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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370971 (78 seq.)
>C171057376
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
554414
554488
+
Lys
TTT
-
¡û
>C171057377
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
554525
554599
+
Lys
TTT
-
¡û
>C171057378
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
554616
554690
+
Lys
TTT
-
¡û
>WENV180698100
ODDE01033682
[ODDE] human metagenome; G_DNA_Supragingival plaque
412
486
+
Lys
TTT
[ENA]
¡û
>WENV180722160
ODGL01116138
[ODGL] human metagenome; G_DNA_Subgingival plaque
74
148
+
Lys
TTT
[ENA]
¡û
>WENV180733936
ODGZ01001457
[ODGZ] human metagenome; G_DNA_Supragingival plaque
53
127
+
Lys
TTT
[ENA]
¡û
>WENV180733937
ODGZ01001457
[ODGZ] human metagenome; G_DNA_Supragingival plaque
147
221
+
Lys
TTT
[ENA]
¡û
>WENV180734038
ODGZ01002136
[ODGZ] human metagenome; G_DNA_Supragingival plaque
7789
7863
+
Lys
TTT
[ENA]
¡û
>WENV180734427
ODGZ01008459
[ODGZ] human metagenome; G_DNA_Supragingival plaque
350
276
-
Lys
TTT
[ENA]
¡û
>WENV180734428
ODGZ01008459
[ODGZ] human metagenome; G_DNA_Supragingival plaque
256
182
-
Lys
TTT
[ENA]
¡û
>WENV180734429
ODGZ01008459
[ODGZ] human metagenome; G_DNA_Supragingival plaque
162
88
-
Lys
TTT
[ENA]
¡û
>WENV180755272
ODHU01066830
[ODHU] human metagenome; G_DNA_Supragingival plaque
148
74
-
Lys
TTT
[ENA]
¡û
>WENV180801430
ODJD01030695
[ODJD] human metagenome; G_DNA_Supragingival plaque
672
746
+
Lys
TTT
[ENA]
¡û
>WENV180834660
ODKD01087160
[ODKD] human metagenome; G_DNA_Supragingival plaque
147
221
+
Lys
TTT
[ENA]
¡û
>WENV180843994
ODKN01022983
[ODKN] human metagenome; G_DNA_Supragingival plaque
298
372
+
Lys
TTT
[ENA]
¡û
>WENV180891992
ODMQ01085679
[ODMQ] human metagenome; G_DNA_Supragingival plaque
195
121
-
Lys
TTT
[ENA]
¡û
>WENV180922412
ODTJ01003652
[ODTJ] human metagenome; G_DNA_Supragingival plaque
6832
6906
+
Lys
TTT
[ENA]
¡û
>WENV180922488
ODTJ01004757
[ODTJ] human metagenome; G_DNA_Supragingival plaque
3272
3198
-
Lys
TTT
[ENA]
¡û
>WENV180922536
ODTJ01005362
[ODTJ] human metagenome; G_DNA_Supragingival plaque
53
127
+
Lys
TTT
[ENA]
¡û
>WENV180922537
ODTJ01005362
[ODTJ] human metagenome; G_DNA_Supragingival plaque
147
221
+
Lys
TTT
[ENA]
¡û
>WENV180922538
ODTJ01005362
[ODTJ] human metagenome; G_DNA_Supragingival plaque
241
315
+
Lys
TTT
[ENA]
¡û
>WENV181019272
ODWU01001492
[ODWU] human metagenome; G_DNA_Supragingival plaque
2751
2677
-
Lys
TTT
[ENA]
¡û
>WENV181019273
ODWU01001492
[ODWU] human metagenome; G_DNA_Supragingival plaque
2658
2584
-
Lys
TTT
[ENA]
¡û
>WENV181043248
ODXU01085912
[ODXU] human metagenome; G_DNA_Buccal mucosa
239
165
-
Lys
TTT
[ENA]
¡û
>WENV181050762
ODYD01054511
[ODYD] human metagenome; G_DNA_Supragingival plaque
337
411
+
Lys
TTT
[ENA]
¡û
>WENV181050763
ODYD01054511
[ODYD] human metagenome; G_DNA_Supragingival plaque
430
504
+
Lys
TTT
[ENA]
¡û
>WENV181070159
OEAE01000352
[OEAE] human metagenome; G_DNA_Supragingival plaque
21190
21264
+
Lys
TTT
[ENA]
¡û
>WENV181070160
OEAE01000352
[OEAE] human metagenome; G_DNA_Supragingival plaque
21283
21357
+
Lys
TTT
[ENA]
¡û
>WENV181079675
OEAS01011772
[OEAS] human metagenome; G_DNA_Supragingival plaque
3940
3866
-
Lys
TTT
[ENA]
¡û
>WENV181079676
OEAS01011772
[OEAS] human metagenome; G_DNA_Supragingival plaque
3846
3772
-
Lys
TTT
[ENA]
¡û
>WENV181081668
OEAS01318143
[OEAS] human metagenome; G_DNA_Supragingival plaque
302
228
-
Lys
TTT
[ENA]
¡û
>WENV181081951
OEAS01519049
[OEAS] human metagenome; G_DNA_Supragingival plaque
90
164
+
Lys
TTT
[ENA]
¡û
>WENV181136939
OEGI01153216
[OEGI] human metagenome; G_DNA_Supragingival plaque
92
18
-
Lys
TTT
[ENA]
¡û
>WENV181146333
OEHQ01003265
[OEHQ] human metagenome; G_DNA_Supragingival plaque
148
74
-
Lys
TTT
[ENA]
¡û
>W141207894
AZOD01000004
Gammaproteobacteria
Ignatzschineria larvae DSM 13226 [AZOD]
76132
76206
+
Lys
TTT
[ENA]
¡û
>W141207895
AZOD01000004
Gammaproteobacteria
Ignatzschineria larvae DSM 13226 [AZOD]
76366
76440
+
Lys
TTT
[ENA]
¡û
>W09127404
ACKY01000128
Gammaproteobacteria
Cardiobacterium hominis ATCC 15826 [ACKY]
11752
11678
-
Lys
TTT
[ENA]
¡û
>W09127405
ACKY01000128
Gammaproteobacteria
Cardiobacterium hominis ATCC 15826 [ACKY]
11659
11585
-
Lys
TTT
[ENA]
¡û
>W1910882366
NEFF01000007
Gammaproteobacteria
Ignatzschineria sp. F8392 [NEFF]
60071
60145
+
Lys
TTT
[ENA]
¡û
>W1910882367
NEFF01000007
Gammaproteobacteria
Ignatzschineria sp. F8392 [NEFF]
60232
60306
+
Lys
TTT
[ENA]
¡û
>W1810582765
QEWQ01000006
Gammaproteobacteria
Ignatzschineria ureiclastica KCTC 22644 [QEWQ]
222402
222328
-
Lys
TTT
[ENA]
¡û
>W1810582766
QEWQ01000006
Gammaproteobacteria
Ignatzschineria ureiclastica KCTC 22644 [QEWQ]
222179
222105
-
Lys
TTT
[ENA]
¡û
>W1810582832
QEWR01000008
Gammaproteobacteria
Ignatzschineria indica KCTC 22643 [QEWR]
37247
37173
-
Lys
TTT
[ENA]
¡û
>W1810582833
QEWR01000008
Gammaproteobacteria
Ignatzschineria indica KCTC 22643 [QEWR]
37085
37011
-
Lys
TTT
[ENA]
¡û
>W1810582870
QEWS01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU61 [QEWS]
37219
37145
-
Lys
TTT
[ENA]
¡û
>W1810582871
QEWS01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU61 [QEWS]
37065
36991
-
Lys
TTT
[ENA]
¡û
>W1810582929
QEWT01000010
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU60 [QEWT]
37076
37002
-
Lys
TTT
[ENA]
¡û
>W1810582930
QEWT01000010
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU60 [QEWT]
36922
36848
-
Lys
TTT
[ENA]
¡û
>W1810582977
QEWU01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU59 [QEWU]
61596
61670
+
Lys
TTT
[ENA]
¡û
>W1810582978
QEWU01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU59 [QEWU]
61750
61824
+
Lys
TTT
[ENA]
¡û
>W1810583031
QEWV01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU58 [QEWV]
37219
37145
-
Lys
TTT
[ENA]
¡û
>W1810583032
QEWV01000006
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU58 [QEWV]
37065
36991
-
Lys
TTT
[ENA]
¡û
>W1810583085
QEWW01000005
