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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371927 (121 seq.)
>W1711136505
LVAH01000003
Bacillota
Clostridiales bacterium Firm_02 [LVAH]
102833
102907
+
Gly
GCC
[ENA]
¡û
>W1711462856
MJIE01000001
Bacillota
Hornefia porci 1968/3/10 [MJIE]
515163
515089
-
Gly
GCC
[ENA]
¡û
>C171059792
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3235953
3236027
+
Gly
GCC
-
¡û
>C171059820
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3955974
3956048
+
Gly
GCC
-
¡û
>C171059832
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3962372
3962446
+
Gly
GCC
-
¡û
>C171059898
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
619814
619740
-
Gly
GCC
-
¡û
>C171129876
LT632322
Bacillota
Murdochiella vaginalis Marseille-P2341 [LT632322]
1073299
1073370
+
Gly
GCC
-
¡û
>C171130284
LT635480
Bacillota
Ndongobacter massiliensis Marseille-P3170 [LT635480]
138541
138615
+
Gly
GCC
-
¡û
>C171130316
LT635480
Bacillota
Ndongobacter massiliensis Marseille-P3170 [LT635480]
1037558
1037484
-
Gly
GCC
-
¡û
>WENV180095016
MTBK01043850
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1129
1055
-
Gly
GCC
[ENA]
¡û
>WENV180613312
OCPX01046270
[OCPX] human gut metagenome; human gut
288
362
+
Gly
GCC
[ENA]
¡û
>WENV180626147
OCQL01188627
[OCQL] human gut metagenome; human gut
240
166
-
Gly
GCC
[ENA]
¡û
>WENV180705560
ODEJ01008436
[ODEJ] human metagenome; G_DNA_Tongue dorsum
443
369
-
Gly
GCC
[ENA]
¡û
>WENV180756986
ODHW01000005
[ODHW] human metagenome; G_DNA_Tongue dorsum
22653
22579
-
Gly
GCC
[ENA]
¡û
>WENV180764106
ODIA01018693
[ODIA] human metagenome; G_DNA_Tongue dorsum
239
313
+
Gly
GCC
[ENA]
¡û
>WENV180774676
ODIJ01050354
[ODIJ] human metagenome; G_DNA_Tongue dorsum
5
79
+
Gly
GCC
[ENA]
¡û
>WENV180775328
ODIK01000101
[ODIK] human metagenome; G_DNA_Tongue dorsum
47668
47742
+
Gly
GCC
[ENA]
¡û
>WENV180775794
ODIK01004387
[ODIK] human metagenome; G_DNA_Tongue dorsum
443
369
-
Gly
GCC
[ENA]
¡û
>WENV180806387
ODJH01015993
[ODJH] human metagenome; G_DNA_Tongue dorsum
345
419
+
Gly
GCC
[ENA]
¡û
>WENV180864061
ODLH01008782
[ODLH] human metagenome; G_DNA_Tongue dorsum
2509
2583
+
Gly
GCC
[ENA]
¡û
>WENV180874061
ODLP01121501
[ODLP] human metagenome; G_DNA_Tongue dorsum
14
88
+
Gly
GCC
[ENA]
¡û
>WENV180880648
ODLZ01040741
[ODLZ] human metagenome; G_DNA_Tongue dorsum
253
327
+
Gly
GCC
[ENA]
¡û
>WENV180882407
ODMC01000038
[ODMC] human metagenome; G_DNA_Tongue dorsum
117347
117273
-
Gly
GCC
[ENA]
¡û
>WENV180884020
ODMC01032203
[ODMC] human metagenome; G_DNA_Tongue dorsum
239
313
+
Gly
GCC
[ENA]
¡û
>WENV180890981
ODMO01031038
[ODMO] human metagenome; G_DNA_Tongue dorsum
413
487
+
Gly
GCC
[ENA]
¡û
>WENV180895937
ODNI01000002
[ODNI] human metagenome; G_DNA_Tongue dorsum
1067
993
-
Gly
GCC
[ENA]
¡û
>WENV180900963
ODOJ01019845
[ODOJ] human metagenome; G_DNA_Tongue dorsum
239
313
+
Gly
GCC
[ENA]
¡û
>WENV180901599
ODOK01000803
[ODOK] human metagenome; G_DNA_Tongue dorsum
227
301
+
Gly
GCC
[ENA]
¡û
>WENV180926741
ODTL01030860
[ODTL] human metagenome; G_DNA_Stool
332
258
-
Gly
GCC
[ENA]
¡û
>WENV180930821
ODTP01000432
