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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370955 (80 seq.)
>W1710785600
LJHZ01000096
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
77392
77466
+
Val
CAC
[ENA]
¡û
>W1710856836
LLZR01000003
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
181637
181711
+
Val
CAC
[ENA]
¡û
>W1710869730
LMJY01000016
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
89328
89402
+
Val
CAC
[ENA]
¡û
>W1711386362
MEFG01000017
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
93656
93582
-
Val
CAC
[ENA]
¡û
>W131241116
BARE01000007
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
179556
179630
+
Val
CAC
[ENA]
¡û
>W1711434810
MINO01000010
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
93316
93390
+
Val
CAC
[ENA]
¡û
>W1711506369
MKWI01000023
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
52313
52239
-
Val
CAC
[ENA]
¡û
>W1711506411
MKWJ01000023
Alphaproteobacteria
Sphingomonas sp. 67-41 [MKWJ]
257240
257166
-
Val
CAC
[ENA]
¡û
>W1712049840
NFUR01000002
Alphaproteobacteria
Sphingomonas sp. IBVSS2 [NFUR]
614288
614362
+
Val
CAC
[ENA]
¡û
>W1712076961
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
1167214
1167288
+
Val
CAC
[ENA]
¡û
>WENV180039162
LLBY010030570
[LLBY] soil metagenome; soil from tomato rhizosphere
2727
2801
+
Val
CAC
[ENA]
¡û
>WENV180100139
OAOK01000035
[OAOK] sediment metagenome; sediment
48361
48287
-
Val
CAC
[ENA]
¡û
>WENV180100402
OAON01000657
[OAON] sediment metagenome; sediment
1517
1443
-
Val
CAC
[ENA]
¡û
>WENV180355261
OBNH01000107
[OBNH] sediment metagenome; sediment
11379
11305
-
Val
CAC
[ENA]
¡û
>WENV180355522
OBNI01000211
[OBNI] sediment metagenome; sediment
13793
13867
+
Val
CAC
[ENA]
¡û
>WENV180355974
OBNJ01012425
[OBNJ] sediment metagenome; sediment
420
346
-
Val
CAC
[ENA]
¡û
>WENV180356230
OBNK01002371
[OBNK] sediment metagenome; sediment
1072
1146
+
Val
CAC
[ENA]
¡û
>WENV181164675
OEIR01299579
[OEIR] soil metagenome; soil
144
70
-
Val
CAC
[ENA]
¡û
>WENV181381830
OFRF01015339
[OFRF] wastewater metagenome; Exp Tend CN 50WW
38
112
+
Val
CAC
[ENA]
¡û
>WENV183733402
PJTY01001664
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
572
498
-
Val
CAC
[ENA]
¡û
>WENV183733894
PJTZ01000001
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
1120025
1120099
+
Val
CAC
[ENA]
¡û
>WENV183737786
PJUD01033251
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
386
460
+
Val
CAC
[ENA]
¡û
>WENV183743729
PJUJ01032322
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
166
240
+
Val
CAC
[ENA]
¡û
>WENV183744818
PJUL01000297
[PJUL] feces metagenome; Chicken feces enriched on filter paper
8763
8837
+
Val
CAC
[ENA]
¡û
>WENV183749791
PPFU01213464
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3656
3582
-
Val
CAC
[ENA]
¡û
>WENV170136578
CENV01050752
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2123
2049
-
Val
CAC
[ENA]
¡û
>WENV170652021
JRYG01044054
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
536
462
-
Val
CAC
[ENA]
¡û
>WENV170992013
MWWA01408404
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
151
225
+
Val
CAC
[ENA]
¡û
>C181072101
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2685632
2685706
+
Val
CAC
-
¡û
>C191144157
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
5117400
5117474
+
Val
CAC
-
¡û
>W141564456
JIAU01000004
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
286904
286978
+
Val
CAC
[ENA]
¡û
>W141779086
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
811090
811164
+
Val
CAC
[ENA]
¡û
>W1910007003
BBQY01000014
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
151576
151650
+
Val
CAC
[ENA]
¡û
>W1910199288
FBVW01000014
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
126439
126513
+
Val
CAC
[ENA]
¡û
>W1810390290
PXYI01000004
Alphaproteobacteria
Sphingomonas deserti GL-C-18 [PXYI]
554948
555022
+
Val
CAC
[ENA]
¡û
>W1810400863
PYGL01000003
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
214203
214129
-
Val
CAC
[ENA]
¡û
>W1810577291
QEOD01000002
Alphaproteobacteria
Sphingomonas sp. CF311 [QEOD]
332124
332198
+
Val
CAC
[ENA]
¡û
>W1810725233
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
33505
33431
-
Val
CAC
[ENA]
¡û
>WENV029256
AACY021184136
Marine microbial communities from Global Ocean Sampling (GOS)
442
368
-
Val
CAC
[ENA]
>W2010320970
CACSJO010000005
Alphaproteobacteria
Novosphingobium sp. 18050 [CACSJO]
106342
106416
+
Val
CAC
[ENA]
¡û
>W2010321429
CACSJU010000042
Alphaproteobacteria
Novosphingobium sp. 18052 [CACSJU]
12257
12331
+
Val
CAC
[ENA]
¡û
>W2010526889
JAANYY010000002
Alphaproteobacteria
Sphingopyxis sp. Z10-6 [JAANYY]
1178807
1178733
-
Val
CAC
[ENA]
¡û
>W2010560266
JAASQV010000001
Alphaproteobacteria
Sphingomonas leidyi DSM 4733 [JAASQV]
772447
772521
+
Val
CAC
[ENA]
¡û
>W2010593122
JABEPR010000004
Alphaproteobacteria
Sphingomonas sp. ID1715 [JABEPR]
82252
82326
+
Val
CAC
[ENA]
¡û
>W2010674379
JACCFG010000001
Alphaproteobacteria
Sphingomonas sp. R-74633 [JACCFG]
341735
341809
+
Val
CAC
[ENA]
¡û
>W2010675546
JACCGB010000001
Alphaproteobacteria
Novosphingobium sp. B11G3A [JACCGB]
486266
486192
-
Val
CAC
[ENA]
¡û
>W2010706134
JACHJZ010000001
Alphaproteobacteria
Sphingobium sp. B12D2A [JACHJZ]
1208317
1208243
-
Val
CAC
[ENA]
¡û
>W2010706154
JACHKA010000001
Alphaproteobacteria
Sphingobium sp. B1D3A [JACHKA]
1776766
1776840
+
Val
CAC
[ENA]
¡û
>W2010706227
JACHKB010000001
Alphaproteobacteria
Sphingobium sp. B1D3B [JACHKB]
2260658
2260584
-
Val
CAC
[ENA]
¡û
>W2010706285
JACHKC010000001
Alphaproteobacteria
Sphingobium sp. B1D3D [JACHKC]
493357
493283
-
Val
CAC
[ENA]
¡û
>W2010708504
JACHLN010000002
Alphaproteobacteria
Sphingomonas kyeonggiensis S00224 [JACHLN]
1116013
1115939
-
Val
CAC
[ENA]
¡û
>W2010723869
JACICY010000001
Alphaproteobacteria
Novosphingobium hassiacum DSM 14552 [JACICY]
461605
461679
+
Val
CAC
[ENA]
¡û
>W2010725602
JACIEH010000001
Alphaproteobacteria
Sphingomonas kyeonggiensis DSM 101806 [JACIEH]
685897
685971
+
Val
CAC
[ENA]
¡û
>W2011493733
RWJF01000001
Alphaproteobacteria
Sphingomonas sp. HMF7854 [RWJF]
2070118
2070044
-
Val
CAC
[ENA]
¡û
>W2011532275
SBKP01000003
Alphaproteobacteria
Sphingobium sp. CHR27 [SBKP]
52217
52291
+
Val
CAC
[ENA]
¡û
>W2011537682
SCMK01000003
Alphaproteobacteria
Sphingomonas sp. 1F27F7B [SCMK]
281779
281705
-
Val
CAC
[ENA]
¡û
>W2011538780
SCNF01000032
Alphaproteobacteria
Sphingomonas sp. 3F27E9-B [SCNF]
41638
41564
-
Val
CAC
[ENA]
¡û
>W2011667295
SPDV01000019
Alphaproteobacteria
Sphingomonas sp. 17J27-24 [SPDV]
44943
45017
+
Val
CAC
[ENA]
¡û
>W2011980128
VDBZ01000001
Alphaproteobacteria
Sphingobium sp. B2 [VDBZ]
1409022
1408948
-
Val
CAC
[ENA]
¡û
>W2012045934
VIUU01000007
Alphaproteobacteria
Sphingobium sp. AEW010 [VIUU]
40736
40662
-
Val
CAC
[ENA]
¡û
>W2012046091
VIUX01000007
Alphaproteobacteria
Sphingobium sp. AEW013 [VIUX]
152863
152937
+
Val
CAC
[ENA]
¡û
>W2012046140
VIUY01000007
Alphaproteobacteria
Sphingobium sp. AEW001 [VIUY]
152863
152937
+
Val
CAC
[ENA]
¡û
>W2012106728
VOQQ01000001
Alphaproteobacteria
Sphingosinicella ginsenosidimutans BS-11 [VOQQ]
2999673
2999599
-
Val
CAC
[ENA]
¡û
>W2110063506
BOPV01000001
Alphaproteobacteria
Rhodospirillales bacterium TMPK1 [BOPV]
518267
518341
+
Val
CAC
[ENA]
¡û
>W2110263384
JACTGR010000001
Alphaproteobacteria
Sphingomonas sp. JC676 [JACTGR]
391223
391297
+
Val
CAC
[ENA]
¡û
>W2110362805
JADOUC010000001
Alphaproteobacteria
Sphingobium sp. JAI105 [JADOUC]
594572
594646
+
Val
CAC
[ENA]
¡û
>W2110600963
JAHGAW010000001
Alphaproteobacteria
Sphingobium sp. H33 [JAHGAW]
472231
472157
-
Val
CAC
[ENA]
¡û
>W2110610672
JAHKKS010000004
Alphaproteobacteria
Sphingobium xanthum NL9 [JAHKKS]
288046
288120
+
Val
CAC
[ENA]
¡û
>W2110640934
JAHRGM010000001
Alphaproteobacteria
Sphingobium sp. AS12 [JAHRGM]
828514
828440
-
Val
CAC
[ENA]
¡û
>W2110689695
JAINVV010000004
Alphaproteobacteria
Sphingomonas colocasiae JCM 31229 [JAINVV]
1194831
1194905
+
Val
CAC
[ENA]
¡û
>C211346960
CP076556
Alphaproteobacteria
Sphingobium hydrophobicum PH3-15 [CP076556, CP076557]
3315742
3315668
-
Val
CAC
-
¡û
>C231385294
CP097462
Alphaproteobacteria
Sphingomonas sp. KRR8 [CP097462]
415727
415801
+
Val
CAC
-
¡û
>C231562605
CP114791
Alphaproteobacteria
Sphingomonas sp. NIBR 02145 [CP114791]
276193
276267
+
Val
CAC
-
¡û
>C241096715
CP045434
Alphaproteobacteria
Sphingomonas ginsengisoli An et al. 2013 KACC 16858 [CP045434]
902210
902136
-
Val
CAC
-
¡û
>C241138248
CP049869
Alphaproteobacteria
Sphingomonas piscis HDW15B [CP049869]
2704442
2704516
+
Val
CAC
-
¡û
>W2310025421
BSOO01000031
Alphaproteobacteria
Sphingomonas astaxanthinifaciens NBRC 102146 [BSOO]
20623
20549
-
Val
CAC
[ENA]
¡û
>C11121256
AP012222
Alphaproteobacteria
Sphingobium sp. SYK-6 [AP012222]
1755668
1755742
+
Val
CAC
[Ensembl]
¡û
>W121084347
AKIB01000107
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
43238
43164
-
Val
CAC
[ENA]
¡û
>WENV077197
AAFX01004385
Soil microbial communities from Minnesota Farm
175
101
-
Val
CAC
[ENA]
>WENV077853
AAFX01114434
Soil microbial communities from Minnesota Farm
432
358
-
Val
CAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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