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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370766 (61 seq.)
>W1711191070
LWSI01000005
Planctomycetota
Mariniblastus fucicola FC18 [LWSI]
63580
63651
+
Thr
GGT
[ENA]
¡û
>W1711191165
LWSK01000005
Planctomycetota
Rubripirellula obstinata [LWSK]
44688
44759
+
Thr
GGT
[ENA]
¡û
>WENV180074155
MPMA02124142
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
1
75
+
Thr
GGT
[ENA]
¡û
>WENV180081929
MPMC02165044
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
2107
2033
-
Thr
GGT
[ENA]
¡û
>WENV180085259
MPMD02300654
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
27750
27676
-
Thr
GGT
[ENA]
¡û
>WENV180389599
OBPJ01055993
[OBPJ] marine metagenome; seawater
15
87
+
Thr
GGT
[ENA]
¡û
>WENV180690076
OCZB010516469
[OCZB] metagenome; Oyster Gut Contents
17
88
+
Thr
GGT
[ENA]
¡û
>WENV181308825
OFIT01021853
[OFIT] marine metagenome; seawater
372
300
-
Thr
GGT
[ENA]
¡û
>WENV019171
AACY020526902
Marine microbial communities from Global Ocean Sampling (GOS)
3857
3781
-
Thr
GGT
[ENA]
>WENV182553495
OJCR01007474
[OJCR] seawater metagenome; Sea water
507
579
+
Thr
GGT
[ENA]
¡û
>WENV182578852
OJGP01007219
[OJGP] seawater metagenome; Sea water
170
242
+
Thr
GGT
[ENA]
¡û
>WENV183694199
ORMF012199847
[ORMF] groundwater metagenome; groundwater
558
484
-
Thr
GGT
[ENA]
¡û
>WENV183716862
PDWJ01000229
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5173
5247
+
Thr
GGT
[ENA]
¡û
>WENV183725041
PJQE01134042
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
177
103
-
Thr
GGT
[ENA]
¡û
>WENV170121318
CENL01105629
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
789
860
+
Thr
GGT
[ENA]
¡û
>WENV170275567
CERM01149458
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
624
552
-
Thr
GGT
[ENA]
¡û
>WENV170536280
CEWP01166253
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
906
978
+
Thr
GGT
[ENA]
¡û
>WENV170675501
LCWZ01097071
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1
72
+
Thr
GGT
[ENA]
¡û
>WENV170765735
LWDU01039223
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
141081
141155
+
Thr
GGT
[ENA]
¡û
>WENV170766197
LWDU01040838
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
13379
13305
-
Thr
GGT
[ENA]
¡û
>W1911146613
NPDI01000002
Planctomycetota
Rhodopirellula sp. MGV [NPDI]
27667
27596
-
Thr
GGT
[ENA]
¡û
>W1911278878
NTFY01000067
Planctomycetota
Rhodopirellula sp. SM50 [NTFY]
48577
48506
-
Thr
GGT
[ENA]
¡û
>W1810237713
PPHI01000012
Planctomycetota
Rhodopirellula baltica BR-MGV [PPHI]
77571
77500
-
Thr
GGT
[ENA]
¡û
>W1810329533
PUHY01000012
Planctomycetota
Blastopirellula marina Hex-1 MGV [PUHY]
49487
49415
-
Thr
GGT
[ENA]
¡û
>W1810329553
PUHZ01000002
Planctomycetota
Blastopirellula marina Nap-Phe MGV [PUHZ]
120952
121024
+
Thr
GGT
[ENA]
¡û
>W1810329567
PUHZ01000009
Planctomycetota
Blastopirellula marina Nap-Phe MGV [PUHZ]
48602
48530
-
Thr
GGT
[ENA]
¡û
>W1810329653
PUIA01000026
Planctomycetota
Blastopirellula marina HEX-2 MGV [PUIA]
45268
45196
-
Thr
GGT
[ENA]
¡û
>W1810329717
PUIB01000014
Planctomycetota
Blastopirellula marina NAP PRIS-MGV [PUIB]
5122
5194
+
Thr
GGT
[ENA]
¡û
>W1810329731
PUIB01000019
Planctomycetota
Blastopirellula marina NAP PRIS-MGV [PUIB]
47983
47911
-
Thr
GGT
[ENA]
¡û
>W1810445494
PZKM01000014
Planctomycetota
Blastopirellula marina HEX PRIS-MGV [PZKM]
5122
5194
+
Thr
GGT
[ENA]
¡û
>W1810445508
PZKM01000019
Planctomycetota
