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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370893 (51 seq.)
>C171128300
LT578417
Cyanobacteriota
Cyanobium sp. NIES-981 [LT578417]
2693611
2693682
+
Thr
CGT
-
¡û
>C016966
CP000554
Cyanobacteriota
Prochlorococcus marinus str. MIT 9303 [CP000554]
410368
410294
-
Thr
CGT
[Ensembl]
¡û
>WENV180056800
MPLW02059570
[MPLW] marine metagenome; 110 m water sample filtered on 0.2 um supor filter
413
485
+
Thr
CGT
[ENA]
¡û
>WENV180069574
MPLZ02116995
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
1107
1033
-
Thr
CGT
[ENA]
¡û
>WENV180080751
MPMC02048155
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
415
341
-
Thr
CGT
[ENA]
¡û
>WENV180114348
OAPS01005695
[OAPS] marine metagenome; sea water
827
898
+
Thr
CGT
[ENA]
¡û
>WENV180689988
OCZB010381013
[OCZB] metagenome; Oyster Gut Contents
246
175
-
Thr
CGT
[ENA]
¡û
>WENV181377168
OFRA01003361
[OFRA] wastewater metagenome; Lake Maggiore Verbania
2527
2456
-
Thr
CGT
[ENA]
¡û
>WENV181386848
OFRL01018404
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
726
655
-
Thr
CGT
[ENA]
¡û
>W08011057
ABSE01000018
Cyanobacteriota
Cyanobium sp. PCC 7001 [ABSE]
221310
221239
-
Thr
CGT
[ENA]
¡û
>WENV170173506
CEOQ01218194
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
301
230
-
Thr
CGT
[ENA]
¡û
>WENV170346549
CETG01049498
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
160
89
-
Thr
CGT
[ENA]
¡û
>WENV170352647
CETH01290720
[CETH] marine metagenome genome assembly TARA_122_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
126
53
-
Thr
CGT
[ENA]
¡û
>WENV170909468
MDTE01078676
[MDTE] marine metagenome; seawater
12574
12645
+
Thr
CGT
[ENA]
¡û
>C191165417
CP039373
Cyanobacteriota
Synechococcus sp. CB0101 [CP039373]
1311995
1312066
+
Thr
CGT
-
¡û
>W1910155418
BIMP01000001
Cyanobacteriota
cyanobiont of Ornithocercus magnificus OmCyn01 [BIMP]
126850
126922
+
Thr
CGT
[ENA]
¡û
>W1911177052
NQLA01000051
Cyanobacteriota
Synechococcus sp. LL [NQLA]
4089
4160
+
Thr
CGT
[ENA]
¡û
>W1810387020
PXVC01000013
Cyanobacteriota
Synechococcus lacustris Tous [PXVC]
2687
2616
-
Thr
CGT
[ENA]
¡û
>W1810519385
QCFA01000004
Cyanobacteriota
Prochlorococcus sp. AG-363-A15 [QCFA]
46611
46682
+
Thr
CGT
[ENA]
¡û
>W1810519435
QCFB01000040
Cyanobacteriota
Prochlorococcus sp. AG-363-A16 [QCFB]
3055
3127
+
Thr
CGT
[ENA]
¡û
>W1810519644
QCFI01000044
Cyanobacteriota
Prochlorococcus sp. AG-363-C20 [QCFI]
7732
7804
+
Thr
CGT
[ENA]
¡û
>W1810519750
QCFN01000017
Cyanobacteriota
Prochlorococcus sp. AG-363-J23 [QCFN]
13289
13362
+
Thr
CGT
[ENA]
¡û
>W1810519966
QCFX01000005
Cyanobacteriota
Prochlorococcus sp. AG-363-N20 [QCFX]
35175
35246
+
Thr
CGT
[ENA]
¡û
>W1810520102
QCGC01000002
Cyanobacteriota
Prochlorococcus sp. AG-363-P01 [QCGC]
63871
63943
+
Thr
CGT
[ENA]
¡û
>W1810520197
QCGF01000009
Cyanobacteriota
Prochlorococcus sp. AG-363-P15 [QCGF]
1653
1725
+
Thr
CGT
[ENA]
¡û
>W1810522663
