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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371144 (130 seq.)
>W1710786260
LJIV01000001
Bacillota
Leuconostoc lactis [LJIV]
19467
19394
-
Asn
GTT
[ENA]
¡û
>W1711612499
MOWQ01000022
Bacillota
Leuconostoc sp. BM2 [MOWQ]
4876
4803
-
Asn
GTT
[ENA]
¡û
>W1711617424
MPAL01000025
Bacillota
Leuconostoc pseudomesenteroides [MPAL]
7758
7685
-
Asn
GTT
[ENA]
¡û
>W1711617719
MPAR01000028
Bacillota
Leuconostoc pseudomesenteroides [MPAR]
3122
3049
-
Asn
GTT
[ENA]
¡û
>W1711618149
MPBA01000023
Bacillota
Leuconostoc pseudomesenteroides [MPBA]
24385
24458
+
Asn
GTT
[ENA]
¡û
>W1711618170
MPBB01000007
Bacillota
Leuconostoc pseudomesenteroides [MPBB]
24267
24340
+
Asn
GTT
[ENA]
¡û
>W1711618219
MPBC01000008
Bacillota
Leuconostoc pseudomesenteroides [MPBC]
24635
24708
+
Asn
GTT
[ENA]
¡û
>W1711618301
MPBD01000024
Bacillota
Leuconostoc pseudomesenteroides [MPBD]
24385
24458
+
Asn
GTT
[ENA]
¡û
>W1711622572
MPEE01000025
Bacillota
Leuconostoc pseudomesenteroides [MPEE]
7758
7685
-
Asn
GTT
[ENA]
¡û
>W1711624832
MPHN01000022
Bacillota
Leuconostoc pseudomesenteroides [MPHN]
20735
20808
+
Asn
GTT
[ENA]
¡û
>W1711624871
MPHO01000019
Bacillota
Leuconostoc pseudomesenteroides [MPHO]
3159
3086
-
Asn
GTT
[ENA]
¡û
>W1711624926
MPHP01000017
Bacillota
Leuconostoc pseudomesenteroides [MPHP]
24267
24340
+
Asn
GTT
[ENA]
¡û
>W1711624959
MPHQ01000017
Bacillota
Leuconostoc pseudomesenteroides [MPHQ]
7636
7709
+
Asn
GTT
[ENA]
¡û
>W1711625011
MPHR01000028
Bacillota
Leuconostoc pseudomesenteroides [MPHR]
15091
15164
+
Asn
GTT
[ENA]
¡û
>W1711625070
MPHS01000024
Bacillota
Leuconostoc pseudomesenteroides [MPHS]
7758
7685
-
Asn
GTT
[ENA]
¡û
>W1711625121
MPHT01000023
Bacillota
Leuconostoc pseudomesenteroides [MPHT]
7727
7654
-
Asn
GTT
[ENA]
¡û
>W1711625161
MPHU01000021
Bacillota
Leuconostoc pseudomesenteroides [MPHU]
161
90
-
Asn
GTT
[ENA]
¡û
>W1711627115
MPLF01000022
Bacillota
Leuconostoc pseudomesenteroides [MPLF]
4876
4803
-
Asn
GTT
[ENA]
¡û
>W1711627172
MPLG01000026
Bacillota
Leuconostoc pseudomesenteroides [MPLG]
24642
24715
+
Asn
GTT
[ENA]
¡û
>W1711627359
MPLK01000024
Bacillota
Leuconostoc pseudomesenteroides [MPLK]
5377
5304
-
Asn
GTT
[ENA]
¡û
>W1711627417
MPLL01000008
Bacillota
Leuconostoc lactis [MPLL]
24729
24656
-
Asn
GTT
[ENA]
¡û
>W1711627465
MPLM01000026
Bacillota
Leuconostoc pseudomesenteroides [MPLM]
3206
3133
-
Asn
GTT
[ENA]
¡û
>W1711627509
MPLN01000007
Bacillota
Leuconostoc lactis [MPLN]
24729
24656
-
Asn
GTT
[ENA]
¡û
>W1711627768
MPLS01000023
Bacillota
Leuconostoc pseudomesenteroides [MPLS]
7758
7685
-
Asn
GTT
[ENA]
¡û
>W1711999786
NDXG01000012
Bacillota
Leuconostoc citreum [NDXG]
66771
66844
+
Asn
GTT
[ENA]
¡û
>C171047496
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
561494
561421
-
