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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37110 (29 seq.)
>WENV180284763
OBID01108233
[OBID] metagenome; sludge
96
7
-
Ser
CGA
[ENA]
¡û
>WENV180353127
OBLQ010557256
[OBLQ] soil metagenome; soil
230
319
+
Ser
CGA
[ENA]
¡û
>W08009519
ABPH01000011
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
148721
148810
+
Ser
CGA
[ENA]
¡û
>WENV183742414
PJUH01028236
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
91
2
-
Ser
CGA
[ENA]
¡û
>WENV183742874
PJUI01003007
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
323
234
-
Ser
CGA
[ENA]
¡û
>C181081677
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
1258856
1258767
-
Ser
CGA
-
¡û
>C09106300
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
3493138
3493227
+
Ser
CGA
[Ensembl]
¡û
>W2010497584
JAALFE010000009
Alphaproteobacteria
Rhodobacter sp. HX-7-19 [JAALFE]
142389
142300
-
Ser
CGA
[ENA]
¡û
>W2010593300
JABEQD010000010
Alphaproteobacteria
Gluconacetobacter aggeris LMG 27801 [JABEQD]
102214
102125
-
Ser
CGA
[ENA]
¡û
>W2010593614
JABEQJ010000071
Alphaproteobacteria
Gluconacetobacter sacchari LMG 19747 [JABEQJ]
306
217
-
Ser
CGA
[ENA]
¡û
>W2010593639
JABEQK010000005
Alphaproteobacteria
Gluconacetobacter takamatsuzukensis LMG 27800 [JABEQK]
68493
68404
-
Ser
CGA
[ENA]
¡û
>W2010593696
JABEQL010000015
Alphaproteobacteria
Gluconacetobacter tumulicola LMG 27725 [JABEQL]
78153
78064
-
Ser
CGA
[ENA]
¡û
>W2010593779
JABEQN010000006
Alphaproteobacteria
Gluconacetobacter sp. 1a LMG 1728 [JABEQN]
10336
10247
-
Ser
CGA
[ENA]
¡û
>W2010593860
JABEQP010000001
Alphaproteobacteria
Gluconacetobacter sp. 1c LMG 22058 [JABEQP]
469526
469615
+
Ser
CGA
[ENA]
¡û
>W2010651797
JABXXP010000044
Alphaproteobacteria
Nguyenibacter vanlangensis LMG 31431 [JABXXP]
2088
2177
+
Ser
CGA
[ENA]
¡û
>W2011496721
RXIO01000005
Alphaproteobacteria
Ancylobacter aquaticus UV5 [RXIO]
142033
142122
+
Ser
CGA
[ENA]
¡û
>W2012044060
VITL01000005
Alphaproteobacteria
Gluconacetobacter diazotrophicus PR 4 [VITL]
40493
40404
-
Ser
CGA
[ENA]
¡û
>W2012088618
VMBP01000001
Alphaproteobacteria
Starkeya sp. 3C [VMBP]
535490
535401
-
Ser
CGA
[ENA]
¡û
>W2110593084
JAHCQH010000015
Alphaproteobacteria
Ancylobacter sp. VKM B-3255 [JAHCQH]
1048807
1048896
+
Ser
CGA
[ENA]
¡û
>C201154089
CP045144
Alphaproteobacteria
Ancylobacter sp. TS-1 [CP045144]
2564239
2564150
-
Ser
CGA
-
¡û
>C211196958
CP064972
Acidobacteriota
Holophagales bacterium [CP064972]
882986
882897
-
Ser
CGA
-
¡û
>W2310008771
BAQH01000089
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [BAQH]
8692
8781
+
Ser
CGA
[ENA]
¡û
>W2310008893
BAQL01000223
Alphaproteobacteria
Gluconacetobacter liquefaciens NRIC 0522 [BAQL]
160
249
+
Ser
CGA
[ENA]
¡û
>W2310009050
BAQP01000215
Alphaproteobacteria
Gluconacetobacter sacchari DSM 12717 [BAQP]
263
174
-
Ser
CGA
[ENA]
¡û
>W2310022958
BSFM01000009
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [BSFM]
8716
8805
+
Ser
CGA
[ENA]
¡û
>W11186768
CADP01000012
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
17884
17795
-
Ser
CGA
[ENA]
¡û
>W1710535237
FNSK01000001
Alphaproteobacteria
Rhodobacter sp. 24-YEA-8 [FNSK]
1530055
1530144
+
Ser
CGA
[ENA]
¡û
>W1710600359
FUWJ01000002
Alphaproteobacteria
Enhydrobacter aerosaccus [FUWJ]
479793
479704
-
Ser
CGA
[ENA]
¡û
>W1710609906
FYEH01000003
Alphaproteobacteria
Arboricoccus pini B29T1 [FYEH]
22379
22290
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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