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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370778 (43 seq.)
>W1711628641
MPOI01000011
Myxococcota
Archangium sp. Cb G35 [MPOI]
423820
423892
+
Glu
CTC
[ENA]
¡û
>W1711628642
MPOI01000011
Myxococcota
Archangium sp. Cb G35 [MPOI]
423920
423992
+
Glu
CTC
[ENA]
¡û
>WENV180016100
FSUC01000170
[FSUC] metagenome; soil
3359
3287
-
Glu
CTC
[ENA]
¡û
>WENV180023589
FTIC01022791
[FTIC] metagenome; soil
86
158
+
Glu
CTC
[ENA]
¡û
>WENV180032480
FTKA01006239
[FTKA] metagenome; soil
183
111
-
Glu
CTC
[ENA]
¡û
>W141806661
JPMI01000220
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
140723
140651
-
Glu
CTC
[ENA]
¡û
>W141806662
JPMI01000220
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
140622
140550
-
Glu
CTC
[ENA]
¡û
>W1911701590
QNUN01000002
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
88244
88316
+
Glu
CTC
[ENA]
¡û
>W1810452239
PZOX01000022
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
56137
56209
+
Glu
CTC
[ENA]
¡û
>W1810452240
PZOX01000022
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
56259
56331
+
Glu
CTC
[ENA]
¡û
>W1810884666
QUMU01000002
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
652930
653002
+
Glu
CTC
[ENA]
¡û
>W1810884667
QUMU01000002
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
653030
653102
+
Glu
CTC
[ENA]
¡û
>C151008206
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
4191460
4191388
-
Glu
CTC
[Ensembl]
¡û
>C151083576
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
8898017
8898089
+
Glu
CTC
[Ensembl]
¡û
>C151083577
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
8898117
8898189
+
Glu
CTC
[Ensembl]
¡û
>W2010103378
BJXR01000030
Myxococcota
Myxococcus fulvus NBRC 100333 [BJXR]
42877
42949
+
Glu
CTC
[ENA]
¡û
>W2010489416
JAAIYB010000038
Myxococcota
Myxococcus sp. AM301 [JAAIYB]
24720
24792
+
Glu
CTC
[ENA]
¡û
>W2010587761
JABBJJ010000094
Myxococcota
Pyxidicoccus fallax DSM 14698 [JABBJJ]
32792
32720
-
Glu
CTC
[ENA]
¡û
>W2010591420
JABEKY010000020
Myxococcota
Corallococcus exiguus AB016 [JABEKY]
26787
26715
-
Glu
CTC
[ENA]
¡û
>W2010591537
JABELA010000079
Myxococcota
Corallococcus exiguus AB051 [JABELA]
5160
5088
-
Glu
CTC
[ENA]
¡û
>W2010603461
JABJTR010000038
Myxococcota
Pyxidicoccus fallax CA059B [JABJTR]
4671
4743
+
Glu
CTC
[ENA]
¡û
>W2010636052
JABUMT010000004
Myxococcota
Myxococcus sp. CA056 [JABUMT]
744406
744334
-
Glu
CTC
[ENA]
¡û
>W2011278130
QNUN01000002
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
88244
88316
+
Glu
CTC
[ENA]
¡û
>W2011679121
SRLW01000008
Myxococcota
Myxococcus sp. AB025B [SRLW]
51927
51855
-
Glu
CTC
[ENA]
¡û
>W2110395371
JADWYI010000001
Myxococcota
Archangium primigenium ATCC 29037 [JADWYI]
3804196
3804124
-
Glu
CTC
[ENA]
¡û
>W2110395372
JADWYI010000001
Myxococcota
Archangium primigenium ATCC 29037 [JADWYI]
3804093
3804021
-
Glu
CTC
[ENA]
¡û
>W2110428060
JAEMGR010000013
Myxococcota
Myxococcaceae bacterium JPH2 [JAEMGR]
238793
238721
-
Glu
CTC
[ENA]
¡û
>W2110428061
JAEMGR010000013
Myxococcota
Myxococcaceae bacterium JPH2 [JAEMGR]
238649
238577
-
Glu
CTC
[ENA]
¡û
>W2110428062
JAEMGR010000013
Myxococcota
Myxococcaceae bacterium JPH2 [JAEMGR]
238505
238433
-
Glu
CTC
[ENA]
¡û
>W2110428063
JAEMGR010000013
Myxococcota
Myxococcaceae bacterium JPH2 [JAEMGR]
238361
238289
-
Glu
CTC
[ENA]
¡û
>W2110627022
JAHNZT010000019
Myxococcota
Citreicoccus inhibens M34 [JAHNZT]
46344
46416
+
Glu
CTC
[ENA]
¡û
>W2110627023
JAHNZT010000019
Myxococcota
Citreicoccus inhibens M34 [JAHNZT]
46488
46560
+
Glu
CTC
[ENA]
¡û
>W2110659246
JAHXBF010000016
Myxococcota
Hyalangium sp. H56D21 [JAHXBF]
170210
170282
+
Glu
CTC
[ENA]
¡û
>W2110692473
JAIQDF010000004
Myxococcota
Myxococcus sp. AS-1-15 [JAIQDF]
202712
202784
+
Glu
CTC
[ENA]
¡û
>W2110692532
JAIQDG010000002
Myxococcota
Myxococcus sp. RHSTA-1-4 [JAIQDG]
18928
18856
-
Glu
CTC
[ENA]
¡û
>W2110692603
JAIQDH010000003
Myxococcota
Myxococcus sp. XM-1-1-1 [JAIQDH]
471433
471361
-
Glu
CTC
[ENA]
¡û
>C211258764
CP069338
Myxococcota
Archangium violaceum SDU34 [CP069338]
11791658
11791730
+
Glu
CTC
-
¡û
>C211258765
CP069338
Myxococcota
Archangium violaceum SDU34 [CP069338]
11791780
11791852
+
Glu
CTC
-
¡û
>C211259677
CP069396
Myxococcota
Archangium violaceum SDU8 [CP069396]
8724390
8724462
+
Glu
CTC
-
¡û
>C211259678
CP069396
Myxococcota
Archangium violaceum SDU8 [CP069396]
8724512
8724584
+
Glu
CTC
-
¡û
>C131011695
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
3897893
3897821
-
Glu
CTC
[Ensembl]
¡û
>W1710513698
FNAJ01000003
Myxococcota
Myxococcus virescens [FNAJ]
180492
180564
+
Glu
CTC
[ENA]
¡û
>W1710553997
FOIB01000008
Myxococcota
Myxococcus fulvus [FOIB]
487675
487603
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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