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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370641 (75 seq.)
>W1710866855
LMHV01000001
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
242606
242680
+
Gly
GCC
[ENA]
¡û
>W131174568
ARIO01000024
Alphaproteobacteria
Rhizobium sp. 2MFCol3.1 [ARIO]
67451
67377
-
Gly
GCC
[ENA]
¡û
>W1711501106
MKRF01000115
Alphaproteobacteria
Rhizobium sp. 63-7 [MKRF]
2648
2574
-
Gly
GCC
[ENA]
¡û
>WENV016078
AACY020454792
Marine microbial communities from Global Ocean Sampling (GOS)
1868
1942
+
Gly
GCC
[ENA]
>WENV180104084
OAPB01075587
[OAPB] marine metagenome; Sterile flask
173
247
+
Gly
GCC
[ENA]
¢þ
>WENV180113317
OAPQ01028937
[OAPQ] marine metagenome; ENVO: 00002149
199
273
+
Gly
GCC
[ENA]
¢þ
>WENV180114924
OAPS01074297
[OAPS] marine metagenome; sea water
450
524
+
Gly
GCC
[ENA]
¢þ
>WENV180361274
OBNV01005545
[OBNV] marine metagenome; ENVO:00002042
77
3
-
Gly
GCC
[ENA]
¢þ
>WENV180366932
OBOE01000246
[OBOE] marine metagenome; ENVO:00002010
3401
3475
+
Gly
GCC
[ENA]
¢þ
>WENV180379984
OBOP01249708
[OBOP] marine metagenome; water
137
211
+
Gly
GCC
[ENA]
¢þ
>WENV180587039
OCON01024020
[OCON] marine metagenome; seawater
571
497
-
Gly
GCC
[ENA]
¢þ
>WENV180587327
OCON01182483
[OCON] marine metagenome; seawater
76
2
-
Gly
GCC
[ENA]
¢þ
>WENV180593137
OCOX01001851
[OCOX] marine metagenome; ENVO:00002010
1424
1498
+
Gly
GCC
[ENA]
¢þ
>WENV180594815
OCPA01014656
[OCPA] marine metagenome; ENVO:00002010
254
180
-
Gly
GCC
[ENA]
¢þ
>WENV180636350
OCRF01001611
[OCRF] marine metagenome; niskin bottle
415
341
-
Gly
GCC
[ENA]
¢þ
>WENV180638951
OCRI01060659
[OCRI] marine metagenome; Sterile flask
292
218
-
Gly
GCC
[ENA]
¢þ
>WENV180641443
OCRN01003415
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
982
1056
+
Gly
GCC
[ENA]
¢þ
>WENV017747
AACY020491254
Marine microbial communities from Global Ocean Sampling (GOS)
563
489
-
Gly
GCC
[ENA]
>WENV018088
AACY020499498
Marine microbial communities from Global Ocean Sampling (GOS)
3099
3175
+
Gly
GCC
[ENA]
>WENV182545600
OJBN01008711
[OJBN] seawater metagenome; Sea water
152
78
-
Gly
GCC
[ENA]
¢þ
>WENV183699471
OZSS01027882
[OZSS] metagenome; Seawater sample
1742
1813
+
Gly
GCC
[ENA]
¢þ
>WENV183700038
OZSS01087653
[OZSS] metagenome; Seawater sample
812
883
+
Gly
GCC
[ENA]
¢þ
>WENV183700308
OZSS01170898
[OZSS] metagenome; Seawater sample
416
342
-
Gly
GCC
[ENA]
¢þ
>WENV170125907
CENP01075803
[CENP] marine metagenome genome assembly TARA_030_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13900
13974
+
Gly
GCC
[ENA]
¢þ
>WENV170314157
CESN01096452
[CESN] marine metagenome genome assembly TARA_098_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
865
939
+
Gly
GCC
[ENA]
¢þ
>WENV170410863
CEUJ01141685
[CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
239
313
+
Gly
GCC
[ENA]
¢þ
>WENV170608664
FUWD011046599
[FUWD] metagenome; unknown
11
85
+
Gly
GCC
[ENA]
¢þ
>WENV170611458
FUWD012322294
[FUWD] metagenome; unknown
7
81
+
Gly
GCC
[ENA]
¢þ
>WENV170708380
LNAP01075442
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
966
892
-
Gly
GCC
[ENA]
¢þ
>WENV170834431
MDSZ01097041
[MDSZ] marine metagenome; seawater
20
94
+
Gly
GCC
[ENA]
¢þ
>WENV170839791
MDSZ01192464
[MDSZ] marine metagenome; seawater
15
89
+
Gly
GCC
[ENA]
¢þ
>WENV170840873
MDSZ01212768
[MDSZ] marine metagenome; seawater
6508
6582
+
Gly
GCC
[ENA]
¢þ
>WENV170841892
MDSZ01230586
[MDSZ] marine metagenome; seawater
1322
1396
+
Gly
GCC
[ENA]
¢þ
>WENV170883744
MDTC01171346
[MDTC] marine metagenome; seawater
903
977
+
Gly
GCC
[ENA]
¢þ
>WENV170917849
MDTE01198559
[MDTE] marine metagenome; seawater
4503
4429
-
Gly
GCC
[ENA]
¢þ
>WENV170948168
MEHZ011101123
[MEHZ] marine metagenome; marine surface water
835
909
+
Gly
GCC
[ENA]
¢þ
>C191072659
CP030827
Alphaproteobacteria
Neorhizobium sp. NCHU2750 [CP030827]
3654423
3654497
+
Gly
GCC
-
¡û
>C191152064
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
1187904
1187978
+
Gly
GCC
-
¡û
>WENV023574
AACY020737808
Marine microbial communities from Global Ocean Sampling (GOS)
530
604
+
Gly
GCC
[ENA]
>WENV002375
AACY020066405
Marine microbial communities from Global Ocean Sampling (GOS)
1781
1707
-
Gly
GCC
[ENA]
>SRA1002607
SRR001663.134883
Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
110
36
-
Gly
GCC
[SRA]
>SRA1002683
SRR001663.367705
Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
12
86
+
Gly
GCC
[SRA]
>W1810694706
QLMF01000006
Alphaproteobacteria
Rhizobium etli R22G [QLMF]
106277
106351
+
Gly
GCC
[ENA]
¡û
>WENV027965
AACY021085386
Marine microbial communities from Global Ocean Sampling (GOS)
678
752
+
Gly
GCC
[ENA]
>C151005226
CP004021
Alphaproteobacteria
Candidatus Liberibacter africanus PTSAPSY [CP004021]
706956
706882
-
Gly
GCC
[Ensembl]
¡û
>WENV028736
AACY021141701
Marine microbial communities from Global Ocean Sampling (GOS)
401
327
-
Gly
GCC
[ENA]
>WENV028958
AACY021159300
Marine microbial communities from Global Ocean Sampling (GOS)
913
839
-
Gly
GCC
[ENA]
>C151101698
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
3739743
3739817
+
Gly
GCC
[Ensembl]
¡û
>WENV030088
AACY021254696
Marine microbial communities from Global Ocean Sampling (GOS)
660
734
+
Gly
GCC
[ENA]
>W1510053014
CCRJ01000008
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
94873
94799
-
Gly
GCC
[ENA]
¡û
>W1510053068
CCRK01000013
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRK]
68899
68825
-
Gly
GCC
[ENA]
¡û
>W1510053101
CCRL01000009
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRL]
197472
197398
-
Gly
GCC
[ENA]
¡û
>WENV037201
AACY021839590
Marine microbial communities from Global Ocean Sampling (GOS)
420
346
-
Gly
GCC
[ENA]
>C10110235
CP001751
Alphaproteobacteria
Candidatus Puniceispirillum marinum IMCC1322 [CP001751]
1924174
1924100
-
Gly
GCC
[Ensembl]
¡û
>WENV038016
AACY021901515
Marine microbial communities from Global Ocean Sampling (GOS)
204
278
+
Gly
GCC
[ENA]
>WENV038461
AACY021935407
Marine microbial communities from Global Ocean Sampling (GOS)
757
833
+
Gly
GCC
[ENA]
>W1511433635
JUHJ01000005
Alphaproteobacteria
Rhizobium sp. YR528 [JUHJ]
247340
247414
+
Gly
GCC
[ENA]
¡û
>WENV044559
AACY022432623
Marine microbial communities from Global Ocean Sampling (GOS)
689
763
+
Gly
GCC
[ENA]
>WENV044561
AACY022432732
Marine microbial communities from Global Ocean Sampling (GOS)
204
130
-
Gly
GCC
[ENA]
>WENV048638
AACY022743747
Marine microbial communities from Global Ocean Sampling (GOS)
686
760
+
Gly
GCC
[ENA]
>WENV049731
AACY022818277
Marine microbial communities from Global Ocean Sampling (GOS)
469
395
-
Gly
GCC
[ENA]
>WENV050386
AACY022867101
Marine microbial communities from Global Ocean Sampling (GOS)
479
405
-
Gly
GCC
[ENA]
>WENV051169
AACY022936862
Marine microbial communities from Global Ocean Sampling (GOS)
80
154
+
Gly
GCC
[ENA]
>WENV055626
AACY023233711
Marine microbial communities from Global Ocean Sampling (GOS)
1078
1004
-
Gly
GCC
[ENA]
>WENV056493
AACY023258269
Marine microbial communities from Global Ocean Sampling (GOS)
562
636
+
Gly
GCC
[ENA]
>WENV056577
AACY023259955
Marine microbial communities from Global Ocean Sampling (GOS)
1210
1136
-
Gly
GCC
[ENA]
>WENV060466
AACY023400033
Marine microbial communities from Global Ocean Sampling (GOS)
529
455
-
Gly
GCC
[ENA]
>WENV062202
AACY023452357
Marine microbial communities from Global Ocean Sampling (GOS)
783
709
-
Gly
GCC
[ENA]
>WENV065964
AACY023622642
Marine microbial communities from Global Ocean Sampling (GOS)
144
218
+
Gly
GCC
[ENA]
>WENV073195
AACY023916632
Marine microbial communities from Global Ocean Sampling (GOS)
655
729
+
Gly
GCC
[ENA]
>WENV073753
AACY023936531
Marine microbial communities from Global Ocean Sampling (GOS)
600
526
-
Gly
GCC
[ENA]
>W1610729201
LMHV01000001
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
242606
242680
+
Gly
GCC
[ENA]
¡û
>WENV008780
AACY020236034
Marine microbial communities from Global Ocean Sampling (GOS)
329
255
-
Gly
GCC
[ENA]
>W1710551571
FOGE01000004
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
92241
92167
-
Gly
GCC
[ENA]
¡û
>W1710551572
FOGE01000004
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
92114
92040
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK