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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371803 (32 seq.)
>W131240991
BAOU01000020
Bacteroidota
Porphyromonas crevioricanis JCM 15906 [BAOU]
11030
10958
-
Glu
TTC
[ENA]
¡û
>W131240992
BAOU01000020
Bacteroidota
Porphyromonas crevioricanis JCM 15906 [BAOU]
10625
10551
-
Glu
TTC
[ENA]
¡û
>W131241033
BAOV01000010
Bacteroidota
Porphyromonas crevioricanis JCM 13913 [BAOV]
11050
10978
-
Glu
TTC
[ENA]
¡û
>W131241034
BAOV01000010
Bacteroidota
Porphyromonas crevioricanis JCM 13913 [BAOV]
10645
10571
-
Glu
TTC
[ENA]
¡û
>WENV181167920
OEIU01106412
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
630
702
+
Glu
TTC
[ENA]
¡û
>W141400830
JDSI01000004
Bacteroidota
Schleiferia thermophila str. Yellowstone [JDSI]
184338
184264
-
Glu
TTC
[ENA]
¡û
>C181213891
LS483447
Bacteroidota
Porphyromonas crevioricanis NCTC12858 [LS483447]
1019850
1019922
+
Glu
TTC
-
¡û
>C181213892
LS483447
Bacteroidota
Porphyromonas crevioricanis NCTC12858 [LS483447]
1020255
1020327
+
Glu
TTC
-
¡û
>W1910129586
BHZE01000019
Bacteroidota
Schleiferia sp. LA [BHZE]
21864
21790
-
Glu
TTC
[ENA]
¡û
>W1910129587
BHZE01000019
Bacteroidota
Schleiferia sp. LA [BHZE]
21781
21709
-
Glu
TTC
[ENA]
¡û
>W1910129625
BHZF01000003
Bacteroidota
Schleiferia thermophila JCM 30197 [BHZF]
201822
201750
-
Glu
TTC
[ENA]
¡û
>W1910129626
BHZF01000003
Bacteroidota
Schleiferia thermophila JCM 30197 [BHZF]
201739
201665
-
Glu
TTC
[ENA]
¡û
>W1810759846
QPJS01000003
Bacteroidota
Schleiferia thermophila DSM 21410 [QPJS]
201790
201718
-
Glu
TTC
[ENA]
¡û
>W1810759847
QPJS01000003
Bacteroidota
Schleiferia thermophila DSM 21410 [QPJS]
201707
201633
-
Glu
TTC
[ENA]
¡û
>W2010082601
BHZE01000019
Bacteroidota
Schleiferia sp. LA [BHZE]
21864
21790
-
Glu
TTC
[ENA]
¡û
>W2010082602
BHZE01000019
Bacteroidota
Schleiferia sp. LA [BHZE]
21781
21709
-
Glu
TTC
[ENA]
¡û
>W2010082640
BHZF01000003
Bacteroidota
Schleiferia thermophila JCM 30197 [BHZF]
201822
201750
-
Glu
TTC
[ENA]
¡û
>W2010082641
BHZF01000003
Bacteroidota
Schleiferia thermophila JCM 30197 [BHZF]
201739
201665
-
Glu
TTC
[ENA]
¡û
>W2110315672
JADFUB010000011
Bacteroidota
Bacteroidetes bacterium endosymbiont of Orzyaephilus surinamensis JKI-2014 [JADFUB]
2111
2039
-
Glu
TTC
[ENA]
¡û
>WENV11100433
AERA01005814
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
2688
2760
+
Glu
TTC
[ENA]
¡û
>W1511328211
JQJB01000001
Bacteroidota
Porphyromonas crevioricanis COT-253 OH2125 [JQJB]
34359
34287
-
Glu
TTC
[ENA]
¡û
>W1511328212
JQJB01000001
Bacteroidota
Porphyromonas crevioricanis COT-253 OH2125 [JQJB]
33954
33880
-
Glu
TTC
[ENA]
¡û
>W1511328296
JQJC01000030
Bacteroidota
Porphyromonas crevioricanis COT-253 OH1447 [JQJC]
71481
71553
+
Glu
TTC
[ENA]
¡û
>W1511328297
JQJC01000030
Bacteroidota
Porphyromonas crevioricanis COT-253 OH1447 [JQJC]
71886
71960
+
Glu
TTC
[ENA]
¡û
>C121011505
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
3265970
3266044
+
Glu
TTC
[Ensembl]
¡û
>C121011507
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
3290233
3290305
+
Glu
TTC
[Ensembl]
¡û
>C121011508
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
3290354
3290428
+
Glu
TTC
[Ensembl]
¡û
>W121017870
AGSC01000047
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
367705
367779
+
Glu
TTC
[ENA]
¡û
>W121017872
AGSC01000047
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
391969
392041
+
Glu
TTC
[ENA]
¡û
>W121017873
AGSC01000047
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
392090
392164
+
Glu
TTC
[ENA]
¡û
>W1710601447
FUXH01000007
Bacteroidota
Porphyromonas crevioricanis [FUXH]
35767
35695
-
Glu
TTC
[ENA]
¡û
>W1710601448
FUXH01000007
Bacteroidota
Porphyromonas crevioricanis [FUXH]
35362
35288
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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