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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370582 (93 seq.)
>W131001153
AGWL01000005
Actinomycetota
Actinobaculum massiliense ACS-171-V-Col2 [AGWL]
298221
298295
+
Arg
CCT
[ENA]
¡û
>W131001206
AGWM01000012
Actinomycetota
Actinotignum schaalii FB123-CNA-2 [AGWM]
370606
370534
-
Arg
CCT
[ENA]
¡û
>W1711169818
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
929568
929642
+
Arg
CCT
[ENA]
¡û
>W131215354
ATUY01000002
Actinomycetota
Actinotignum urinale DSM 15805 [ATUY]
106307
106381
+
Arg
CCT
[ENA]
¡û
>W131222597
AUBK01000003
Actinomycetota
Actinotignum schaalii DSM 15541 [AUBK]
314861
314789
-
Arg
CCT
[ENA]
¡û
>W1711312377
MASX01000049
Actinomycetota
Actinobaculum suis [MASX]
59701
59775
+
Arg
CCT
[ENA]
¡û
>W1711312422
MASY01000056
Actinomycetota
Actinobaculum suis [MASY]
59803
59875
+
Arg
CCT
[ENA]
¡û
>WENV180697660
ODDE01002295
[ODDE] human metagenome; G_DNA_Supragingival plaque
1057
984
-
Arg
CCT
[ENA]
¡û
>WENV180727178
ODGU01002849
[ODGU] human metagenome; G_DNA_Supragingival plaque
1060
987
-
Arg
CCT
[ENA]
¡û
>WENV180732728
ODGY01003048
[ODGY] human metagenome; G_DNA_Supragingival plaque
4164
4237
+
Arg
CCT
[ENA]
¡û
>WENV180734000
ODGZ01001859
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1948
1875
-
Arg
CCT
[ENA]
¡û
>WENV180735715
ODHB01000362
[ODHB] human metagenome; G_DNA_Supragingival plaque
16595
16668
+
Arg
CCT
[ENA]
¡û
>WENV180749863
ODHS01000055
[ODHS] human metagenome; G_DNA_Supragingival plaque
65384
65456
+
Arg
CCT
[ENA]
¡û
>WENV180777218
ODIL01000452
[ODIL] human metagenome; G_DNA_Supragingival plaque
2486
2413
-
Arg
CCT
[ENA]
¡û
>WENV180778133
ODIM01000761
[ODIM] human metagenome; G_DNA_Supragingival plaque
2398
2325
-
Arg
CCT
[ENA]
¡û
>WENV180781857
ODIP01006223
[ODIP] human metagenome; G_DNA_Supragingival plaque
2775
2848
+
Arg
CCT
[ENA]
¡û
>WENV180787716
ODIS01012585
[ODIS] human metagenome; G_DNA_Supragingival plaque
383
456
+
Arg
CCT
[ENA]
¡û
>WENV180795972
ODJB01000811
[ODJB] human metagenome; G_DNA_Supragingival plaque
16471
16544
+
Arg
CCT
[ENA]
¡û
>WENV180804257
ODJG01001359
[ODJG] human metagenome; G_DNA_Supragingival plaque
9080
9153
+
Arg
CCT
[ENA]
¡û
>WENV180813328
ODJO01000361
[ODJO] human metagenome; G_DNA_Supragingival plaque
27569
27642
+
Arg
CCT
[ENA]
¡û
>WENV180823602
ODJW01070771
[ODJW] human metagenome; G_DNA_Supragingival plaque
305
378
+
Arg
CCT
[ENA]
¡û
>WENV180833358
ODKC01035733
[ODKC] human metagenome; G_DNA_Supragingival plaque
107
180
+
Arg
CCT
[ENA]
¡û
>WENV180833859
ODKD01000505
[ODKD] human metagenome; G_DNA_Supragingival plaque
13110
13183
+
Arg
CCT
[ENA]
¡û
>WENV180836000
ODKE01027508
[ODKE] human metagenome; G_DNA_Supragingival plaque
325
398
+
Arg
CCT
[ENA]
¡û
>WENV180843421
ODKN01002886
[ODKN] human metagenome; G_DNA_Supragingival plaque
4520
4593
+
Arg
CCT
[ENA]
¡û
>WENV180846244
ODKT01007633
[ODKT] human metagenome; G_DNA_Supragingival plaque
786
713
-
Arg
CCT
[ENA]
¡û
>WENV180860390
ODLD01061015
[ODLD] human metagenome; G_DNA_Supragingival plaque
131
58
-
Arg
CCT
[ENA]
¡û
>WENV180868501
ODLL01010967
[ODLL] human metagenome; G_DNA_Buccal mucosa
86
13
-
Arg
CCT
[ENA]
¡û
>WENV180888581
ODMN01001790
[ODMN] human metagenome; G_DNA_Supragingival plaque
9135
9208
+
Arg
CCT
[ENA]
¡û
>WENV180927298
ODTM01000170
[ODTM] human metagenome; G_DNA_Supragingival plaque
27833
27906
+
Arg
CCT
[ENA]
¡û
>WENV180933285
