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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370950 (58 seq.)
>W1710866377
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
523365
523291
-
Lys
TTT
[ENA]
¡û
>W1710871890
LMLO01000018
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
98084
98010
-
Lys
TTT
[ENA]
¡û
>W1710878243
LMQU01000002
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
65562
65636
+
Lys
TTT
[ENA]
¡û
>W1711166985
LVVY01000094
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
71956
72030
+
Lys
TTT
[ENA]
¡û
>W1711385855
MEET01000004
Alphaproteobacteria
Pelagibacterium sp. SCN 63-126 [MEET]
249876
249950
+
Lys
TTT
[ENA]
¡û
>W1711385908
MEEU01000002
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
47310
47236
-
Lys
TTT
[ENA]
¡û
>W1711385933
MEEU01000021
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
17123
17197
+
Lys
TTT
[ENA]
¡û
>W1711385995
MEEV01000014
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
59811
59885
+
Lys
TTT
[ENA]
¡û
>W1711386032
MEEV01000031
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
23346
23272
-
Lys
TTT
[ENA]
¡û
>W1711387093
MEGG01000039
Alphaproteobacteria
Pelagibacterium sp. SCN 63-17 [MEGG]
24552
24626
+
Lys
TTT
[ENA]
¡û
>W1711504821
MKUY01000003
Alphaproteobacteria
Devosia sp. 63-57 [MKUY]
249888
249962
+
Lys
TTT
[ENA]
¡û
>WENV183727145
PJTO01007057
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
1239
1165
-
Lys
TTT
[ENA]
¡û
>WENV183728607
PJTQ01000186
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
5260
5334
+
Lys
TTT
[ENA]
¡û
>WENV183729948
PJTR01000231
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
52680
52606
-
Lys
TTT
[ENA]
¡û
>WENV183731727
PJTT01000124
[PJTT] soil metagenome; Soil (2) enriched on wood chips
77110
77036
-
Lys
TTT
[ENA]
¡û
>WENV183732459
PJTX01000521
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
410
336
-
Lys
TTT
[ENA]
¡û
>WENV183734101
PJTZ01000059
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
57052
57126
+
Lys
TTT
[ENA]
¡û
>WENV183737093
PJUD01000406
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1388
1462
+
Lys
TTT
[ENA]
¡û
>WENV183738147
PJUD01091759
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
79
5
-
Lys
TTT
[ENA]
¡û
>WENV183739813
PJUF01000020
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
161514
161440
-
Lys
TTT
[ENA]
¡û
>WENV183740305
PJUF01001075
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
767
693
-
Lys
TTT
[ENA]
¡û
>WENV183741774
PJUG01009152
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
649
723
+
Lys
TTT
[ENA]
¡û
>WENV183742922
PJUI01011129
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
198
272
+
Lys
TTT
[ENA]
¡û
>WENV183743537
PJUJ01004666
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
356
282
-
Lys
TTT
[ENA]
¡û
>WENV183744891
PJUL01000555
[PJUL] feces metagenome; Chicken feces enriched on filter paper
19011
19085
+
Lys
TTT
[ENA]
¡û
>WENV183745128
PJUL01002813
[PJUL] feces metagenome; Chicken feces enriched on filter paper
717
791
+
Lys
TTT
[ENA]
¡û
>WENV170152260
CEOE01063593
[CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
232
306
+
Lys
TTT
[ENA]
¡û
>C181139147
CP026747
Alphaproteobacteria
Devosia sp. I507 [CP026747]
3490640
3490566
-
Lys
TTT
-
¡û
>W141814359
JQGC01000010
Alphaproteobacteria
Devosia riboflavina [JQGC]
