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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371830 (104 seq.)
>W1710862326
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
1230438
1230366
-
Gln
CTG
[ENA]
¡û
>W1710864357
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
825471
825397
-
Gln
CTG
[ENA]
¡û
>W1710864514
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
2230141
2230215
+
Gln
CTG
[ENA]
¡û
>W1710865452
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1230403
1230331
-
Gln
CTG
[ENA]
¡û
>W1710866742
LMHS01000002
Actinomycetota
Microbacterium sp. Root180 [LMHS]
644396
644322
-
Gln
CTG
[ENA]
¡û
>W1710867916
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
1003954
1003880
-
Gln
CTG
[ENA]
¡û
>W1710868839
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
565368
565442
+
Gln
CTG
[ENA]
¡û
>W1710870071
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
164604
164676
+
Gln
CTG
[ENA]
¡û
>W1710870590
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1811921
1811993
+
Gln
CTG
[ENA]
¡û
>W1710872944
LMMJ01000012
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
2748
2820
+
Gln
CTG
[ENA]
¡û
>W1710873266
LMMR01000001
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
480800
480728
-
Gln
CTG
[ENA]
¡û
>W1710875784
LMOR01000002
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
224983
225057
+
Gln
CTG
[ENA]
¡û
>W1710878573
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
200321
200395
+
Gln
CTG
[ENA]
¡û
>W1711009281
LQQP01000012
Actinomycetota
Microbacterium sp. T32 [LQQP]
308589
308663
+
Gln
CTG
[ENA]
¡û
>W1711173327
LWCU01000001
Actinomycetota
Microbacterium sp. H83 [LWCU]
75403
75329
-
Gln
CTG
[ENA]
¡û
>W131217893
ATXF01000004
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
5610
5682
+
Gln
CTG
[ENA]
¡û
>W131217944
ATXG01000002
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
69826
69900
+
Gln
CTG
[ENA]
¡û
>W1711318579
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
284179
284253
+
Gln
CTG
[ENA]
¡û
>W1711385523
MEEH01000045
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
70270
70196
-
Gln
CTG
[ENA]
¡û
>W131184982
ARTJ01000002
Actinomycetota
Microbacterium sp. 11MF [ARTJ]
612518
612592
+
Gln
CTG
[ENA]
¡û
>W131226607
AUEM01000005
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
69560
69486
-
Gln
CTG
[ENA]
¡û
>W1711503436
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
484456
484382
-
Gln
CTG
[ENA]
¡û
>W1711505271
MKVJ01000001
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
18144
18218
+
Gln
CTG
[ENA]
¡û
>W1711719870
MTIO01000001
Actinomycetota
Microbacterium oleivorans [MTIO]
223121
223195
+
Gln
CTG
[ENA]
¡û
>W1711724802
MTQM01000009
Actinomycetota
Microbacterium sp. CSI-V [MTQM]
320578
320504
-
Gln
CTG
[ENA]
¡û
>WENV180030902
FTJN01418999
[FTJN] metagenome; soil
116
44
-
Gln
CTG
[ENA]
¢þ
>WENV180095831
MTBK01092088
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2596
2668
+
Gln
CTG
[ENA]
¢þ
>WENV180266266
OBEQ011735692
[OBEQ] groundwater metagenome; groundwater
295
223
-
Gln
CTG
[ENA]
¢þ
>W141188401
AYMR01000009
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
413807
413881
+
Gln
CTG
[ENA]
¡û
>W141223167
BADA01000090
Actinomycetota
Microbacterium sp. B19 [BADA]
1812
1738
-
Gln
CTG
[ENA]
¡û
>W141223261
BADC01000227
Actinomycetota
Corynebacterium-like bacterium B27 [BADC]
10025
9951
-
Gln
CTG
[ENA]
¡û
>W141243137
CAJF01000007
Actinomycetota
Microbacterium yannicii PS01 [CAJF]
148488
148562
+
Gln
CTG
[ENA]
¡û
>W141256068
CBVQ010000001
Actinomycetota
Microbacterium sp. C448 [CBVQ]
5145
5071
-
Gln
CTG
[ENA]
¡û
>W141289487
JARE01000047
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
144927
145001
+
Gln
CTG
[ENA]
¡û
>C181143986
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
