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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370829 (87 seq.)
>W1710861733
LMDV01000013
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
178026
177952
-
Val
TAC
[ENA]
¡û
>W1710867155
LMIA01000013
Actinomycetota
Nocardioides sp. Root190 [LMIA]
433667
433593
-
Val
TAC
[ENA]
¡û
>W1710867753
LMIN01000013
Actinomycetota
Nocardioides sp. Root224 [LMIN]
178027
177953
-
Val
TAC
[ENA]
¡û
>W1710867838
LMIP01000014
Actinomycetota
Nocardioides sp. Root79 [LMIP]
15522
15596
+
Val
TAC
[ENA]
¡û
>W1710867999
LMIT01000002
Actinomycetota
Nocardioides sp. Root240 [LMIT]
15522
15596
+
Val
TAC
[ENA]
¡û
>W1710878752
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
1145762
1145834
+
Val
TAC
[ENA]
¡û
>W1712084156
NHQT01000048
Actinomycetota
Nocardioides sp. XL1 [NHQT]
17737
17811
+
Val
TAC
[ENA]
¡û
>C015196
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
2136462
2136536
+
Val
TAC
[Ensembl]
¡û
>WENV180019295
FTBU01000206
[FTBU] metagenome; soil
3632
3706
+
Val
TAC
[ENA]
¡û
>WENV180030865
FTJN01240642
[FTJN] metagenome; soil
373
446
+
Val
TAC
[ENA]
¡û
>WENV180304527
OBJI01102780
[OBJI] soil metagenome; soil
81
7
-
Val
TAC
[ENA]
¡û
>WENV181222937
OFDC01000739
[OFDC] hot springs metagenome; Water
12401
12475
+
Val
TAC
[ENA]
¡û
>W141277561
JAER01000043
Actinomycetota
Nocardioides sp. J54 [JAER]
15715
15789
+
Val
TAC
[ENA]
¡û
>W09103268
AAJB01000023
Actinomycetota
Nocardioides sp. JS614 [AAJB]
18041
17967
-
Val
TAC
[ENA]
¡û
>C191104207
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
2639081
2639008
-
Val
TAC
-
¡û
>W141564349
JIAR01000026
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
22188
22262
+
Val
TAC
[ENA]
¡û
>W141564526
JIAV01000018
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
351822
351748
-
Val
TAC
[ENA]
¡û
>W141815855
JQJL01000012
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
30976
31050
+
Val
TAC
[ENA]
¡û
>W1910141217
BIFF01000001
Actinomycetota
Nocardioides sp. LS1 [BIFF]
532282
532354
+
Val
TAC
[ENA]
¡û
>W1810089867
PGEZ01000002
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
504447
504374
-
Val
TAC
[ENA]
¡û
>W1810504000
QBKO01000009
Actinomycetota
Nocardioides sp. CF167 [QBKO]
25227
25300
+
Val
TAC
[ENA]
¡û
>W2010083024
BIFF01000001
Actinomycetota
Nocardioides sp. LS1 [BIFF]
532282
532354
+
Val
TAC
[ENA]
¡û
>W2010106147
BKAE01000008
Actinomycetota
Nocardioides szechwanensis NBRC 108562 [BKAE]
289085
289011
-
Val
TAC
[ENA]
¡û
>W2010106194
BKAF01000024
Actinomycetota
Nocardioides psychrotolerans NBRC 108563 [BKAF]
17279
17353
+
Val
TAC
[ENA]
¡û
>W2010472464
JAAHFJ010000005
Actinomycetota
Mumia sp. ZJ1417 [JAAHFJ]
460959
460885
-
Val
TAC
[ENA]
¡û
>W2010472504
JAAHFK010000004
Actinomycetota
Mumia sp. ZJ430 [JAAHFK]
353715
353789
+
Val
TAC
[ENA]
¡û
>W2010603363
JABJRA010000004
Actinomycetota
Nocardioides sp. zg-DK7169 [JABJRA]
17734
17807
+
Val
TAC
[ENA]
¡û
>W2010668426
JACBZM010000001
Actinomycetota
Nocardioides aromaticivorans DSM 15131 [JACBZM]
233061
232988
-
Val
TAC
[ENA]
¡û
>W2010669114
JACCAC010000001
Actinomycetota
Nocardioides perillae DSM 24552 [JACCAC]
2070272
2070345
+
Val
TAC
[ENA]
¡û
>W2010669151
JACCAD010000001