11280
11354
+
Lys
TTT
[ENA]
¡û
>W1810426197
PYVZ01000004
Alphaproteobacteria
Devosia indica IO390501 [PYVZ]
145772
145698
-
Lys
TTT
[ENA]
¡û
>W1810576898
QENV01000002
Alphaproteobacteria
Devosia sp. PTEAB7WZ [QENV]
522464
522390
-
Lys
TTT
[ENA]
¡û
>W2010726315
JACIEW010000001
Alphaproteobacteria
Devosia subaequoris DSM 23447 [JACIEW]
42457
42383
-
Lys
TTT
[ENA]
¡û
>W2011513128
RZNJ01000002
Alphaproteobacteria
Arsenicitalea aurantiaca 42-50 [RZNJ]
505949
505875
-
Lys
TTT
[ENA]
¡û
>W2011958287
UZWD01000043
Alphaproteobacteria
Devosia sp. M6-77 [UZWD]
66627
66701
+
Lys
TTT
[ENA]
¡û
>W2012425655
WQRF01000001
Alphaproteobacteria
Devosia marina L53-10-65 [WQRF]
958001
958075
+
Lys
TTT
[ENA]
¡û
>W2110050141
BMZE01000001
Alphaproteobacteria
Devosia pacifica KCTC 32437 [BMZE]
232391
232317
-
Lys
TTT
[ENA]
¡û
>W2110202909
JACDXV010000001
Alphaproteobacteria
Devosia sp. CC-YST696 [JACDXV]
408658
408732
+
Lys
TTT
[ENA]
¡û
>W2110287222
JACYFU010000001
Alphaproteobacteria
Devosia sp. PTR5 [JACYFU]
999055
999129
+
Lys
TTT
[ENA]
¡û
>W2110423847
JAEKMH010000001
Alphaproteobacteria
Devosia sediminis MSA67 [JAEKMH]
1099007
1098933
-
Lys
TTT
[ENA]
¡û
>W2110427738
JAEMEB010000001
Alphaproteobacteria
Devosia sp. MC521 [JAEMEB]
197283
197357
+
Lys
TTT
[ENA]
¡û
>W2110428981
JAEMNZ010000011
Alphaproteobacteria
Devosia sp. MC532 [JAEMNZ]
129390
129316
-
Lys
TTT
[ENA]
¡û
>W2110431635
JAENGO010000001
Alphaproteobacteria
Devosia sp. WQ 349K1 [JAENGO]
610407
610481
+
Lys
TTT
[ENA]
¡û
>W2110581067
JAGXTP010000001
Alphaproteobacteria
Devosia sp. BSSL-BM10 [JAGXTP]
1664197
1664271
+
Lys
TTT
[ENA]
¡û
>C211381444
CP080590
Alphaproteobacteria
Devosia sp. SCS-3 [CP080590]
1904874
1904948
+
Lys
TTT
-
¡û
>C231483197
CP104002
Alphaproteobacteria
Devosia sp. SD17-2 [CP104002]
2171144
2171070
-
Lys
TTT
-
¡û
>C231483389
CP104007
Alphaproteobacteria
Devosia sp. FJ2-5-3 [CP104007]
2073488
2073414
-
Lys
TTT
-
¡û
>C241180034
CP059902
Alphaproteobacteria
Devosia sp. MC521 [CP059902]
2098205
2098279
+
Lys
TTT
-
¡û
>C241276364
CP127251
Alphaproteobacteria
Devosia sp. YIM 151766 [CP127251]
1418290
1418216
-
Lys
TTT
-
¡û
>W2310024508
BSNS01000024
Alphaproteobacteria
Devosia nitrariae NBRC 112416 [BSNS]
293457
293383
-
Lys
TTT
[ENA]
¡û
>W1511541928
JZEX01000058
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
915
841
-
Lys
TTT
[ENA]
¡û
>W1511541970
JZEY01000054
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
1562297
1562371
+
Lys
TTT
[ENA]
¡û
>W1511568652
LAJG01000014
Alphaproteobacteria
Devosia soli GH2-10 [LAJG]
57170
57244
+
Lys
TTT
[ENA]
¡û
>W1511574006
LANK01000023
Alphaproteobacteria
Devosia subaequoris HST3-14 [LANK]
55524
55598
+
Lys
TTT
[ENA]
¡û
>W1610728723
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
523365
523291
-
Lys
TTT
[ENA]
¡û
>W1610734236
LMLO01000018
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
98084
98010
-
Lys
TTT
[ENA]
¡û
>W1610740589
LMQU01000002
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
65562
65636
+
Lys
TTT
[ENA]
¡û
>W1610977525
LVVY01000094
Alphaproteobacteria
Devosia elaeis S37 [LVVY]
71956
72030
+
Lys
TTT
[ENA]
¡û
>W1710609381
FXWK01000001
Alphaproteobacteria
Devosia lucknowensis [FXWK]
1247889
1247963
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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