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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371820 (9 seq.)
>W1910175517
BJCE01000194
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
2554
2482
-
Lys
CTT
[ENA]
¡û
>W2010088741
BJCE01000194
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
2554
2482
-
Lys
CTT
[ENA]
¡û
>W2110228873
JACJPT010000006
Cyanobacteriota
Sphaerospermopsis sp. FACHB-1094 [JACJPT]
75308
75236
-
Lys
CTT
[ENA]
¡û
>W2110228932
JACJPU010000036
Cyanobacteriota
Sphaerospermopsis sp. FACHB-1194 [JACJPU]
35158
35086
-
Lys
CTT
[ENA]
¡û
>W2110234364
JACJUZ010000061
Cyanobacteriota
Sphaerospermopsis sp. LEGE 00249 [JACJUZ]
4669
4596
-
Lys
CTT
[ENA]
¡û
>W2110310860
JADEWB010000091
Cyanobacteriota
Anabaena aphanizomenioides LEGE 00250 [JADEWB]
4935
4863
-
Lys
CTT
[ENA]
¡û
>W2110312376
JADEXH010000046
Cyanobacteriota
Sphaerospermopsis sp. LEGE 08334 [JADEXH]
42924
42852
-
Lys
CTT
[ENA]
¡û
>C211283935
CP071065
Cyanobacteriota
Nostoc sp. UHCC 0702 [CP071065]
4561583
4561655
+
Lys
CTT
-
¡û
>W1610931019
LUFH01000753
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
825
751
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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