Actinomycetota
Nocardioides lianchengensis CGMCC 4.6858 [JACCAD]
641158
641232
+
Val
TAC
[ENA]
¡û
>W2010670735
JACCBF010000001
Actinomycetota
Nocardioides kongjuensis DSM 19082 [JACCBF]
628348
628421
+
Val
TAC
[ENA]
¡û
>W2010682113
JACEIC010000001
Actinomycetota
Nocardioides sp. CGMCC 1.13656 [JACEIC]
15793
15865
+
Val
TAC
[ENA]
¡û
>W2010692024
JACGXA010000001
Actinomycetota
Nocardioides ginsengisegetis DSM 21349 [JACGXA]
1201991
1202063
+
Val
TAC
[ENA]
¡û
>W2010715546
JACHWR010000003
Actinomycetota
Nocardioides soli DSM 105498 [JACHWR]
85653
85725
+
Val
TAC
[ENA]
¡û
>W2010744212
JACKXE010000002
Actinomycetota
Nocardioides sp. KIGAM211 [JACKXE]
488512
488439
-
Val
TAC
[ENA]
¡û
>W2011417155
RHDV01000007
Actinomycetota
Nocardioides sp. X2025 [RHDV]
62198
62125
-
Val
TAC
[ENA]
¡û
>W2011447719
RKHO01000001
Actinomycetota
Marmoricola aurantiacus DSM 12652 [RKHO]
1233425
1233498
+
Val
TAC
[ENA]
¡û
>W2011675941
SPUI01000013
Actinomycetota
Nocardioides sp. 503 [SPUI]
16204
16278
+
Val
TAC
[ENA]
¡û
>W2011694938
STGL01000002
Actinomycetota
Nocardioides sp. GY 10127 [STGL]
436762
436690
-
Val
TAC
[ENA]
¡û
>W2011695386
STGW01000003
Actinomycetota
Nocardioides caeni DSM 23134 [STGW]
334567
334640
+
Val
TAC
[ENA]
¡û
>W2011982156
VDFQ02000002
Actinomycetota
Mumia sp. Z350 [VDFQ]
459790
459718
-
Val
TAC
[ENA]
¡û
>W2011985402
VDMP01000007
Actinomycetota
Nocardioides albidus CCTCC AB 2015297 [VDMP]
18238
18165
-
Val
TAC
[ENA]
¡û
>W2012019500
VFNU01000001
Actinomycetota
Nocardioides sp. SLBN-35 [VFNU]
3675953
3675880
-
Val
TAC
[ENA]
¡û
>W2012341384
WITM01000012
Actinomycetota
Nocardioides sp. dk4132 [WITM]
110939
110866
-
Val
TAC
[ENA]
¡û
>W2012356832
WJYO01000002
Actinomycetota
Mumia xiangluensis NEAU-KD1 T [WJYO]
459790
459718
-
Val
TAC
[ENA]
¡û
>W2012426732
WSEK01000005
Actinomycetota
Nocardioides sp. MAH-18 [WSEK]
15793
15865
+
Val
TAC
[ENA]
¡û
>W2012433984
WTFR01000010
Actinomycetota
Nocardioides sp. ZJ1313 [WTFR]
95714
95641
-
Val
TAC
[ENA]
¡û
>W2012434008
WTFS01000002
Actinomycetota
Nocardioides sp. ZJ1307 [WTFS]
887838
887765
-
Val
TAC
[ENA]
¡û
>W2012442216
WUEK01000009
Actinomycetota
Nocardioides sp. YIM 123512 [WUEK]
218639
218713
+
Val
TAC
[ENA]
¡û
>W2110220981
JACJGL010000001
Actinomycetota
Nocardioides dongkuii 406 [JACJGL]
17986
18059
+
Val
TAC
[ENA]
¡û
>W2110221054
JACJGM010000018
Actinomycetota
Nocardioides lijunqiniae S-531 [JACJGM]
101303
101229
-
Val
TAC
[ENA]
¡û
>W2110221103
JACJGN010000028
Actinomycetota
Nocardioides lijunqiniae 1598 [JACJGN]
60239
60166
-
Val
TAC
[ENA]
¡û
>W2110303416
JADCLI010000003
Actinomycetota
Pimelobacter simplex 3E [JADCLI]
183076
183002
-
Val
TAC
[ENA]
¡û
>W2110326539
JADIVZ010000007
Actinomycetota
Nocardioides acrostichi CBS4Y-1 [JADIVZ]
170713
170640
-
Val
TAC
[ENA]
¡û
>W2110446515
JAERTX010000024
Actinomycetota
Nocardioides sp. zg-536 [JAERTX]
4023
3950
-
Val
TAC
[ENA]
¡û
>W2110458338
JAFBBY010000001
Actinomycetota
Nocardioides nitrophenolicus DSM 15529 [JAFBBY]
5037457
5037530
+
Val
TAC
[ENA]
¡û
>W2110584097
JAGYYC010000015
Actinomycetota
Nocardioides sp. zg-ZUI104 [JAGYYC]
17204
17277
+
Val
TAC
[ENA]
¡û
>W2110645640
JAHTKU010000011
Actinomycetota
Nocardioides daeguensis 2C1-5 [JAHTKU]