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU57 [QEWW]
36699
36625
-
Lys
TTT
[ENA]
¡û
>W1810583086
QEWW01000005
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU57 [QEWW]
36545
36471
-
Lys
TTT
[ENA]
¡û
>W2010950604
NEFF01000007
Gammaproteobacteria
Ignatzschineria sp. F8392 [NEFF]
60071
60145
+
Lys
TTT
[ENA]
¡û
>W2010950605
NEFF01000007
Gammaproteobacteria
Ignatzschineria sp. F8392 [NEFF]
60232
60306
+
Lys
TTT
[ENA]
¡û
>W2011844416
UHIA01000003
Gammaproteobacteria
Suttonella indologenes NCTC10717 [UHIA]
32463
32537
+
Lys
TTT
[ENA]
¡û
>W2011844417
UHIA01000003
Gammaproteobacteria
Suttonella indologenes NCTC10717 [UHIA]
32561
32635
+
Lys
TTT
[ENA]
¡û
>W2110048451
BMXZ01000006
Gammaproteobacteria
Ignatzschineria indica KCTC 22643 [BMXZ]
59712
59786
+
Lys
TTT
[ENA]
¡û
>W2110048452
BMXZ01000006
Gammaproteobacteria
Ignatzschineria indica KCTC 22643 [BMXZ]
59874
59948
+
Lys
TTT
[ENA]
¡û
>W2110048489
BMYA01000004
Gammaproteobacteria
Ignatzschineria ureiclastica KCTC 22644 [BMYA]
67042
67116
+
Lys
TTT
[ENA]
¡û
>W2110048490
BMYA01000004
Gammaproteobacteria
Ignatzschineria ureiclastica KCTC 22644 [BMYA]
67265
67339
+
Lys
TTT
[ENA]
¡û
>W2110284387
JACXLD010000006
Gammaproteobacteria
Spongiibacter sp. KMU-158 [JACXLD]
145178
145252
+
Lys
TTT
[ENA]
¡û
>C211406999
CP084115
Gammaproteobacteria
Cobetia amphilecti N-80 [CP084115]
3552900
3552826
-
Lys
TTT
-
¡û
>C211407000
CP084115
Gammaproteobacteria
Cobetia amphilecti N-80 [CP084115]
3552789
3552715
-
Lys
TTT
-
¡û
>C211407001
CP084115
Gammaproteobacteria
Cobetia amphilecti N-80 [CP084115]
3552698
3552624
-
Lys
TTT
-
¡û
>C211407002
CP084115
Gammaproteobacteria
Cobetia amphilecti N-80 [CP084115]
3552607
3552533
-
Lys
TTT
-
¡û
>C231333350
CP093379
Gammaproteobacteria
Ignatzschineria sp. HR5S32 [CP093379]
2507213
2507139
-
Lys
TTT
-
¡û
>C231333351
CP093379
Gammaproteobacteria
Ignatzschineria sp. HR5S32 [CP093379]
2506987
2506913
-
Lys
TTT
-
¡û
>C241114847
CP047025
Gammaproteobacteria
Cobetia sp. L2A1 [CP047025]
3528805
3528731
-
Lys
TTT
-
¡û
>C241114848
CP047025
Gammaproteobacteria
Cobetia sp. L2A1 [CP047025]
3528693
3528619
-
Lys
TTT
-
¡û
>C241329204
CP136695
Gammaproteobacteria
Cobetia amphilecti CI.11.F.A3 [CP136695]
3876870
3876796
-
Lys
TTT
-
¡û
>C241329205
CP136695
Gammaproteobacteria
Cobetia amphilecti CI.11.F.A3 [CP136695]
3876759
3876685
-
Lys
TTT
-
¡û
>C241329206
CP136695
Gammaproteobacteria
Cobetia amphilecti CI.11.F.A3 [CP136695]
3876668
3876594
-
Lys
TTT
-
¡û
>C241369628
CP142020
Gammaproteobacteria
Cobetia sp. D5 [CP142020]
3621623
3621549
-
Lys
TTT
-
¡û
>C241369629
CP142020
Gammaproteobacteria
Cobetia sp. D5 [CP142020]
3621512
3621438
-
Lys
TTT
-
¡û
>C241369630
CP142020
Gammaproteobacteria
Cobetia sp. D5 [CP142020]
3621421
3621347
-
Lys
TTT
-
¡û
>W1710581132
FPJW01000003
Gammaproteobacteria
Marinospirillum alkaliphilum DSM 21637 [FPJW]
119240
119314
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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