Blastopirellula marina HEX PRIS-MGV [PZKM]
47983
47911
-
Thr
GGT
[ENA]
¡û
>W1810756084
QPEV01000012
Planctomycetota
Bremerella cremea HEX-1 MGV [QPEV]
49487
49415
-
Thr
GGT
[ENA]
¡û
>W1810756128
QPEW01000026
Planctomycetota
Bremerella cremea HEX-2 MGV [QPEW]
45268
45196
-
Thr
GGT
[ENA]
¡û
>W1810756215
QPEX01000046
Planctomycetota
Bremerella cremea HEX PRIS-MGV [QPEX]
45589
45517
-
Thr
GGT
[ENA]
¡û
>W2010315531
CACHRZ010000001
Planctomycetota
Planctomycetes bacterium [CACHRZ]
17753
17679
-
Thr
GGT
[ENA]
¡û
>W2010612646
JABRWO010000004
Planctomycetota
Planctomycetes bacterium FF15 [JABRWO]
45826
45754
-
Thr
GGT
[ENA]
¡û
>W2010681922
JACEHH010000021
Planctomycetota
Rhodopirellula sp. JC639 [JACEHH]
152426
152355
-
Thr
GGT
[ENA]
¡û
>W2011020183
NPDI01000002
Planctomycetota
Rhodopirellula sp. MGV [NPDI]
27667
27596
-
Thr
GGT
[ENA]
¡û
>W2011072541
NTFY01000067
Planctomycetota
Rhodopirellula sp. SM50 [NTFY]
48577
48506
-
Thr
GGT
[ENA]
¡û
>W2011610081
SJPF01000003
Planctomycetota
Planctomycetes bacterium Enr8 [SJPF]
674458
674530
+
Thr
GGT
[ENA]
¡û
>W2011610104
SJPG01000001
Planctomycetota
Planctomycetes bacterium Pan54 [SJPG]
119037
119108
+
Thr
GGT
[ENA]
¡û
>W2011610199
SJPI01000001
Planctomycetota
Planctomycetes bacterium Pla22 [SJPI]
2462142
2462213
+
Thr
GGT
[ENA]
¡û
>W2011610537
SJPN01000004
Planctomycetota
Planctomycetes bacterium Pla52n [SJPN]
600777
600706
-
Thr
GGT
[ENA]
¡û
>W2011610971
SJPW01000003
Planctomycetota
Planctomycetes bacterium Poly51 [SJPW]
238161
238232
+
Thr
GGT
[ENA]
¡û
>W2011611062
SJPX01000004
Planctomycetota
Planctomycetes bacterium Poly59 [SJPX]
752990
753061
+
Thr
GGT
[ENA]
¡û
>W2012124754
VRLW01000001
Planctomycetota
Rubripirellula obstinata LF1 [VRLW]
5377340
5377411
+
Thr
GGT
[ENA]
¡û
>W2012136395
VSZO01000002
Planctomycetota
Rhodopirellula sp. JC635 [VSZO]
240888
240817
-
Thr
GGT
[ENA]
¡û
>W2012196673
VWOX01000003
Planctomycetota
Rhodopirellula sp. JC645 [VWOX]
34395
34324
-
Thr
GGT
[ENA]
¡û
>W2012426323
WRPS01000007
Planctomycetota
Rhodopirellula sp. JC637 [WRPS]
240795
240724
-
Thr
GGT
[ENA]
¡û
>C201065613
CP036434
Planctomycetota
Planctomycetes bacterium Poly30 [CP036434]
5447555
5447481
-
Thr
GGT
-
¡û
>C231182949
CP083740
Planctomycetota
Bremerella volcania TYQ1 [CP083740]
5026078
5026150
+
Thr
GGT
-
¡û
>C231609971
CP118164
Planctomycetota
Bremerella sp. P1 [CP118164]
3332981
3333053
+
Thr
GGT
-
¡û
>C241043734
CP036263
Planctomycetota
Adhaeretor mobilis HG15A2 [CP036263]
5872966
5872894
-
Thr
GGT
-
¡û
>C241044247
CP036289
Planctomycetota
Bremerella volcania Pan97 [CP036289]
5882346
5882274
-
Thr
GGT
-
¡û
>C241044325
CP036292
Planctomycetota
Rosistilla oblonga CA51 [CP036292]
5971158
5971230
+
Thr
GGT
-
¡û
>C241070076
CP042912
Planctomycetota
Mariniblastus fucicola FC18 [CP042912]
4992680
4992609
-
Thr
GGT
-
¡û
>C11116908
CP002546
Planctomycetota
Rubinisphaera brasiliensis DSM 5305 [CP002546]
2383045
2382974
-
Thr
GGT
[Ensembl]
¡û
>W11138318
AEIC01000007
Planctomycetota
Rubinisphaera brasiliensis DSM 5305 [AEIC]
68658
68587
-
Thr
GGT
[ENA]
¡û
>C161033402
CP011272
Planctomycetota
Pirellula sp. SH-Sr6A [CP011272]
4717936
4717864
-
Thr
GGT
-
¡û
>W1610992673
LWSI01000005
Planctomycetota
Mariniblastus fucicola FC18 [LWSI]
63580
63651
+
Thr
GGT
[ENA]
¡û
>W1610992768
LWSK01000005
Planctomycetota
Rubripirellula obstinata [LWSK]
44688
44759
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK