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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370707 (25 seq.)
>W131237488
AUOO01000274
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-I20 [AUOO]
38832
38758
-
Glu
CTC
[ENA]
¡û
>W1711386373
MEFG01000021
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
52316
52390
+
Glu
CTC
[ENA]
¡û
>W1712105802
NISK01000001
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
443234
443308
+
Glu
CTC
[ENA]
¡û
>C171094573
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
3463648
3463574
-
Glu
CTC
-
¡û
>WENV181155698
OEID01354857
[OEID] soil metagenome; soil
142
68
-
Glu
CTC
[ENA]
¡û
>WENV181384931
OFRI01020757
[OFRI] wastewater metagenome; Exp Tend VB 90WW
936
1010
+
Glu
CTC
[ENA]
¡û
>WENV183749654
PPFU01196893
[PPFU] hypolithon metagenome; Antarctic Hypolithon
7789
7863
+
Glu
CTC
[ENA]
¡û
>WENV170010496
APMI01018590
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1880
1954
+
Glu
CTC
[ENA]
¡û
>WENV170596680
FUIF01009205
[FUIF] marine metagenome; marine
8342
8416
+
Glu
CTC
[ENA]
¡û
>WENV170956460
MJUP01012243
[MJUP] soil metagenome; viral particles from soil sample MGM
64
138
+
Glu
CTC
[ENA]
¡û
>W141484699
JFYV01000001
Alphaproteobacteria
Sphingomonas sp. RIT328 [JFYV]
309707
309633
-
Glu
CTC
[ENA]
¡û
>C191171229
CP039704
Alphaproteobacteria
Hankyongella ginsenosidimutans W1-2-3 [CP039704]
1891194
1891268
+
Glu
TTC
-
¡û
>SRA1003237
SRR002326.328117
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
130
204
+
Glu
CTC
[SRA]
>W1810390333
PXYJ01000001
Alphaproteobacteria
Allosphingosinicella vermicomposti KCTC 22446 [PXYJ]
545264
545190
-
Glu
CTC
[ENA]
¡û
>W1810917818
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
1536166
1536240
+
Glu
CTC
[ENA]
¡û
>SRA1014865
SRR023845.351377
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
237
163
-
Glu
CTC
[SRA]
>C151044390
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
4539139
4539065
-
Glu
CTC
[Ensembl]
¡û
>W2011588616
SIHO01000001
Alphaproteobacteria
Polymorphobacter sp. DJ1R-1 [SIHO]
1032219
1032145
-
Glu
CTC
[ENA]
¡û
>W2110031235
BMMC01000018
Alphaproteobacteria
Sphingopyxis bauzanensis CGMCC 1.8959 [BMMC]
9042
9116
+
Glu
CTC
[ENA]
¡û
>W2110425635
JAELTW010000055
Alphaproteobacteria
Sphingomonas sp. ASV18 [JAELTW]
37973
38047
+
Glu
CTC
[ENA]
¡û
>W2110690825
JAIOKB010000001
Alphaproteobacteria
Sphingomonas yunnanensis YIM 3 [JAIOKB]
53584
53510
-
Glu
CTC
[ENA]
¡û
>C211060356
CP043639
Alphaproteobacteria
Sphingomonas sp. NBWT7 [CP043639]
3207231
3207157
-
Glu
CTC
-
¡û
>C231620043
CP119315
Alphaproteobacteria
Sphingomonas sp. [CP119315]
2647351
2647277
-
Glu
CTC
-
¡û
>C241365899
CP141587
Alphaproteobacteria
Sphingomonas sp. LY29 [CP141587]
2114582
2114508
-
Glu
CTC
-
¡û
>W1710083112
BDJB01000014
Alphaproteobacteria
Sphingomonas sp. TZW2008 [BDJB]
258332
258406
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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