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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371826 (68 seq.)
>W131241499
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
44646
44720
+
Gln
TTG
[ENA]
¡û
>W131241500
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
44843
44917
+
Gln
TTG
[ENA]
¡û
>W131241503
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
45283
45357
+
Gln
TTG
[ENA]
¡û
>C171016812
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
1978852
1978926
+
Gln
TTG
-
¡û
>W131169986
ARFE01000003
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
193347
193273
-
Gln
TTG
[ENA]
¡û
>W131223259
AUBY01000007
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
39013
38939
-
Gln
TTG
[ENA]
¡û
>W131223262
AUBY01000007
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
38595
38521
-
Gln
TTG
[ENA]
¡û
>W131223316
AUBZ01000014
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
24900
24974
+
Gln
TTG
[ENA]
¡û
>W131223317
AUBZ01000014
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
25039
25113
+
Gln
TTG
[ENA]
¡û
>W131223320
AUBZ01000014
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
25385
25459
+
Gln
TTG
[ENA]
¡û
>WENV180346072
OBLN01023968
[OBLN] sediment metagenome; sediment
474
548
+
Gln
TTG
[ENA]
¡û
>WENV170024701
BCQL01101999
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
507
433
-
Gln
TTG
[ENA]
¡û
>C181113470
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
570910
570836
-
Gln
TTG
-
¡û
>W09109203
ABUB01000001
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
521136
521210
+
Gln
TTG
[ENA]
¡û
>W1910178251
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
249764
249838
+
Gln
TTG
[ENA]
¡û
>W1910178252
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
249965
250039
+
Gln
TTG
[ENA]
¡û
>W1910178255
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
250404
250478
+
Gln
TTG
[ENA]
¡û
>W1911717904
QQTG01000002
Gammaproteobacteria
Kangiella sp. HD9-110m-PIT-SAG07 [QQTG]
115916
115842
-
Gln
TTG
[ENA]
¡û
>W1810628289
QICH01000002
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
491890
491964
+
Gln
TTG
[ENA]
¡û
>C151074716
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
1968378
1968452
+
Gln
TTG
[Ensembl]
¡û
>W2010091590
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
249764
249838
+
Gln
TTG
[ENA]
¡û
>W2010091591
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
249965
250039
+
Gln
TTG
[ENA]
¡û
>W2010091594
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
250404
250478
+
Gln
TTG
[ENA]
¡û
>W2011285949
QQTG01000002
Gammaproteobacteria
Kangiella sp. HD9-110m-PIT-SAG07 [QQTG]
115916
115842
-
Gln
TTG
[ENA]
¡û
>W2011355634
RAQO01000011
Gammaproteobacteria
Alteromonadaceae bacterium ALS 81 [RAQO]
498
424
-
Gln
TTG
[ENA]
¡û
>W2011355635
RAQO01000011
Gammaproteobacteria
Alteromonadaceae bacterium ALS 81 [RAQO]
92
18
-
Gln
TTG
[ENA]
¡û
>W2011858139
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
633743
633669
-
Gln
TTG
[ENA]
¡û
>W2011858140
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
633544
633470
-
Gln
TTG
[ENA]
¡û
>W2011858143
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
633105
633031
-
Gln
TTG
[ENA]
¡û
>W2012330163
WHRY01000002
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
554878
554952
+
Gln
TTG
[ENA]
¡û
>W2012330164
WHRY01000002
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
555075
555149
+
Gln
TTG
[ENA]
¡û
>W2012330167
WHRY01000002
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
555515
555589
+
Gln
TTG
[ENA]
¡û
>W2110016218
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
714484
714558
+
Gln
TTG
[ENA]
¡û
>W2110016219
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
