424
389498
+
His
GTG
[ENA]
¡û
>W2012352325
WJPH01000004
Gammaproteobacteria
Halomonas sp. MG34 [WJPH]
366132
366206
+
His
GTG
[ENA]
¡û
>W2110098328
CAJFDU010000026
Gammaproteobacteria
Halomonas sp. 113 [CAJFDU]
966068
966142
+
His
GTG
[ENA]
¡û
>W2110098447
CAJFDW010000025
Gammaproteobacteria
Halomonas sp. 59 [CAJFDW]
965998
966072
+
His
GTG
[ENA]
¡û
>W2110098557
CAJFDZ010000005
Gammaproteobacteria
Halomonas sp. 156 [CAJFDZ]
217811
217737
-
His
GTG
[ENA]
¡û
>W2110098739
CAJFEC010000030
Gammaproteobacteria
Halomonas sp. I3 [CAJFEC]
192239
192313
+
His
GTG
[ENA]
¡û
>W2110177019
JABFAT010000013
Gammaproteobacteria
Halomonas sp. KRD171 [JABFAT]
227006
226932
-
His
GTG
[ENA]
¡û
>W2110188337
JABUYY010000005
Gammaproteobacteria
Halomonas sp. FME64 [JABUYY]
183515
183441
-
His
GTG
[ENA]
¡û
>W2110220285
JACIVL010000016
Gammaproteobacteria
Halomonas neptunia DSM 15720 [JACIVL]
2426
2500
+
His
GTG
[ENA]
¡û
>W2110546354
JAGGRM010000002
Gammaproteobacteria
Halomonas sp. ISL-104 [JAGGRM]
204727
204653
-
His
GTG
[ENA]
¡û
>W2110546442
JAGGRN010000014
Gammaproteobacteria
Halomonas sp. ISL-106 [JAGGRN]
138684
138610
-
His
GTG
[ENA]
¡û
>W2110546496
JAGGRO010000015
Gammaproteobacteria
Halomonas sp. ISL-56 [JAGGRO]
128617
128691
+
His
GTG
[ENA]
¡û
>W2110546564
JAGGRP010000108
Gammaproteobacteria
Halomonas sp. ISL-60 [JAGGRP]
10329
10403
+
His
GTG
[ENA]
¡û
>W2110577290
JAGWDL010000004
Gammaproteobacteria
Halomonas boliviensis kknpp38 [JAGWDL]
268214
268288
+
His
GTG
[ENA]
¡û
>W2110640799
JAHRFY010000003
Gammaproteobacteria
Halomonadaceae bacterium MT13 [JAHRFY]
116798
116724
-
His
GTG
[ENA]
¡û
>W2110640865
JAHRFZ010000008
Gammaproteobacteria
Halomonadaceae bacterium MT32 [JAHRFZ]
154686
154612
-
His
GTG
[ENA]
¡û
>C201000633
AP019514
Gammaproteobacteria
Halomonas sulfidaeris ATCC BAA-803 [AP019514]
2004565
2004639
+
His
GTG
-
¡û
>C201087758
CP040451
Gammaproteobacteria
Halomonas sp. PA16-9 [CP040451]
2536744
2536818
+
His
GTG
-
¡û
>C211119371
CP059082
Gammaproteobacteria
Halomonas titanicae SOB56 [CP059082]
3698445
3698371
-
His
GTG
-
¡û
>C211361198
CP077941
Gammaproteobacteria
Halomonadaceae bacterium MT13 [CP077941]
1651376
1651450
+
His
GTG
-
¡û
>C231136196
CP074200
Gammaproteobacteria
Halomonas sp. FeN2 [CP074200]
221477
221403
-
His
GTG
-
¡û
>C231226789
CP086344
Gammaproteobacteria
Halomonas profundus 13 [CP086344]
2479535
2479609
+
His
GTG
-
¡û
>W2110766681
RRZD01000008
Gammaproteobacteria
Halomonas sp. FME1 [RRZD]
34699
34773
+
His
GTG
[ENA]
¡û
>C231534345
CP110535
Gammaproteobacteria
Halomonas sp. BDJS001 [CP110535]
2335228
2335302
+
His
GTG
-
¡û
>C231636243
CP121119
Gammaproteobacteria
Halomonas sp. M1 [CP121119]
517700
517626
-
His
GTG
-
¡û
>W2110776086
VOGA01000007
Gammaproteobacteria
Halomonas sp. SBBP1 [VOGA]
113758
113832
+
His
GTG
[ENA]
¡û
>C231649486
CP122961
Gammaproteobacteria
Halomonas alkaliantarctica MSP3 [CP122961]
2013275
2013349
+
His
GTG
-
¡û
>W2130009102
CAJSTI010002333
Gammaproteobacteria
Halomonas elongata [CAJSTI]
1
75
+
His
GTG
[ENA]
¡û
>C241167487
CP054580
Gammaproteobacteria
Vreelandella titanicae GPM3 [CP054580]
1332632
1332706
+
His
GTG
-
¡û
>C241295115
CP130610
Gammaproteobacteria
Halomonas sp. HAL1 [CP130610]
1998041
1998115
+
His
GTG
-
¡û
>W1511479197
JWHY01000004
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
435235
435309
+
His
GTG
[ENA]
¡û
>W11180596
AGIB01000045
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
141447
141373
-
His
GTG
[ENA]
¡û
>W121023749
AHBC01000002
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
152702
152776
+
His
GTG
[ENA]
¡û
>W121016479
AGQZ01000065
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
49446
49520
+
His
GTG
[ENA]
¡û
>W1610612218
LGEN01000005
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
65928
65854
-
His
GTG
[ENA]
¡û
>W1611006063
LXRG01000054
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
138684
138610
-
His
GTG
[ENA]
¡û
>W1710518732
FNEF01000007
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
167959
168033
+
His
GTG
[ENA]
¡û
>W1710628368
JPUA01000037
Gammaproteobacteria
Halomonas campaniensis [JPUA]
133644
133570
-
His
GTG
[ENA]
¡û
>W1710733724
LGEN01000005
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
65928
65854
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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