QCJK01000034
Cyanobacteriota
Prochlorococcus sp. AG-409-B05 [QCJK]
88
17
-
Thr
CGT
[ENA]
¡û
>W1810522697
QCJM01000004
Cyanobacteriota
Prochlorococcus sp. AG-409-B13 [QCJM]
110
38
-
Thr
CGT
[ENA]
¡û
>W1810522924
QCJW01000011
Cyanobacteriota
Prochlorococcus sp. AG-409-G20 [QCJW]
61009
61080
+
Thr
CGT
[ENA]
¡û
>W1810522963
QCJY01000003
Cyanobacteriota
Prochlorococcus sp. AG-409-I21 [QCJY]
12836
12909
+
Thr
CGT
[ENA]
¡û
>W1810522991
QCKA01000004
Cyanobacteriota
Prochlorococcus sp. AG-409-J11 [QCKA]
28845
28918
+
Thr
CGT
[ENA]
¡û
>W1810523024
QCKB01000005
Cyanobacteriota
Prochlorococcus sp. AG-409-J16 [QCKB]
38408
38337
-
Thr
CGT
[ENA]
¡û
>W1810523074
QCKC01000036
Cyanobacteriota
Prochlorococcus sp. AG-409-J19 [QCKC]
2053
2124
+
Thr
CGT
[ENA]
¡û
>W1810523128
QCKF01000001
Cyanobacteriota
Prochlorococcus sp. AG-409-L14 [QCKF]
130374
130447
+
Thr
CGT
[ENA]
¡û
>W1810523396
QCKN01000022
Cyanobacteriota
Prochlorococcus sp. AG-409-P03 [QCKN]
9229
9300
+
Thr
CGT
[ENA]
¡û
>W1810523857
QCLF01000066
Cyanobacteriota
Prochlorococcus sp. AG-412-L10 [QCLF]
2992
3066
+
Thr
CGT
[ENA]
¡û
>W1810527743
QCRR01000031
Cyanobacteriota
Prochlorococcus sp. AG-463-F02 [QCRR]
2961
3035
+
Thr
CGT
[ENA]
¡û
>W1810527834
QCRW01000019
Cyanobacteriota
Prochlorococcus sp. AG-463-N15 [QCRW]
1989
1918
-
Thr
CGT
[ENA]
¡û
>W1810527857
QCRX01000015
Cyanobacteriota
Prochlorococcus sp. AG-463-P14 [QCRX]
14933
14861
-
Thr
CGT
[ENA]
¡û
>WENV028779
AACY021144986
Marine microbial communities from Global Ocean Sampling (GOS)
284
358
+
Thr
CGT
[ENA]
>W2010088353
BIMP01000001
Cyanobacteriota
cyanobiont of Ornithocercus magnificus OmCyn01 [BIMP]
126850
126922
+
Thr
CGT
[ENA]
¡û
>W2011032539
NQLA01000051
Cyanobacteriota
Synechococcus sp. LL [NQLA]
4089
4160
+
Thr
CGT
[ENA]
¡û
>W2110641579
JAHRXJ010000001
Cyanobacteriota
Synechococcus sp. HK05 [JAHRXJ]
2051
1980
-
Thr
CGT
[ENA]
¡û
>C211132864
CP060396
Cyanobacteriota
Synechococcus sp. CBW1006 [CP060396]
242094
242165
+
Thr
CGT
-
¡û
>C211132956
CP060398
Cyanobacteriota
Synechococcus sp. CBW1002 [CP060398]
259056
259127
+
Thr
CGT
-
¡û
>C211324866
CP073761
Cyanobacteriota
Cyanobium sp. M30B3 [CP073761]
684599
684528
-
Thr
CGT
-
¡û
>C241043034
CP035632
Cyanobacteriota
Synechococcus sp. RSCCF101 [CP035632]
2781214
2781143
-
Thr
CGT
-
¡û
>W10120547
ADXL01000075
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
3626
3697
+
Thr
CGT
[ENA]
¡û
>C241348667
CP139301
Cyanobacteriota
Prochlorococcus sp. MIT 1307 [CP139301]
1586850
1586779
-
Thr
CGT
-
¡û
>C241348704
CP139302
Cyanobacteriota
Prochlorococcus sp. MIT 1300 [CP139302]
1521326
1521254
-
Thr
CGT
-
¡û
>C241348778
CP139304
Cyanobacteriota
Prochlorococcus sp. MIT 1341 [CP139304]
1493963
1493892
-
Thr
CGT
-
¡û
>W11127291
ADXL01000075
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
3626
3697
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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