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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371094 (53 seq.)
>W1710858001
LMAR01000001
Alphaproteobacteria
Bosea thiooxidans [LMAR]
339244
339318
+
Glu
TTC
[ENA]
¡û
>W1710869510
LMJU01000001
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
328845
328771
-
Glu
TTC
[ENA]
¡û
>W1710869655
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
925928
925854
-
Glu
TTC
[ENA]
¡û
>W1711502385
MKSQ01000014
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
78332
78406
+
Glu
TTC
[ENA]
¡û
>WENV180020529
FTCZ01005548
[FTCZ] metagenome; soil
1727
1654
-
Glu
TTC
[ENA]
¡û
>WENV183729554
PJTQ01067120
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
196
270
+
Glu
TTC
[ENA]
¡û
>WENV183741216
PJUF01058654
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
353
427
+
Glu
TTC
[ENA]
¡û
>WENV170733569
LULJ01029460
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
599
525
-
Glu
TTC
[ENA]
¡û
>C181063211
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
3563399
3563325
-
Glu
TTC
-
¡û
>C191014044
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1320537
1320463
-
Glu
TTC
-
¡û
>W1910501745
FYAS01000054
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
55880
55806
-
Glu
TTC
[ENA]
¡û
>W1910635401
LNCQ01000022
Alphaproteobacteria
Bosea lupini FBZP-16 [LNCQ]
464086
464160
+
Glu
TTC
[ENA]
¡û
>W1910840132
MZXT01000010
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
902538
902464
-
Glu
TTC
[ENA]
¡û
>W1910840191
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
1899115
1899041
-
Glu
TTC
[ENA]
¡û
>W1910847632
NBDP01000003
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
885736
885662
-
Glu
TTC
[ENA]
¡û
>W1810676901
QKMI01000008
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
279806
279880
+
Glu
TTC
[ENA]
¡û
>W2010303398
CABVLT010000013
Alphaproteobacteria
Bosea sp. EC-HK365B [CABVLT]
790329
790403
+
Glu
TTC
[ENA]
¡û
>W2010309622
CABWLL010000008
Alphaproteobacteria
Bosea sp. 125 [CABWLL]
514394
514468
+
Glu
TTC
[ENA]
¡û
>W2010310851
CABWMI010000017
Alphaproteobacteria
Bosea sp. 62 [CABWMI]
241154
241080
-
Glu
TTC
[ENA]
¡û
>W2010310899
CABWMJ010000022
Alphaproteobacteria
Bosea sp. 127 [CABWMJ]
132780
132706
-
Glu
TTC
[ENA]
¡û
>W2010311303
CABWMQ010000003
Alphaproteobacteria
Bosea sp. 29B [CABWMQ]
750965
751039
+
Glu
TTC
[ENA]
¡û
>W2010421477
FYAS01000054
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
55880
55806
-
Glu
TTC
[ENA]
¡û
>W2010782329
LNCQ01000022
Alphaproteobacteria
Bosea lupini FBZP-16 [LNCQ]
464086
464160
+
Glu
TTC
[ENA]
¡û
>W2010930219
MZXT01000010
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
902538
902464
-
Glu
TTC
[ENA]
¡û
>W2010930278
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
1899115
1899041
-
Glu
TTC
[ENA]
¡û
>W2010934300
NBDP01000003
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
885736
885662
-
Glu
TTC
[ENA]
¡û
>W2011538361
SCMY01000004
Alphaproteobacteria
Rhizobiales bacterium 2SD [SCMY]
29248
29322
+
Glu
TTC
[ENA]
¡û
>W2011770433
UBNE01000025
Alphaproteobacteria
Rhizobiales bacterium [UBNE]
81196
81270
+
Glu
TTC
[ENA]
¡û
>W2011772954
UBPN01000053
Alphaproteobacteria
Rhizobiales bacterium [UBPN]
680
606
-
Glu
TTC
[ENA]
¡û
>W2011780099
UBVX01000016
Alphaproteobacteria
Rhizobiales bacterium [UBVX]
123830
123904
+
Glu
TTC
[ENA]
¡û
>W2011789630
UCEG01000025
Alphaproteobacteria
Rhizobiales bacterium [UCEG]
680
606
-
Glu
TTC
[ENA]
¡û
>W2011789934
UCEN01000030
Alphaproteobacteria
Rhizobiales bacterium [UCEN]
680
606
-
Glu
TTC
[ENA]
¡û
>W2011793586
UCHQ01000059
Alphaproteobacteria
Rhizobiales bacterium [UCHQ]
412
338
-
Glu
TTC
[ENA]
¡û
>W2011796020
UCJT01000204
Alphaproteobacteria
Rhizobiales bacterium [UCJT]
680
606
-
Glu
TTC
[ENA]
¡û
>W2011798283
UCLR01000061
Alphaproteobacteria
Rhizobiales bacterium [UCLR]
39341
39415
+
Glu
TTC
[ENA]
¡û
>W2012017081
VFMG01000001
Alphaproteobacteria
Bosea sp. AK1 [VFMG]
4519847
4519921
+
Glu
TTC
[ENA]
¡û
>W2110098506
CAJFDY010000003
Alphaproteobacteria
Bosea sp. 21B [CAJFDY]
786868
786942
+
Glu
TTC
[ENA]
¡û
>W2110098606
CAJFEA010000004
Alphaproteobacteria
Bosea sp. 46 [CAJFEA]
561777
561851
+
Glu
TTC
[ENA]
¡û
>W2110098673
CAJFEB010000017
Alphaproteobacteria
Bosea sp. 7B [CAJFEB]
399447
399373
-
Glu
TTC
[ENA]
¡û
>W2110424831
JAELTI010000061
Alphaproteobacteria
Bosea sp. ASV33 [JAELTI]
22146
22072
-
Glu
TTC
[ENA]
¡û
>C201110394
CP042331
Alphaproteobacteria
Bosea sp. F3-2 [CP042331]
1777352
1777278
-
Glu
TTC
-
¡û
>C231458633
CP102774
Alphaproteobacteria
Bosea sp. NBC_00436 [CP102774]
1175722
1175796
+
Glu
TTC
-
¡û
>C241007125
AP022848
Alphaproteobacteria
Bosea sp. ANAM02 [AP022848]
3066820
3066746
-
Glu
TTC
-
¡û
>C241300927
CP132359
Alphaproteobacteria
Bosea beijingensis REN20 [CP132359]
887574
887500
-
Glu
TTC
-
¡û
>W1511353033
JROW01000445
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
8355
8281
-
Glu
TTC
[ENA]
¡û
>W1610720347
LMAR01000001
Alphaproteobacteria
Bosea thiooxidans [LMAR]
339244
339318
+
Glu
TTC
[ENA]
¡û
>W1610731856
LMJU01000001
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
328845
328771
-
Glu
TTC
[ENA]
¡û
>W1610732001
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
925928
925854
-
Glu
TTC
[ENA]
¡û
>W1710515682
FNBZ01000001
Alphaproteobacteria
Bosea robiniae [FNBZ]
294483
294409
-
Glu
TTC
[ENA]
¡û
>W1710544016
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
291421
291347
-
Glu
TTC
[ENA]
¡û
>W1710556971
FOKP01000001
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
228992
229066
+
Glu
TTC
[ENA]
¡û
>W1710596427
FTMO01000001
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
203498
203424
-
Glu
TTC
[ENA]
¡û
>W1710603291
FUYX01000011
Alphaproteobacteria
Bosea thiooxidans [FUYX]
109405
109479
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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