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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371854 (60 seq.)
>W1711774222
MVIY01000026
Bacillota
Clostridium botulinum D/C [MVIY]
49817
49891
+
Asn
GTT
[ENA]
¡û
>W1711774257
MVIY01000095
Bacillota
Clostridium botulinum D/C [MVIY]
3749
3675
-
Asn
GTT
[ENA]
¡û
>W1711774275
MVIZ01000008
Bacillota
Clostridium botulinum D/C [MVIZ]
3754
3680
-
Asn
GTT
[ENA]
¡û
>W1711774314
MVIZ01000105
Bacillota
Clostridium botulinum D/C [MVIZ]
155
229
+
Asn
GTT
[ENA]
¡û
>W1711774347
MVJA01000060
Bacillota
Clostridium botulinum D/C [MVJA]
3707
3633
-
Asn
GTT
[ENA]
¡û
>W1711774384
MVJB01000028
Bacillota
Clostridium botulinum D/C [MVJB]
49813
49887
+
Asn
GTT
[ENA]
¡û
>W1711774416
MVJB01000082
Bacillota
Clostridium botulinum D/C [MVJB]
27
101
+
Asn
GTT
[ENA]
¡û
>W1711774436
MVJC01000012
Bacillota
Clostridium botulinum D/C [MVJC]
3756
3682
-
Asn
GTT
[ENA]
¡û
>C006229
CP000382
Bacillota
Clostridium novyi NT [CP000382]
166178
166252
+
Asn
GTT
[Ensembl]
¡û
>W08001253
ABDQ01000008
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
114763
114837
+
Asn
GTT
[ENA]
¡û
>WENV183087771
OLJO01000447
[OLJO] human gut metagenome; human gut
3865
3939
+
Asn
GTT
[ENA]
¢þ
>W141427391
JENK01000010
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
3850
3776
-
Asn
GTT
[ENA]
¡û
>W141427566
JENM01000014
Bacillota
Clostridium novyi A str. BKT29909 [JENM]
50903
50977
+
Asn
GTT
[ENA]
¡û
>W141427680
JENO01000002
Bacillota
Clostridium botulinum C/D str. It1 [JENO]
3831
3757
-
Asn
GTT
[ENA]
¡û
>W141427750
JENP01000001
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
150340
150414
+
Asn
GTT
[ENA]
¡û
>W141427887
JENR01000017
Bacillota
Clostridium botulinum D str. 16868 [JENR]
3901
3827
-
Asn
GTT
[ENA]
¡û
>W141427933
JENR01000048
Bacillota
Clostridium botulinum D str. 16868 [JENR]
263
337
+
Asn
GTT
[ENA]
¡û
>W141427977
JENS01000051
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
2826
2752
-
Asn
GTT
[ENA]
¡û
>W141428033
JENS01000103
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
63428
63502
+
Asn
GTT
[ENA]
¡û
>W141428098
JENT01000113
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
63551
63625
+
Asn
GTT
[ENA]
¡û
>W141428124
JENT01000136
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
521
595
+
Asn
GTT
[ENA]
¡û
>W141428147
JENU01000015
Bacillota
Clostridium sp. K25 [JENU]
4726
4652
-
Asn
GTT
[ENA]
¡û
>W141428214
JENU01000077
Bacillota
Clostridium sp. K25 [JENU]
276
202
-
Asn
GTT
[ENA]
¡û
>W141428281
JENV01000029
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
4190
4116
-
Asn
GTT
[ENA]
¡û
>W141428284
JENV01000030
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
42718
42644
-
Asn
GTT
[ENA]
¡û
>W141428319
JENW01000007
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
75919
75845
-
Asn
GTT
[ENA]
¡û
>W141428335
JENW01000034
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
58762
58836
+
Asn
GTT
[ENA]
¡û
>W141428428
JENX01000042
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
262
336
+
Asn
GTT
[ENA]
¡û
>W141428473
JENX01000110
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
73074
73148
+
Asn
GTT
[ENA]
¡û
>C191063965
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