Asn
GTT
-
¡û
>WENV180503606
OCAM01075338
[OCAM] human gut metagenome; faeces
145
72
-
Asn
GTT
[ENA]
¡û
>W141244903
CAKV01000039
Bacillota
Leuconostoc pseudomesenteroides 4882 [CAKV]
142
69
-
Asn
GTT
[ENA]
¡û
>WENV182610765
OJJW01000475
[OJJW] metagenome; faeces
1507
1434
-
Asn
GTT
[ENA]
¡û
>C08005989
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1753490
1753563
+
Asn
GTT
[Ensembl]
¡û
>W141292113
JAUI01000017
Bacillota
Leuconostoc pseudomesenteroides 1159 [JAUI]
31494
31421
-
Asn
GTT
[ENA]
¡û
>WENV170016623
AZMM01018623
[AZMM] human gut metagenome; premature infant gut
746
673
-
Asn
GTT
[ENA]
¡û
>W141402123
JDVA01000041
Bacillota
Leuconostoc pseudomesenteroides PS12 [JDVA]
3358
3285
-
Asn
GTT
[ENA]
¡û
>WENV170659820
JXWR01147240
[JXWR] soil metagenome; rice field; ambient CO2
383
456
+
Asn
GTT
[ENA]
¡û
>W141695511
JMEA01000009
Bacillota
Leuconostoc lactis [JMEA]
57018
57091
+
Asn
GTT
[ENA]
¡û
>W1910181833
BJMJ01000028
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
357
284
-
Asn
GTT
[ENA]
¡û
>W1910821969
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
889897
889970
+
Asn
GTT
[ENA]
¡û
>W1911177194
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1686553
1686626
+
Asn
GTT
[ENA]
¡û
>W1911283610
NTJC01000007
Bacillota
Leuconostoc citreum TR116 [NTJC]
17486
17413
-
Asn
GTT
[ENA]
¡û
>W1911631647
PUFH01000001
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
66757
66830
+
Asn
GTT
[ENA]
¡û
>W1911631791
PUFI01000009
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
107707
107634
-
Asn
GTT
[ENA]
¡û
>W1911631799
PUFI01000014
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
185916
185989
+
Asn
GTT
[ENA]
¡û
>W1911631803
PUFI01000015
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
205416
205342
-
Asn
GTT
[ENA]
¡û
>W1911631805
PUFI01000015
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
175424
175351
-
Asn
GTT
[ENA]
¡û
>W1810573498
QEKT01000011
Bacillota
Convivina intestini DSM 28795 [QEKT]
17444
17518
+
Asn
GTT
[ENA]
¡û
>W1810705516
QMJJ01000006
Bacillota
Leuconostoc pseudomesenteroides KMB_610 [QMJJ]
47612
47685
+
Asn
GTT
[ENA]
¡û
>W2010092902
BJJW01000015
Bacillota
Leuconostoc citreum F192-5 [BJJW]
72720
72793
+
Asn
GTT
[ENA]
¡û
>W2010092952
BJJX01000004
Bacillota
Leuconostoc citreum NRIC 1776 [BJJX]
66574
66647
+
Asn
GTT
[ENA]
¡û
>W2010095482
BJMJ01000028
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
357
284
-
Asn
GTT
[ENA]
¡û
>W2010099610
BJUO01000009
Bacillota
Leuconostoc citreum NBRC 102476 [BJUO]
61773
61846
+
Asn
GTT
[ENA]
¡û
>W2010167473
CABFLC010000306
Bacillota
Leuconostoc pseudomesenteroides [CABFLC]
47979
48052
+
Asn
GTT
[ENA]
¡û
>W2010252052
CABIZG020000005
Bacillota
Leuconostocaceae bacterium [CABIZG]
69272
69199
-
Asn
GTT
[ENA]
¡û
>W2010581298
JAAXPY010000004