196202
196275
+
Val
TAC
[ENA]
¡û
>W2110656864
JAHWCI010000006
Actinomycetota
Mumia sp. zg.B17 [JAHWCI]
435687
435613
-
Val
TAC
[ENA]
¡û
>W2110656923
JAHWCJ010000004
Actinomycetota
Mumia sp. zg.B21 [JAHWCJ]
340452
340526
+
Val
TAC
[ENA]
¡û
>W2110656966
JAHWCK010000003
Actinomycetota
Mumia sp. zg.B53 [JAHWCK]
9684
9758
+
Val
TAC
[ENA]
¡û
>C211032005
CP022295
Actinomycetota
Nocardioides aromaticivorans IC177 [CP022295]
3290554
3290481
-
Val
TAC
-
¡û
>C211125549
CP059903
Actinomycetota
Nocardioides sp. S-713 [CP059903]
3135782
3135709
-
Val
TAC
-
¡û
>C211153045
CP061769
Actinomycetota
Nocardioides sp. ZJ1313 [CP061769]
2726518
2726445
-
Val
TAC
-
¡û
>C211330954
CP074406
Actinomycetota
Nocardioides sp. zg-536 [CP074406]
1344976
1345049
+
Val
TAC
-
¡û
>C211342541
CP076104
Actinomycetota
Nocardioides sp. LMS-CY [CP076104]
3518513
3518441
-
Val
TAC
-
¡û
>C231252289
CP088262
Actinomycetota
Nocardioides sp. cx-173 [CP088262]
2770731
2770657
-
Val
TAC
-
¡û
>C241098639
CP045649
Actinomycetota
Nocardioides sp. dk884 [CP045649]
2778042
2777969
-
Val
TAC
-
¡û
>C241179992
CP059901
Actinomycetota
Mumia sp. ZJ1417 [CP059901]
1480775
1480849
+
Val
TAC
-
¡û
>C241253983
CP124681
Actinomycetota
Nocardioides sp. QY071 [CP124681]
2033528
2033601
+
Val
TAC
-
¡û
>W2130041065
JAIQZJ010000013
Actinomycetota
Nocardioides sp. GBK3QG-3 [JAIQZJ]
17893
17965
+
Val
TAC
[ENA]
¡û
>W1511398128
JTDJ01000122
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
35057
34983
-
Val
TAC
[ENA]
¡û
>C161082880
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
3900701
3900627
-
Val
TAC
[Ensembl]
¡û
>W1610051396
BBGV01000354
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
111
39
-
Val
TAC
[ENA]
¡û
>W1610724079
LMDV01000013
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
178026
177952
-
Val
TAC
[ENA]
¡û
>W1610729501
LMIA01000013
Actinomycetota
Nocardioides sp. Root190 [LMIA]
433667
433593
-
Val
TAC
[ENA]
¡û
>W1610730099
LMIN01000013
Actinomycetota
Nocardioides sp. Root224 [LMIN]
178027
177953
-
Val
TAC
[ENA]
¡û
>W1610730184
LMIP01000014
Actinomycetota
Nocardioides sp. Root79 [LMIP]
15522
15596
+
Val
TAC
[ENA]
¡û
>W1610730345
LMIT01000002
Actinomycetota
Nocardioides sp. Root240 [LMIT]
15522
15596
+
Val
TAC
[ENA]
¡û
>W1610741098
LMRF01000001
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
1145762
1145834
+
Val
TAC
[ENA]
¡û
>WENV077426
AAFX01037351
Soil microbial communities from Minnesota Farm
717
643
-
Val
TAC
[ENA]
>W1710047774
BBGV01000354
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
111
39
-
Val
TAC
[ENA]
¡û
>W1710083215
BDJE01000046
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
17817
17891
+
Val
TAC
[ENA]
¡û
>W1710083341
BDJG01000047
Actinomycetota
Nocardioides sp. PD653 [BDJG]
25165
25091
-
Val
TAC
[ENA]
¡û
>W1710512567
FMZM01000019
Actinomycetota
Nocardioides lianchengensis [FMZM]
46874
46800
-
Val
TAC
[ENA]
¡û
>W1710523585
FNIC01000006
Actinomycetota
Nocardioides szechwanensis [FNIC]
289447
289373
-
Val
TAC
[ENA]
¡û
>W1710564147
FOQG01000019
Actinomycetota
Nocardioides psychrotolerans [FOQG]
62585
62511
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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