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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371080 (74 seq.)
>W1710872860
LMMI01000005
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
73161
73235
+
Glu
CTC
[ENA]
¡û
>W1710872968
LMMK01000020
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
192888
192814
-
Glu
CTC
[ENA]
¡û
>W1710873010
LMML01000027
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
189748
189674
-
Glu
CTC
[ENA]
¡û
>W1710873453
LMMU01000007
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
190810
190884
+
Glu
CTC
[ENA]
¡û
>W1710873531
LMMW01000002
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
138065
138139
+
Glu
CTC
[ENA]
¡û
>W1710873564
LMMW01000034
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
219393
219319
-
Glu
CTC
[ENA]
¡û
>W1710873614
LMMX01000037
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
238642
238568
-
Glu
CTC
[ENA]
¡û
>W1710873677
LMMZ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
105595
105521
-
Glu
CTC
[ENA]
¡û
>W1710873863
LMND01000001
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
255377
255303
-
Glu
CTC
[ENA]
¡û
>W1710873942
LMNE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
414898
414972
+
Glu
CTC
[ENA]
¡û
>W1710874030
LMNG01000030
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
289298
289224
-
Glu
CTC
[ENA]
¡û
>W1710874147
LMNJ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
55273
55199
-
Glu
CTC
[ENA]
¡û
>W1710874240
LMNL01000002
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
54969
54895
-
Glu
CTC
[ENA]
¡û
>W1710874654
LMNU01000012
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
405912
405838
-
Glu
CTC
[ENA]
¡û
>W1710877777
LMQK01000001
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
254821
254747
-
Glu
CTC
[ENA]
¡û
>W1710878530
LMRA01000012
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
227487
227561
+
Glu
CTC
[ENA]
¡û
>W1710878627
LMRC01000023
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
5778
5704
-
Glu
CTC
[ENA]
¡û
>W1710878721
LMRE01000023
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
290276
290202
-
Glu
CTC
[ENA]
¡û
>W1710879183
LMRM01000010
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
41017
41091
+
Glu
CTC
[ENA]
¡û
>W1711073769
LSIX01000422
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
7630
7704
+
Glu
CTC
[ENA]
¡û
>WENV170577812
FSSH01001522
[FSSH] freshwater metagenome; drinking water
10549
10623
+
Glu
CTC
[ENA]
¡û
>C181175629
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
927024
927098
+
Glu
CTC
-
¡û
>W1810057194
PDHT01000005
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
45884
45958
+
Glu
CTC
[ENA]
¡û
>W1810487214
QAYK01000008
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
165096
165022
-
Glu
CTC
[ENA]
¡û
>W1810672710
QJTP01000008
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
165045
164971
-
Glu
CTC
[ENA]
¡û
>SRA1014292
SRR023845.76084
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
259
185
-
Glu
CTC
[SRA]
>SRA1014448
SRR023845.146162
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
136
62
-
Glu
CTC
[SRA]
>SRA1014797
SRR023845.318145
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
184
110
-
Glu
CTC
[SRA]
>SRA1016539
SRR023846.551431
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
82
8
-
Glu
CTC
[SRA]
>W2010472574
JAAHTB010000019
Alphaproteobacteria
Methylobacterium sp. BTF04 [JAAHTB]
76744
76818
+
Glu
CTC
[ENA]
¡û
>W2012126522
VRUS01000170
Alphaproteobacteria
Methylobacterium sp. WL122 [VRUS]
1889
1815
-
Glu
CTC
[ENA]
¡û
>W2012126574
VRUT01000035
Alphaproteobacteria
Methylobacterium sp. WL120 [VRUT]
31615
31689
+
Glu
CTC
[ENA]
¡û
>W2012126610
VRUU01000001
Alphaproteobacteria
Methylobacterium sp. WL119 [VRUU]
3883
3809
-
Glu
CTC
[ENA]
¡û
>W2012126690
VRUV01000237
Alphaproteobacteria
Methylobacterium sp. WL116 [VRUV]
3594
3520
-
Glu
CTC
[ENA]
¡û
>W2012126737
VRUW01000056
Alphaproteobacteria
Methylobacterium sp. WL12 [VRUW]
31402
31476
+
Glu
CTC
[ENA]
¡û
>W2012126794
VRUX01000415
Alphaproteobacteria
Methylobacterium sp. WL103 [VRUX]
460
386
-
Glu
CTC
[ENA]
¡û
>W2012126830
VRUY01000083
Alphaproteobacteria
Methylobacterium sp. WL93 [VRUY]
3883
3809
-
Glu
CTC
[ENA]
¡û
>W2012126892
VRUZ01000061
Alphaproteobacteria
Methylobacterium sp. WL69 [VRUZ]
13568
13494
-
Glu
CTC
[ENA]
¡û
>W2012126957
VRVB01000001
Alphaproteobacteria
Methylobacterium sp. WL30 [VRVB]
3874
3800
-
Glu
CTC
[ENA]
¡û
>W2012127044
VRVC01000151
Alphaproteobacteria
Methylobacterium sp. WL19 [VRVC]
6120
6194
+
Glu
CTC
[ENA]
¡û
>W2012127173
VRVF01000039
Alphaproteobacteria
Methylobacterium sp. WL8 [VRVF]
14958
14884
-
Glu
CTC
[ENA]
¡û
>W2012127252
VRVH01000019
Alphaproteobacteria
Methylobacterium sp. WL6 [VRVH]
39102
39028
-
Glu
CTC
[ENA]
¡û
>W2012221283
VZZK01000008
Alphaproteobacteria
Methylobacterium soli YIM 48816 [VZZK]
42780
42854
+
Glu
CTC
[ENA]
¡û
>C201203434
CP047607
Alphaproteobacteria
Methylobacterium sp. NI91 [CP047607]
963586
963660
+
Glu
CTC
-
¡û
>C201203490
CP047608
Alphaproteobacteria
Methylobacterium sp. CLZ [CP047608]
963576
963650
+
Glu
CTC
-
¡û
>C231252055
CP088247
Alphaproteobacteria
Methylorubrum sp. B1-46 [CP088247]
1009463
1009537
+
Glu
CTC
-
¡û
>C231516237
CP107532
Alphaproteobacteria
Methylobacterium sp. FF17 [CP107532]
5716485
5716559
+
Glu
CTC
-
¡û
>W2310012732
BPQD01000003
Alphaproteobacteria
Methylobacterium adhaesivum DSM 17169 [BPQD]
294068
294142
+
Glu
CTC
[ENA]
¡û
>W2310012891
BPQG01000049
Alphaproteobacteria
Methylobacterium cerastii DSM 23679 [BPQG]
31464
31538
+
Glu
CTC
[ENA]
¡û
>W2310013135
BPQL01000172
Alphaproteobacteria
Methylobacterium goesingense DSM 21331 [BPQL]
832
758
-
Glu
CTC
[ENA]
¡û
>W2310013231
BPQO01000001
Alphaproteobacteria
Methylobacterium hispanicum DSM 16372 [BPQO]
204847
204773
-
Glu
CTC
[ENA]
¡û
>W2310013704
BPQY01000101
Alphaproteobacteria
Methylobacterium soli KCTC 22810 [BPQY]
16957
16883
-
Glu
CTC
[ENA]
¡û
>W2310013883
BPRC01000009
Alphaproteobacteria
Methylorubrum aminovorans NBRC 15686 [BPRC]
223097
223171
+
Glu
CTC
[ENA]
¡û
>W1610735206
LMMI01000005
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
73161
73235
+
Glu
CTC
[ENA]
¡û
>W1610735314
LMMK01000020
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
192888
192814
-
Glu
CTC
[ENA]
¡û
>W1610735356
LMML01000027
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
189748
189674
-
Glu
CTC
[ENA]
¡û
>W1610735799
LMMU01000007
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
190810
190884
+
Glu
CTC
[ENA]
¡û
>W1610735877
LMMW01000002
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
138065
138139
+
Glu
CTC
[ENA]
¡û
>W1610735910
LMMW01000034
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
219393
219319
-
Glu
CTC
[ENA]
¡û
>W1610735960
LMMX01000037
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
238642
238568
-
Glu
CTC
[ENA]
¡û
>W1610736023
LMMZ01000005
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
105595
105521
-
Glu
CTC
[ENA]
¡û
>W1610736209
LMND01000001
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
255377
255303
-
Glu
CTC
[ENA]
¡û
>W1610736288
LMNE01000045
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
414898
414972
+
Glu
CTC
[ENA]
¡û
>W1610736376
LMNG01000030
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
289298
289224
-
Glu
CTC
[ENA]
¡û
>W1610736493
LMNJ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
55273
55199
-
Glu
CTC
[ENA]
¡û
>W1610736586
LMNL01000002
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
54969
54895
-
Glu
CTC
[ENA]
¡û
>W1610737000
LMNU01000012
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
405912
405838
-
Glu
CTC
[ENA]
¡û
>W1610740123
LMQK01000001
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
254821
254747
-
Glu
CTC
[ENA]
¡û
>W1610740876
LMRA01000012
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
227487
227561
+
Glu
CTC
[ENA]
¡û
>W1610740973
LMRC01000023
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
5778
5704
-
Glu
CTC
[ENA]
¡û
>W1610741067
LMRE01000023
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
290276
290202
-
Glu
CTC
[ENA]
¡û
>W1610741529
LMRM01000010
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
41017
41091
+
Glu
CTC
[ENA]
¡û
>W1610913074
LSIX01000422
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
7630
7704
+
Glu
CTC
[ENA]
¡û
>W1710563181
FOPM01000010
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
11248
11174
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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