1912362
1912288
-
Gln
CTG
-
¡û
>C181200422
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
1598539
1598611
+
Gln
CTG
-
¡û
>C191074820
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
1592210
1592138
-
Gln
CTG
-
¡û
>W141524564
JGZE01000004
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JGZE]
119178
119252
+
Gln
CTG
[ENA]
¡û
>W141532269
JHET01000007
Actinomycetota
Microbacterium sp. CH12i [JHET]
367824
367750
-
Gln
CTG
[ENA]
¡û
>C191158822
CP038266
Actinomycetota
Microbacterium wangchenii dk512 [CP038266]
2177404
2177332
-
Gln
CTG
-
¡û
>C191183325
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
1721262
1721334
+
Gln
CTG
-
¡û
>C191185962
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
1582446
1582518
+
Gln
CTG
-
¡û
>W1910181920
BJML01000006
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
10255
10183
-
Gln
CTG
[ENA]
¡û
>W1910211959
FMIR01000002
Actinomycetota
Microbacterium oxydans [FMIR]
3484
3412
-
Gln
CTG
[ENA]
¡û
>W1910377781
FUKR01000036
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
103740
103812
+
Gln
CTG
[ENA]
¡û
>W1911075291
NMUM01000023
Actinomycetota
Microbacterium lacus SDZm4 [NMUM]
149978
150050
+
Gln
CTG
[ENA]
¡û
>W1911140366
NOYP01000115
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
21222
21294
+
Gln
CTG
[ENA]
¡û
>W1911566435
PCOV01000001
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
487811
487883
+
Gln
CTG
[ENA]
¡û
>W1911566486
PCOW01000002
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
338651
338725
+
Gln
CTG
[ENA]
¡û
>W1911566682
PCPA01000001
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
205938
206010
+
Gln
CTG
[ENA]
¡û
>W1911566845
PCPD01000006
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
205922
205994
+
Gln
CTG
[ENA]
¡û
>W1911567099
PCPI01000001
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
332792
332720
-
Gln
CTG
[ENA]
¡û
>W1911567146
PCPJ01000001
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
663312
663240
-
Gln
CTG
[ENA]
¡û
>W1911567232
PCPL01000001
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
332797
332725
-
Gln
CTG
[ENA]
¡û
>W1911722374
QRAJ01000001
Actinomycetota
Bifidobacterium mongoliense BMONG18 [QRAJ]
306491
306417
-
Gln
CTG
[ENA]
¡û
>W1810091041
PGGU01000005
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
169521
169593
+
Gln
CTG
[ENA]
¡û
>W1810234121
PPEE01000004
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
86410
86482
+
Gln
CTG
[ENA]
¡û
>W1810248599
PQBR01000011
Actinomycetota
Microbacterium sp. CJ77 [PQBR]
53040
52968
-
Gln
CTG
[ENA]
¡û
>W1810475503
QAJB01000388
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
126
198
+
Gln
CTG
[ENA]
¡û
>W1810568853
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
897917
897843
-
Gln
CTG
[ENA]
¡û
>W1810568988
QEFA01000002
Actinomycetota
Agromyces badenianii 845 [QEFA]
127374
127448
+
Gln
CTG
[ENA]
¡û
>W1810743448
QORO01000001
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
934975
934903
-
Gln
CTG
[ENA]
¡û
>W1810787051
QRDK01000004
Actinomycetota
Microbacterium sp. AG157 [QRDK]
405076
405004
-
Gln
CTG
[ENA]
¡û
>W1810860828
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
1987493
1987565
+
Gln
CTG
[ENA]
¡û
>W1810861314
QTTU01000002
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
221476
221548
+
Gln
CTG
[ENA]
¡û
>C151093234
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
612668
612742
+
Gln
CTG
-
¡û
>W1510085889
CDWI01000011
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
841462
841534
+
Gln
CTG
[ENA]
¡û
>C11115191
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
3480768
3480842
+
Gln
CTG
[Ensembl]
¡û
>W1511528733
JYIU01000046
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
321304
321230
-
Gln
CTG
[ENA]
¡û
>W1511528936
JYIZ01000053
Actinomycetota