ODTR01000010
[ODTR] human metagenome; G_DNA_Supragingival plaque
114931
115003
+
Arg
CCT
[ENA]
¡û
>WENV180934542
ODTS01000306
[ODTS] human metagenome; G_DNA_Subgingival plaque
1333
1405
+
Arg
CCT
[ENA]
¡û
>WENV180938715
ODTX01005518
[ODTX] human metagenome; G_DNA_Supragingival plaque
1056
983
-
Arg
CCT
[ENA]
¡û
>WENV180944296
ODUC01012671
[ODUC] human metagenome; G_DNA_Supragingival plaque
180
107
-
Arg
CCT
[ENA]
¡û
>WENV180958911
ODUL01125124
[ODUL] human metagenome; G_DNA_Supragingival plaque
130
57
-
Arg
CCT
[ENA]
¡û
>WENV180964404
ODUO01002069
[ODUO] human metagenome; G_DNA_Supragingival plaque
4524
4597
+
Arg
CCT
[ENA]
¡û
>WENV180973144
ODUW01001487
[ODUW] human metagenome; G_DNA_Supragingival plaque
2389
2316
-
Arg
CCT
[ENA]
¡û
>WENV180973243
ODUW01002432
[ODUW] human metagenome; G_DNA_Supragingival plaque
75
3
-
Arg
CCT
[ENA]
¡û
>WENV180976057
ODUY01041557
[ODUY] human metagenome; G_DNA_Supragingival plaque
381
308
-
Arg
CCT
[ENA]
¡û
>WENV180984263
ODVF01226439
[ODVF] human metagenome; G_DNA_Supragingival plaque
108
35
-
Arg
CCT
[ENA]
¡û
>WENV180986505
ODVK01000041
[ODVK] human metagenome; G_DNA_Supragingival plaque
27803
27876
+
Arg
CCT
[ENA]
¡û
>WENV180998538
ODVT01000708
[ODVT] human metagenome; G_DNA_Buccal mucosa
2409
2336
-
Arg
CCT
[ENA]
¡û
>WENV181002416
ODVX01000334
[ODVX] human metagenome; G_DNA_Supragingival plaque
6270
6197
-
Arg
CCT
[ENA]
¡û
>WENV181007668
ODWE01000433
[ODWE] human metagenome; G_DNA_Supragingival plaque
9011
8938
-
Arg
CCT
[ENA]
¡û
>WENV181019269
ODWU01001471
[ODWU] human metagenome; G_DNA_Supragingival plaque
9076
9149
+
Arg
CCT
[ENA]
¡û
>WENV181050557
ODYD01026049
[ODYD] human metagenome; G_DNA_Supragingival plaque
1067
994
-
Arg
CCT
[ENA]
¡û
>WENV181063358
ODYP01000486
[ODYP] human metagenome; G_DNA_Supragingival plaque
15568
15641
+
Arg
CCT
[ENA]
¡û
>WENV181070489
OEAE01002247
[OEAE] human metagenome; G_DNA_Supragingival plaque
2412
2339
-
Arg
CCT
[ENA]
¡û
>WENV181076157
OEAP01002106
[OEAP] human metagenome; G_DNA_Supragingival plaque
8942
9015
+
Arg
CCT
[ENA]
¡û
>WENV181082813
OEAV01000675
[OEAV] human metagenome; G_DNA_Supragingival plaque
16687
16760
+
Arg
CCT
[ENA]
¡û
>WENV181090370
OEBC01000309
[OEBC] human metagenome; G_DNA_Supragingival plaque
8972
8899
-
Arg
CCT
[ENA]
¡û
>WENV181107490
OEEI01008995
[OEEI] human metagenome; G_DNA_Supragingival plaque
2548
2621
+
Arg
CCT
[ENA]
¡û
>WENV181143703
OEHM01005389
[OEHM] human metagenome; G_DNA_Supragingival plaque
126
53
-
Arg
CCT
[ENA]
¡û
>WENV181145905
OEHQ01000208
[OEHQ] human metagenome; G_DNA_Supragingival plaque
8993
8920
-
Arg
CCT
[ENA]
¡û
>WENV181156049
OEIE01002318
[OEIE] human metagenome; G_DNA_Supragingival plaque
4013
4086
+
Arg
CCT
[ENA]
¡û
>WENV181160414
OEIK01008032
[OEIK] human metagenome; G_DNA_Supragingival plaque
2870
2943
+
Arg
CCT
[ENA]
¡û
>WENV181180121
OEJT01085396
[OEJT] human metagenome; G_DNA_Supragingival plaque
284
357
+
Arg
CCT
[ENA]
¡û
>WENV181180562
OEJU01000225
[OEJU] human metagenome; G_DNA_Supragingival plaque
28703
28776
+
Arg
CCT
[ENA]
¡û
>WENV181182419
OEJV01009195
[OEJV] human metagenome; G_DNA_Supragingival plaque
129
56
-
Arg
CCT
[ENA]
¡û
>W141143131
AWSB01000058
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
19706
19780
+
Arg
CCT
[ENA]
¡û
>WENV182636603
OJKZ01031370
[OJKZ] metagenome; surface
405
477
+
Arg
CCT
[ENA]
¡û
>WENV183508558
OMHE01000996
[OMHE] human oral metagenome; human oral
682
754
+
Arg