714682
714756
+
Gln
TTG
[ENA]
¡û
>W2110016222
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
715122
715196
+
Gln
TTG
[ENA]
¡û
>W2110020778
BMDY01000004
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
42004
41930
-
Gln
TTG
[ENA]
¡û
>W2110020779
BMDY01000004
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
41815
41741
-
Gln
TTG
[ENA]
¡û
>W2110020782
BMDY01000004
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
41380
41306
-
Gln
TTG
[ENA]
¡û
>W2110024073
BMGO01000002
Gammaproteobacteria
Kangiella profundi CGMCC 1.12959 [BMGO]
197524
197450
-
Gln
TTG
[ENA]
¡û
>W2110240175
JACNML010000004
Gammaproteobacteria
Kangiella sp. PI [JACNML]
5142
5068
-
Gln
TTG
[ENA]
¡û
>W2110592288
JAHCLT010000002
Gammaproteobacteria
Kangiella taiwanensis KT1 [JAHCLT]
586713
586787
+
Gln
TTG
[ENA]
¡û
>C211007377
AP023029
Gammaproteobacteria
Agarivorans sp. YJW074 [AP023029]
3188875
3188949
+
Gln
TTG
-
¡û
>C211007378
AP023029
Gammaproteobacteria
Agarivorans sp. YJW074 [AP023029]
3189281
3189355
+
Gln
TTG
-
¡û
>C211007379
AP023029
Gammaproteobacteria
Agarivorans sp. YJW074 [AP023029]
3189505
3189579
+
Gln
TTG
-
¡û
>C211007453
AP023030
Gammaproteobacteria
Agarivorans sp. YJW194 [AP023030]
3180279
3180353
+
Gln
TTG
-
¡û
>C211007454
AP023030
Gammaproteobacteria
Agarivorans sp. YJW194 [AP023030]
3180685
3180759
+
Gln
TTG
-
¡û
>C211007455
AP023030
Gammaproteobacteria
Agarivorans sp. YJW194 [AP023030]
3180909
3180983
+
Gln
TTG
-
¡û
>C211007564
AP023031
Gammaproteobacteria
Agarivorans sp. YJW224 [AP023031]
1254971
1254897
-
Gln
TTG
-
¡û
>C211007565
AP023031
Gammaproteobacteria
Agarivorans sp. YJW224 [AP023031]
1254565
1254491
-
Gln
TTG
-
¡û
>C211007566
AP023031
Gammaproteobacteria
Agarivorans sp. YJW224 [AP023031]
1254341
1254267
-
Gln
TTG
-
¡û
>C211007618
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
3146097
3146171
+
Gln
TTG
-
¡û
>C211007619
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
3146294
3146368
+
Gln
TTG
-
¡û
>C211007622
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
3146734
3146808
+
Gln
TTG
-
¡û
>C211007713
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
3044040
3044114
+
Gln
TTG
-
¡û
>C211007714
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
3044239
3044313
+
Gln
TTG
-
¡û
>C211007717
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
3044678
3044752
+
Gln
TTG
-
¡û
>C231249178
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
3726148
3726222
+
Gln
TTG
-
¡û
>C231249179
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
3726345
3726419
+
Gln
TTG
-
¡û
>C231249182
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
3726785
3726859
+
Gln
TTG
-
¡û
>C231370469
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
1429564
1429490
-
Gln
TTG
-
¡û
>C231370470
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
1429371
1429297
-
Gln
TTG
-
¡û
>C231370473
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
1428931
1428857
-
Gln
TTG
-
¡û
>C241355067
CP140158
Gammaproteobacteria
Kangiella aquimarina DSMZ 16071 [CP140158]
2493770
2493844
+
Gln
TTG
-
¡û
>W2310018544
BQYL01000001
Gammaproteobacteria
Kangiella sp. TOML190 [BQYL]
328780
328854
+
Gln
TTG
[ENA]
¡û
>C10108031
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
638106
638032
-
Gln
TTG
[Ensembl]
¡û
>C161049630
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1222018
1222092
+
Gln
TTG
-
¡û
>C161049631
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1222207
1222281
+
Gln
TTG
-
¡û
>C161049634
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1222642
1222716
+
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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