Bacillota
Leuconostoc pseudomesenteroides NCDO 768 [JAAXPY]
45337
45264
-
Asn
GTT
[ENA]
¡û
>W2010678064
JACDIP010000026
Bacillota
Leuconostoc citreum BD1707 [JACDIP]
44516
44589
+
Asn
GTT
[ENA]
¡û
>W2010687098
JACGAK010000001
Bacillota
Leuconostoc lactis SBC001 [JACGAK]
12620
12547
-
Asn
GTT
[ENA]
¡û
>W2010688403
JACGMK010000010
Bacillota
Leuconostoc citreum SG255 [JACGMK]
17489
17416
-
Asn
GTT
[ENA]
¡û
>W2010918302
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
889897
889970
+
Asn
GTT
[ENA]
¡û
>W2011032681
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1686553
1686626
+
Asn
GTT
[ENA]
¡û
>W2011074670
NTJC01000007
Bacillota
Leuconostoc citreum TR116 [NTJC]
17486
17413
-
Asn
GTT
[ENA]
¡û
>W2011183260
PDDF01000004
Bacillota
Leuconostoc citreum TMW21194 [PDDF]
66523
66596
+
Asn
GTT
[ENA]
¡û
>W2011222662
PUFH01000001
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
66757
66830
+
Asn
GTT
[ENA]
¡û
>W2011222806
PUFI01000009
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
107707
107634
-
Asn
GTT
[ENA]
¡û
>W2011222814
PUFI01000014
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
185916
185989
+
Asn
GTT
[ENA]
¡û
>W2011222818
PUFI01000015
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
205416
205342
-
Asn
GTT
[ENA]
¡û
>W2011222820
PUFI01000015
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
175424
175351
-
Asn
GTT
[ENA]
¡û
>W2011241147
QFDE01000004
Bacillota
Leuconostoc citreum G4 [QFDE]
17488
17415
-
Asn
GTT
[ENA]
¡û
>W2011241374
QFDI01000007
Bacillota
Leuconostoc citreum TR153 [QFDI]
17486
17413
-
Asn
GTT
[ENA]
¡û
>W2011241392
QFDJ01000005
Bacillota
Leuconostoc pseudomesenteroides TR070 [QFDJ]
71492
71565
+
Asn
GTT
[ENA]
¡û
>W2011406727
RCYK01000011
Bacillota
Leuconostoc lactis aa_0143 [RCYK]
9878
9805
-
Asn
GTT
[ENA]
¡û
>W2012362775
WKNR01000012
Bacillota
Leuconostoc lactis BIOML-A1 [WKNR]
9878
9805
-
Asn
GTT
[ENA]
¡û
>W2012433172
WSZI01000019
Bacillota
Leuconostoc lactis AV1n [WSZI]
19263
19336
+
Asn
GTT
[ENA]
¡û
>W2110017916
BMBO01000006
Bacillota
Leuconostoc pseudomesenteroides 17-2 [BMBO]
49376
49449
+
Asn
GTT
[ENA]
¡û
>W2110017964
BMBP01000004
Bacillota
Leuconostoc pseudomesenteroides LMG 11482 [BMBP]
45358
45285
-
Asn
GTT
[ENA]
¡û
>W2110018024
BMBQ01000010
Bacillota
Leuconostoc pseudomesenteroides LMG 11483 [BMBQ]
43921
43848
-
Asn
GTT
[ENA]
¡û
>W2110018065
BMBR01000008
Bacillota
Leuconostoc falkenbergense C [BMBR]
30435
30362
-
Asn
GTT
[ENA]
¡û
>W2110018124
BMBS01000028
Bacillota
Leuconostoc falkenbergense LMG 10779 [BMBS]
3151
3078
-
Asn
GTT
[ENA]
¡û
>W2110018149
BMBT01000006
Bacillota
Leuconostoc falkenbergense LMG 18969 [BMBT]
29129
29056
-
Asn
GTT
[ENA]
¡û
>W2110046546
BMWM01000010
Bacillota
Leuconostoc lactis JCM 6123 [BMWM]
952
879
-
Asn
GTT
[ENA]
¡û
>W2110070750
BPKV01000009
Bacillota
Leuconostoc holzapfelii JCM 16942 [BPKV]
62865
62938
+
Asn
GTT
[ENA]
¡û
>W2110070823
BPKX01000008
Bacillota
Leuconostoc lactis JCM 6123 [BPKX]
957
884
-
Asn
GTT
[ENA]
¡û
>W2110070892
BPKY01000008
Bacillota
Leuconostoc miyukkimchii JCM 17445 [BPKY]
44963
44890
-
Asn
GTT
[ENA]
¡û
>W2110070938
BPKZ01000015
Bacillota
Leuconostoc palmae JCM 16944 [BPKZ]
348
421
+
Asn
GTT
[ENA]
¡û
>W2110274905
JACVUE010000005
Bacillota
Leuconostoc sp. S50 [JACVUE]
69299
69226
-
Asn
GTT
[ENA]
¡û
>W2110274947
JACVUF010000004
Bacillota
Leuconostoc sp. S51 [JACVUF]
74357
74430
+
Asn
GTT
[ENA]
¡û
>W2110299962
JADAXK010000010
Bacillota
Leuconostoc citreum DmW_137 [JADAXK]
17458
17385
-
Asn
GTT
[ENA]
¡û
>W2110348577
JADNCM010000009
Bacillota
Leuconostoc lactis 1001262B_160229_C9 [JADNCM]
19707
19634
-
Asn
GTT
[ENA]
¡û
>W2110351653
JADNGQ010000006
Bacillota
Leuconostoc lactis 1001095IJ_161003_G5 [JADNGQ]
56879
56952
+
Asn
GTT
[ENA]
¡û
>W2110442424
JAERKP010000005
Bacillota
Leuconostoc pseudomesenteroides Dm-9 [JAERKP]
76707
76780
+
Asn
GTT
[ENA]
¡û
>W2110578751
JAGXCE010000012
Bacillota
Leuconostoc lactis 1.2.28 [JAGXCE]
19631
19558
-
Asn
GTT
[ENA]
¡û
>W2110581335
JAGYGO010000005
Bacillota
Leuconostoc citreum 3.8.12 [JAGYGO]
72711
72784
+
Asn
GTT
[ENA]
¡û
>W2110581353
JAGYGP010000001
Bacillota
Leuconostoc fallax 1.2.22 [JAGYGP]
336059
336133
+
Asn
GTT
[ENA]
¡û
>W2110581355
JAGYGP010000001
Bacillota
Leuconostoc fallax 1.2.22 [JAGYGP]
366051
366124
+
Asn
GTT
[ENA]
¡û
>W2110581369
JAGYGP010000002
Bacillota
Leuconostoc fallax 1.2.22 [JAGYGP]
106278
106205
-
Asn
GTT
[ENA]
¡û
>C211050737
CP039736
Bacillota
Leuconostoc sp. LN180020 [CP039736]
630291
630218
-
Asn
GTT
-
¡û
>C211137971
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
197693
197619
-
Asn
GTT
-
¡û
>C211180886
CP063830
Bacillota
Leuconostoc citreum 37 [CP063830]
1903146
1903219
+
Asn
GTT
-
¡û
>C211218761
CP065975
Bacillota
Leuconostoc pseudomesenteroides FDAARGOS_1004 [CP065975]
764630
764703
+
Asn
GTT
-
¡û
>C211219360
CP065993
Bacillota
Leuconostoc pseudomesenteroides FDAARGOS_1003 [CP065993]
2076443
2076516
+
Asn
GTT
-
¡û
>C211277590
CP070515
Bacillota
Leuconostoc falkenbergense FDAARGOS_1201 [CP070515]
587812
587739
-
Asn
GTT
-
¡û
>W1510046233
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
96903
96976
+
Asn
GTT
[ENA]
¡û
>W1510046295
CCNH01000010
Bacillota
Leuconostoc citreum [CCNH]
172783
172856
+
Asn
GTT
[ENA]
¡û
>C231469212
CP103386
Bacillota
Leuconostoc citreum PL105 [CP103386]
1758855
1758928
+
Asn
GTT
-
¡û
>C231553912
CP113947
Bacillota
Leuconostoc pseudomesenteroides L64 [CP113947]
1999753
1999826
+
Asn
GTT
-
¡û
>C241065096
CP042383
Bacillota
Leuconostoc pseudomesenteroides CBA3630 [CP042383]
380267
380340
+
Asn
GTT
-
¡û
>C241065206
CP042387
Bacillota
Leuconostoc lactis CBA3625 [CP042387]
721279
721206
-
Asn
GTT
-
¡û
>C241065294
CP042390
Bacillota
Leuconostoc lactis CBA3626 [CP042390]
661319
661392
+
Asn
GTT
-
¡û
>C241065429
CP042393
Bacillota
Leuconostoc citreum CBA3623 [CP042393]
1546902
1546975
+
Asn
GTT
-
¡û
>C241065591
CP042410
Bacillota
Leuconostoc citreum CBA3621 [CP042410]
1752296
1752223
-
Asn
GTT
-
¡û
>C241065666
CP042413
Bacillota
Leuconostoc citreum CBA3624 [CP042413]
398656
398583
-
Asn
GTT
-
¡û
>C241065731
CP042418
Bacillota
Leuconostoc citreum CBA3627 [CP042418]
657289
657216
-
Asn
GTT
-
¡û
>C241065752
CP042420
Bacillota
Leuconostoc lactis CBA3622 [CP042420]
511233
511306
+
Asn
GTT
-
¡û
>C241228856
CP116456
Bacillota
Leuconostoc lactis DMLL10 [CP116456]
1649053
1649126
+
Asn
GTT
-
¡û
>C241310017
CP133560
Bacillota
Leuconostoc citreum SH12 [CP133560]
1767793
1767866
+
Asn
GTT
-
¡û
>W2310029267
BSTE01000014
Bacillota
Leuconostoc lactis NBRC 102477 [BSTE]
483
410
-
Asn
GTT
[ENA]
¡û
>W1511468957
JVUU01000022
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
17759
17686
-
Asn
GTT
[ENA]
¡û
>W1511469005
JVUV01000029
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
14432
14505
+
Asn
GTT
[ENA]
¡û
>W11137119
AEGQ01000045
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
23266
23339
+
Asn
GTT
[ENA]
¡û
>W11138663
AEIZ01000015
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
177193
177120
-
Asn
GTT
[ENA]
¡û
>W11138671
AEIZ01000020
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
73929
74002
+
Asn
GTT
[ENA]
¡û
>W11138681
AEIZ01000026
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
68501
68426
-
Asn
GTT
[ENA]
¡û
>W11138683
AEIZ01000026
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
38529
38456
-
Asn
GTT
[ENA]
¡û
>W11142020
AEOQ01000952
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
45208
45135
-
Asn
GTT
[ENA]
¡û
>W11184728
BACM01001045
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
483
556
+
Asn
GTT
[ENA]
¡û
>W11184748
BACM01002086
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
8271
8198
-
Asn
GTT
[ENA]
¡û
>C161100115
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
885396
885323
-
Asn
GTT
[Ensembl]
¡û
>W121127452
CAGE01000012
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
66545
66618
+
Asn
GTT
[ENA]
¡û
>W121127495
CAGF01000009
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
72711
72784
+
Asn
GTT
[ENA]
¡û
>W121127551
CAGG01000018
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
9249
9322
+
Asn
GTT
[ENA]
¡û
>W1610650115
LJIV01000001
Bacillota
Leuconostoc lactis [LJIV]
19467
19394
-
Asn
GTT
[ENA]
¡û
>W1710511012
FMYJ01000012
Bacillota
Leuconostocaceae bacterium R-53105 [FMYJ]
20972
20898
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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