Microbacterium terrae DSM 12510 [JYIZ]
111705
111631
-
Gln
CTG
[ENA]
¡û
>W1511529041
JYJB01000010
Actinomycetota
Microbacterium hydrocarbonoxydans SA35 [JYJB]
684325
684251
-
Gln
CTG
[ENA]
¡û
>W1610519877
JDUO01000005
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JDUO]
23942
24016
+
Gln
CTG
[ENA]
¡û
>W1610590749
LDRR01000016
Actinomycetota
Microbacterium testaceum [LDRR]
6630
6556
-
Gln
CTG
[ENA]
¡û
>W1610590824
LDRS01000160
Actinomycetota
Microbacterium testaceum [LDRS]
2023
1949
-
Gln
CTG
[ENA]
¡û
>W1610590843
LDRT01000041
Actinomycetota
Microbacterium testaceum [LDRT]
40365
40291
-
Gln
CTG
[ENA]
¡û
>W1610590883
LDRU01000027
Actinomycetota
Microbacterium testaceum [LDRU]
29368
29294
-
Gln
CTG
[ENA]
¡û
>W1610724672
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
1230438
1230366
-
Gln
CTG
[ENA]
¡û
>W1610726703
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
825471
825397
-
Gln
CTG
[ENA]
¡û
>W1610726860
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
2230141
2230215
+
Gln
CTG
[ENA]
¡û
>W1610727798
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1230403
1230331
-
Gln
CTG
[ENA]
¡û
>W1610729088
LMHS01000002
Actinomycetota
Microbacterium sp. Root180 [LMHS]
644396
644322
-
Gln
CTG
[ENA]
¡û
>W1610730262
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
1003954
1003880
-
Gln
CTG
[ENA]
¡û
>W1610731185
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
565368
565442
+
Gln
CTG
[ENA]
¡û
>W1610732417
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
164604
164676
+
Gln
CTG
[ENA]
¡û
>W1610732936
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1811921
1811993
+
Gln
CTG
[ENA]
¡û
>W1610735290
LMMJ01000012
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
2748
2820
+
Gln
CTG
[ENA]
¡û
>W1610735612
LMMR01000001
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
480800
480728
-
Gln
CTG
[ENA]
¡û
>W1610738130
LMOR01000002
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
224983
225057
+
Gln
CTG
[ENA]
¡û
>W1610740919
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
200321
200395
+
Gln
CTG
[ENA]
¡û
>W1610857801
LQQP01000012
Actinomycetota
Microbacterium sp. T32 [LQQP]
308589
308663
+
Gln
CTG
[ENA]
¡û
>W1610981932
LWCU01000001
Actinomycetota
Microbacterium sp. H83 [LWCU]
75403
75329
-
Gln
CTG
[ENA]
¡û
>W1611061922
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
284179
284253
+
Gln
CTG
[ENA]
¡û
>W1710510818
FMYG01000002
Actinomycetota
Microbacterium enclense [FMYG]
229443
229515
+
Gln
CTG
[ENA]
¡û
>W1710516580
FNCR01000001
Actinomycetota
Microbacterium sp. 77mftsu3.1 [FNCR]
123620
123546
-
Gln
CTG
[ENA]
¡û
>W1710525091
FNJG01000002
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
501278
501206
-
Gln
CTG
[ENA]
¡û
>W1710525409
FNJN01000003
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
557737
557665
-
Gln
CTG
[ENA]
¡û
>W1710526739
FNKN01000001
Actinomycetota
Microbacterium sp. cf332 [FNKN]
511540
511468
-
Gln
CTG
[ENA]
¡û
>W1710535594
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
2233882
2233808
-
Gln
CTG
[ENA]
¡û
>W1710594663
FSRJ01000001
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
437704
437778
+
Gln
CTG
[ENA]
¡û
>W1710615290
JDUO01000005
Actinomycetota
Bifidobacterium mongoliense DSM 21395 [JDUO]
23942
24016
+
Gln
CTG
[ENA]
¡û
>W1710710029
LDRR01000016
Actinomycetota
Microbacterium testaceum [LDRR]
6630
6556
-
Gln
CTG
[ENA]
¡û
>W1710710104
LDRS01000160
Actinomycetota
Microbacterium testaceum [LDRS]
2023
1949
-
Gln
CTG
[ENA]
¡û
>W1710710123
LDRT01000041
Actinomycetota
Microbacterium testaceum [LDRT]
40365
40291
-
Gln
CTG
[ENA]
¡û
>W1710710163
LDRU01000027
Actinomycetota
Microbacterium testaceum [LDRU]
29368
29294
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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