CCT
[ENA]
¡û
>WENV183511582
OMJG01000846
[OMJG] food metagenome; Cotija cheese
5314
5242
-
Arg
CCT
[ENA]
¡û
>C181172284
CP029033
Actinomycetota
Actinobaculum sp. 313 [CP029033]
391134
391206
+
Arg
CCT
-
¡û
>C191178124
CP040503
Actinomycetota
Actinomyces sp. oral taxon 848 str. F0332 [CP040503]
1769117
1769189
+
Arg
CCT
-
¡û
>W09134714
ACUY01000014
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
4380
4454
+
Arg
CCT
[ENA]
¡û
>W1910340088
FTLO01000018
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
4879
4951
+
Arg
CCT
[ENA]
¡û
>W1911597393
PNHX01000002
Actinomycetota
Actinotignum urinale UMB0759 [PNHX]
155362
155290
-
Arg
CCT
[ENA]
¡û
>W1911653693
QDIE01000014
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
24173
24245
+
Arg
CCT
[ENA]
¡û
>W1810192520
PKMD01000003
Actinomycetota
Actinotignum timonense UMB0063 [PKMD]
77070
76998
-
Arg
CCT
[ENA]
¡û
>W1810192570
PKME01000004
Actinomycetota
Actinotignum timonense UMB0086 [PKME]
52187
52259
+
Arg
CCT
[ENA]
¡û
>W1810580300
QETB01000001
Actinomycetota
Ancrocorticia populi sk1b4 [QETB]
425194
425266
+
Arg
CCT
[ENA]
¡û
>C151037578
CP008802
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP008802]
1112001
1111929
-
Arg
CCT
[Ensembl]
¡û
>W2010396718
FTLO01000018
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
4879
4951
+
Arg
CCT
[ENA]
¡û
>W2011206290
PNHX01000002
Actinomycetota
Actinotignum urinale UMB0759 [PNHX]
155362
155290
-
Arg
CCT
[ENA]
¡û
>W2011237252
QDIE01000014
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
24173
24245
+
Arg
CCT
[ENA]
¡û
>W2011479835
RQSN01000005
Actinomycetota
Actinobaculum sp. 352 [RQSN]
179557
179629
+
Arg
CCT
[ENA]
¡û
>W2011954806
UYIO01000001
Actinomycetota
Bacillus pumilus NCTC10327 [UYIO]
545694
545766
+
Arg
CCT
[ENA]
¡û
>W2110185617
JABUJW010000003
Actinomycetota
Actinomycetaceae bacterium zg1095 [JABUJW]
374185
374111
-
Arg
CCT
[ENA]
¡û
>W2110185660
JABUJX010000003
Actinomycetota
Actinomycetaceae bacterium zg1166 [JABUJX]
36728
36802
+
Arg
CCT
[ENA]
¡û
>W2110204818
JACEXJ010000009
Actinomycetota
Arcanobacterium sp. JY-X174 [JACEXJ]
53859
53931
+
Arg
CCT
[ENA]
¡û
>C201303033
CP059492
Actinomycetota
Arcanobacterium sp. JY-X040 [CP059492]
325144
325216
+
Arg
CCT
-
¡û
>C211196224
CP064953
Actinomycetota
Actinomycetaceae bacterium zg-1166 [CP064953]
1854209
1854135
-
Arg
CCT
-
¡û
>C241274035
CP126967
Actinomycetota
Actinotignum urinale UMB0759 [CP126967]
974190
974262
+
Arg
CCT
-
¡û
>C241331231
CP136960
Actinomycetota
Actinotignum timonense UMB0063 [CP136960]
30808
30736
-
Arg
CCT
-
¡û
>C241356710
CP140666
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP140666]
1743477
1743405
-
Arg
CCT
-
¡û
>W1511687550
LFUS01000014
Actinomycetota
Actinobaculum suis U311 [LFUS]
58091
58163
+
Arg
CCT
[ENA]
¡û
>W1610095237
CYUL01000004
Actinomycetota
Actinobaculum massiliense [CYUL]
725363
725289
-
Arg
CCT
[ENA]
¡û
>W1610979015
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
929568
929642
+
Arg
CCT
[ENA]
¡û
>W1611057430
MASX01000049
Actinomycetota
Actinobaculum suis [MASX]
59701
59775
+
Arg
CCT
[ENA]
¡û
>W1611057475
MASY01000056
Actinomycetota
Actinobaculum suis [MASY]
59803
59875
+
Arg
CCT
[ENA]
¡û
>W1710098032
CYUL01000004
Actinomycetota
Actinobaculum massiliense [CYUL]
725363
725289
-
Arg
CCT
[ENA]
¡û
>W1710514240
FNAU01000004
Actinomycetota
Actinobaculum suis [FNAU]
58335
58409
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK