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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370641 (71 seq.)
>W1711081349
LSSO01000173
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
483
557
+
Cys
GCA
[ENA]
¡û
>W1711326432
MBFH01000007
Bacillota
Brevibacillus laterosporus [MBFH]
243950
243876
-
Cys
GCA
[ENA]
¡û
>W131245157
CARA01000214
Bacillota
Schnuerera ultunensis Esp [CARA]
38923
38997
+
Cys
GCA
[ENA]
¡û
>W131236478
AUMJ01000104
Bacillota
Aneurinibacillus terranovensis DSM 18919 [AUMJ]
402
476
+
Cys
GCA
[ENA]
¡û
>WENV180014340
FPIC01179614
[FPIC] soil metagenome; Soil
73
147
+
Cys
GCA
[ENA]
¡û
>WENV180037282
FVAA010815683
[FVAA] soil metagenome; Soil
115
41
-
Cys
GCA
[ENA]
¡û
>W141143464
AWSJ01000084
Bacillota
Aneurinibacillus aneurinilyticus ATCC 12856 [AWSJ]
2016
1942
-
Cys
GCA
[ENA]
¡û
>W141152351
AXBT01000016
Bacillota
Brevibacillus laterosporus PE36 [AXBT]
525
599
+
Cys
GCA
[ENA]
¡û
>W141207437
AZNU01000005
Bacillota
Thermicanus aegyptius DSM 12793 [AZNU]
251616
251690
+
Cys
GCA
[ENA]
¡û
>W141240310
CAGD01000018
Bacillota
Brevibacillus laterosporus GI-9 [CAGD]
504
578
+
Cys
GCA
[ENA]
¡û
>C181001258
AP017312
Bacillota
Aneurinibacillus soli CB4 [AP017312]
1439683
1439757
+
Cys
GCA
-
¡û
>C181027584
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
3760447
3760521
+
Cys
GCA
-
¡û
>C181118976
CP025545
Bacillota
Brevibacillus laterosporus ZQ2 [CP025545]
1598951
1599025
+
Cys
GCA
-
¡û
>C191089190
CP032410
Bacillota
Brevibacillus laterosporus E7593-50 [CP032410]
2752833
2752759
-
Cys
GCA
-
¡û
>C191095577
CP032848
Bacillota
Brevibacillus laterosporus Bl-zj [CP032848]
2909571
2909645
+
Cys
GCA
-
¡û
>W141728020
JNFS01000002
Bacillota
Brevibacillus laterosporus [JNFS]
192587
192661
+
Cys
GCA
[ENA]
¡û
>W1910183816
BJOA01000362
Bacillota
Aneurinibacillus migulanus NBRC 15520 [BJOA]
404
478
+
Cys
GCA
[ENA]
¡û
>W1910665278
MCHY01000005
Bacillota
Ammoniphilus oxalaticus RAOx-1 [MCHY]
749
823
+
Cys
GCA
[ENA]
¡û
>W1910873540
NDIP01000009
Bacillota
Brevibacillus laterosporus Lak 1210 [NDIP]
766
840
+
Cys
GCA
[ENA]
¡û
>W1911119422
NOLX01000001
Bacillota
Brevibacillus laterosporus OSY-I1 [NOLX]
557855
557781
-
Cys
GCA
[ENA]
¡û
>W1911199982
NREJ01000016
Actinomycetota
Mycobacterium abscessus subsp. massiliense A174 [NREJ]
10419
10493
+
Cys
GCA
[ENA]
¡û
>W1911681052
QJSB01000005
Bacillota
Brevibacillus laterosporus BON707 [QJSB]
558
632
+
Cys
GCA
[ENA]
¡û
>W1810270990
PRKQ01000039
Bacillota
Brevibacillus laterosporus BGSP11 [PRKQ]
48843
48769
-
Cys
GCA
[ENA]
¡û
>W1810271024
PRKR01000008
Bacillota
Brevibacillus laterosporus BGSP9 [PRKR]
628
702
+
Cys
GCA
[ENA]
¡û
>W1810271136
PRKS01000011
Bacillota
Brevibacillus laterosporus BGSP7 [PRKS]
628
702
+
Cys
GCA
[ENA]
¡û
>W1810671768
QJSZ01000013
Bacillota
Aneurinibacillus soli CECT 8566 [QJSZ]
10466
10392
-
Cys
GCA
[ENA]
¡û
>W1810888358
QUQX01000011
Bacillota
Brevibacillus sp. VP [QUQX]
622
696
+
Cys
GCA
[ENA]
¡û
>C151035288
CP007806
Bacillota
Brevibacillus laterosporus LMG 15441 [CP007806]
1524704
1524778
+
Cys
GCA
[Ensembl]
¡û
>W2010097431
BJOA01000362
Bacillota
Aneurinibacillus migulanus NBRC 15520 [BJOA]
404
478
+
Cys
GCA
[ENA]
¡û
>W2010103710
BJXX01000233
Bacillota
Aneurinibacillus danicus NBRC 102444 [BJXX]
4423
4349
-
Cys
GCA
[ENA]
¡û
>W2010270400
CABKST020000011
Bacillota
Aneurinibacillus aneurinilyticus [CABKST]
2016
1942
-
Cys
GCA
[ENA]
¡û
>W2010579616
JAAXNZ010000003
Bacillota
Brevibacillus laterosporus K75 [JAAXNZ]
628
702
+
Cys
GCA
[ENA]
¡û
>W2010682455
JACEIN010000011
Bacillota
Brevibacillus halotolerans s-14 [JACEIN]
407
481
+
Cys
GCA
[ENA]
¡û
>W2010806219
MCHY01000005
Bacillota
Ammoniphilus oxalaticus RAOx-1 [MCHY]
749
823
+
Cys
GCA
[ENA]
¡û
>W2010942243
NDIP01000009
Bacillota
Brevibacillus laterosporus Lak 1210 [NDIP]
766
840
+
Cys
GCA
[ENA]
¡û
>W2011012615
NOLX01000001
Bacillota
Brevibacillus laterosporus OSY-I1 [NOLX]
557855
557781
-
Cys
GCA
[ENA]
¡û
>W2011048198
NREJ01000016
Actinomycetota
Mycobacterium abscessus subsp. massiliense A174 [NREJ]
10419
10493
+
Cys
GCA
[ENA]
¡û
>W2011260911
QJSB01000005
Bacillota
Brevibacillus laterosporus BON707 [QJSB]
558
632
+
Cys
GCA
[ENA]
¡û
>W2011452872
RKQC01000090
Bacillota
Brevibacillus laterosporus NRS590 [RKQC]
551
625
+
Cys
GCA
[ENA]
¡û
>W2011452981
RKQD01000080
Bacillota
Brevibacillus laterosporus CCEB342 [RKQD]
274128
274054
-
Cys
GCA
[ENA]
¡û
>W2011547469
SDLI01000001
Bacillota
Ammoniphilus sp. CFH 90114 [SDLI]
284473
284547
+
Cys
GCA
[ENA]
¡û
>W2011547756
SDLR01000002
Bacillota
Ammoniphilus sp. YIM 78166 [SDLR]
490216
490290
+
Cys
GCA
[ENA]
¡û
>W2011547800
SDLR01000031
Bacillota
Ammoniphilus sp. YIM 78166 [SDLR]
749
823
+
Cys
GCA
[ENA]
¡û
>W2110065962
BORK01000002
Bacillota
Brevibacillus halotolerans J5TS2 [BORK]
618
692
+
Cys
GCA
[ENA]
¡û
>W2110319067
JADGMT010000010
Bacillota
Brevibacillus laterosporus SAM19 [JADGMT]
119220
119146
-
Cys
GCA
[ENA]
¡û
>W2110506531
JAFJNS010000001
Bacillota
Aneurinibacillus sp. BA2021 [JAFJNS]
821760
821686
-
Cys
GCA
[ENA]
¡û
>W2110539061
JAGGKT010000001
Bacillota
Ammoniphilus resinae DSM 24738 [JAGGKT]
570281
570355
+
Cys
GCA
[ENA]
¡û
>W2110539101
JAGGKT010000048
Bacillota
Ammoniphilus resinae DSM 24738 [JAGGKT]
2405
2331
-
Cys
GCA
[ENA]
¡û
>C211161168
CP062262
Actinomycetota
Brevibacterium sp. JNUCC-42 [CP062262]
2130878
2130804
-
Cys
GCA
-
¡û
>C211382778
CP080764
Bacillota
Aneurinibacillus thermoaerophilus CCM 8960 [CP080764]
2546141
2546067
-
Cys
GCA
-
¡û
>W1510019671
BBWZ01000060
Bacillota
Aneurinibacillus tyrosinisolvens LL-002 [BBWZ]
18770
18696
-
Cys
GCA
[ENA]
¡û
>W1510045080
CCMI01000118
Bacillota
Aneurinibacillus migulanus [CCMI]
895
969
+
Cys
GCA
[ENA]
¡û
>W1510045154
CCMJ01000079
Bacillota
Aneurinibacillus migulanus [CCMJ]
19061
18987
-
Cys
GCA
[ENA]
¡û
>W2110745426
LDII01000027
Bacillota
Brevibacillus laterosporus G25-128 [LDII]
1054
1128
+
Cys
GCA
[ENA]
¡û
>W2110745504
LDIJ01000018
Bacillota
Brevibacillus laterosporus G25-129 [LDIJ]
1856
1930
+
Cys
GCA
[ENA]
¡û
>W2110745601
LDIK01000017
Bacillota
Brevibacillus laterosporus G25-130 [LDIK]
1841
1915
+
Cys
GCA
[ENA]
¡û
>W2110745751
LDIL01000073
Bacillota
Brevibacillus laterosporus G25-131 [LDIL]
50586
50512
-
Cys
GCA
[ENA]
¡û
>C231586761
CP116887
Bacillota
Aneurinibacillus sp. Ricciae_BoGa-3 [CP116887]
3760719
3760645
-
Cys
GCA
-
¡û
>C231587212
CP116902
Bacillota
Aneurinibacillus sp. B1 [CP116902]
1046881
1046955
+
Cys
GCA
-
¡û
>C241131439
CP048799
Bacillota
Brevibacillus sp. 7WMA2 [CP048799]
26293
26367
+
Cys
GCA
-
¡û
>W1511522822
JYBN01000071
Bacillota
Aneurinibacillus migulanus nagano [JYBN]
19061
18987
-
Cys
GCA
[ENA]
¡û
>W1511522973
JYBO01000090
Bacillota
Aneurinibacillus migulanus NCTC 7096 [JYBO]
895
969
+
Cys
GCA
[ENA]
¡û
>W1511706554
LGUG01000004
Bacillota
Aneurinibacillus migulanus DSM 2895 [LGUG]
1288026
1288100
+
Cys
GCA
[ENA]
¡û
>W11172360
AFRV01000006
Bacillota
Brevibacillus laterosporus LMG 15441 [AFRV]
365755
365681
-
Cys
GCA
[ENA]
¡û
>C161066978
CP014140
Bacillota
Aneurinibacillus sp. XH2 Xh2 [CP014140]
1161105
1161179
+
Cys
GCA
[Ensembl]
¡û
>W1610638160
LIXL01000079
Bacillota
Aneurinibacillus migulanus [LIXL]
505
579
+
Cys
GCA
[ENA]
¡û
>W1610920184
LSSO01000173
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
483
557
+
Cys
GCA
[ENA]
¡û
>W1611063285
MBFH01000007
Bacillota
Brevibacillus laterosporus [MBFH]
243950
243876
-
Cys
GCA
[ENA]
¡û
>W1710517260
FNDE01000042
Bacillota
Aneurinibacillus thermoaerophilus [FNDE]
29759
29685
-
Cys
GCA
[ENA]
¡û
>W1710518662
FNED01000063
Bacillota
Aneurinibacillus migulanus [FNED]
10955
10881
-
Cys
GCA
[ENA]
¡û
>W1710774027
LIXL01000079
Bacillota
Aneurinibacillus migulanus [LIXL]
505
579
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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