688975
688901
-
Asn
GTT
-
¡û
>C191063971
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
674399
674325
-
Asn
GTT
-
¡û
>W09134509
ACSJ01000006
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
4554
4480
-
Asn
GTT
[ENA]
¡û
>W09134514
ACSJ01000007
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
1448747
1448673
-
Asn
GTT
[ENA]
¡û
>W141820446
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
873716
873642
-
Asn
GTT
[ENA]
¡û
>W1910483270
FXLO01000006
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
4158
4084
-
Asn
GTT
[ENA]
¡û
>W1910498549
FXWX01000023
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
351592
351666
+
Asn
GTT
[ENA]
¡û
>C11101096
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
305856
305930
+
Asn
GTT
[Ensembl]
¡û
>C11101097
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
310778
310852
+
Asn
GTT
[Ensembl]
¡û
>C11101134
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
305164
305238
+
Asn
GTT
[Ensembl]
¡û
>C11104897
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
176258
176332
+
Asn
GTT
[Ensembl]
¡û
>C11104899
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
185095
185169
+
Asn
GTT
[Ensembl]
¡û
>W1510882101
JDRX01000003
Bacillota
Clostridium novyi A str. 4570 [JDRX]
4004
3930
-
Asn
GTT
[ENA]
¡û
>W1510909005
JENJ01000014
Bacillota
Clostridium novyi A str. 4552 [JENJ]
4092
4018
-
Asn
GTT
[ENA]
¡û
>W11146135
AESB01000012
Bacillota
Clostridium botulinum BKT028387 [AESB]
36715
36789
+
Asn
GTT
[ENA]
¡û
>W11146182
AESB01000214
Bacillota
Clostridium botulinum BKT028387 [AESB]
237
311
+
Asn
GTT
[ENA]
¡û
>W11146217
AESC01000061
Bacillota
Clostridium botulinum V891 [AESC]
13376
13450
+
Asn
GTT
[ENA]
¡û
>W11146233
AESC01000135
Bacillota
Clostridium botulinum V891 [AESC]
238
312
+
Asn
GTT
[ENA]
¡û
>W1511687847
LFVU01000008
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
36330
36256
-
Asn
GTT
[ENA]
¡û
>W1511687855
LFVU01000014
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
66
140
+
Asn
GTT
[ENA]
¡û
>W1511687871
LFVU01000024
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
653
579
-
Asn
GTT
[ENA]
¡û
>W1511687877
LFVU01000027
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
275
349
+
Asn
GTT
[ENA]
¡û
>W1511707681
LGVP01000024
Bacillota
Clostridium botulinum 29401-CD [LGVP]
37058
37132
+
Asn
GTT
[ENA]
¡û
>W121006918
AFXS01000021
Bacillota
Candidatus Arthromitus sp. SFB-2 [AFXS]
1740
1666
-
Asn
GTT
[ENA]
¡û
>W121021243
AGVP01000006
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
501
575
+
Asn
GTT
[ENA]
¡û
>W1710584322
FQVM01000002
Bacillota
Clostridium fallax [FQVM]
172327
172401
+
Asn
GTT
[ENA]
¡û
>W1710584354
FQVM01000012
Bacillota
Clostridium fallax [FQVM]
122
196
+
Asn
GTT
[ENA]
¡û
>W1710584370
FQVM01000032
Bacillota
Clostridium fallax [FQVM]
25749
25675
-
Asn
GTT
[ENA]
¡û
>W1710754986
LHYV01000044
Bacillota
Clostridium botulinum [LHYV]
27371
27445
+
Asn
GTT
[ENA]
¡û
>W1710755037
LHYX01000031
Bacillota
Clostridium botulinum [LHYX]
74054
74128
+
Asn
GTT
[ENA]
¡û
>W1710755041
LHYX01000053
Bacillota
Clostridium botulinum [LHYX]
36114
36040
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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