[ODTP] human metagenome; G_DNA_Tongue dorsum
2379
2305
-
Gly
GCC
[ENA]
¡û
>WENV180952900
ODUI01003645
[ODUI] human metagenome; G_DNA_Tongue dorsum
291
217
-
Gly
GCC
[ENA]
¡û
>WENV180958965
ODUM01000008
[ODUM] human metagenome; G_DNA_Tongue dorsum
28791
28865
+
Gly
GCC
[ENA]
¡û
>WENV180963453
ODUN01181004
[ODUN] human metagenome; G_DNA_Stool
237
311
+
Gly
GCC
[ENA]
¡û
>WENV180989023
ODVL01028410
[ODVL] human metagenome; G_DNA_Tongue dorsum
522
448
-
Gly
GCC
[ENA]
¡û
>WENV180994398
ODVQ01080357
[ODVQ] human metagenome; G_DNA_Stool
161
87
-
Gly
GCC
[ENA]
¡û
>WENV181038989
ODXQ01007837
[ODXQ] human metagenome; G_DNA_Tongue dorsum
443
369
-
Gly
GCC
[ENA]
¡û
>WENV181039486
ODXQ01025179
[ODXQ] human metagenome; G_DNA_Tongue dorsum
345
419
+
Gly
GCC
[ENA]
¡û
>WENV181062239
ODYN01096781
[ODYN] human metagenome; G_DNA_Stool
181
255
+
Gly
GCC
[ENA]
¡û
>WENV181068463
ODZZ01000066
[ODZZ] human metagenome; G_DNA_Tongue dorsum
75
1
-
Gly
GCC
[ENA]
¡û
>WENV181102567
OECT01005419
[OECT] human metagenome; G_DNA_Tongue dorsum
955
881
-
Gly
GCC
[ENA]
¡û
>WENV181105058
OEED01000884
[OEED] human metagenome; G_DNA_Tongue dorsum
3102
3028
-
Gly
GCC
[ENA]
¡û
>WENV181109327
OEEJ01026050
[OEEJ] human metagenome; G_DNA_Tongue dorsum
577
503
-
Gly
GCC
[ENA]
¡û
>WENV181111956
OEEL01000049
[OEEL] human metagenome; G_DNA_Tongue dorsum
23403
23477
+
Gly
GCC
[ENA]
¡û
>WENV181112729
OEEL01002626
[OEEL] human metagenome; G_DNA_Tongue dorsum
3959
4033
+
Gly
GCC
[ENA]
¡û
>WENV181423805
OGCO01020132
[OGCO] human gut metagenome; human gut
330
256
-
Gly
GCC
[ENA]
¡û
>WENV181426654
OGCQ01009489
[OGCQ] human gut metagenome; human gut
2311
2385
+
Gly
GCC
[ENA]
¡û
>WENV181510203
OGGQ01044550
[OGGQ] metagenome; Human gut stool
655
729
+
Gly
GCC
[ENA]
¡û
>WENV181752208
OGQQ01002188
[OGQQ] human gut metagenome; faeces
324
398
+
Gly
GCC
[ENA]
¡û
>WENV181787086
OGRN01013022
[OGRN] human gut metagenome; faeces
735
661
-
Gly
GCC
[ENA]
¡û
>WENV181795567
OGRT01000367
[OGRT] human gut metagenome; faeces
27410
27484
+
Gly
GCC
[ENA]
¡û
>WENV181914428
OGYF01000242
[OGYF] human gut metagenome; faeces
4565
4491
-
Gly
GCC
[ENA]
¡û
>W141243458
CAJN020000002
Bacillota
Levyella massiliensis 9403326 [CAJN]
224497
224426
-
Gly
GCC
[ENA]
¡û
>WENV182514264
OIWM01005185
[OIWM] human gut metagenome; faeces
572
498
-
Gly
GCC
[ENA]
¡û
>WENV182606562
OJJT01024383
[OJJT] metagenome; faeces
562
636
+
Gly
GCC
[ENA]
¡û
>WENV182623103
OJKK01016783
[OJKK] metagenome; faeces
308
379
+
Gly
GCC
[ENA]
¡û
>WENV182639770
OJLA01122844
[OJLA] metagenome; faeces
396
470
+
Gly
GCC
[ENA]
¡û
>WENV182745787
OJQT01015108
[OJQT] human gut metagenome; stool sample
352
426
+
Gly
GCC
[ENA]
¡û
>WENV183002028
OLCM01013660
[OLCM] human gut metagenome; human gut
419
493
+
Gly
GCC
[ENA]
¡û
>WENV183112035
OLNP01000037
[OLNP] human gut metagenome; faeces
51280
51354
+
Gly
GCC
[ENA]
¡û
>WENV183132122
OLOB01000515
[OLOB] human gut metagenome; faeces
19227
19153
-
Gly
GCC
[ENA]
¡û
>WENV183161647
OLOV01012103
[OLOV] human gut metagenome; faeces
828
902
+
Gly
GCC
[ENA]
¡û
>WENV183165476
OLOX01006331
[OLOX] human gut metagenome; faeces
488
562
+
Gly
GCC
[ENA]
¡û
>WENV183174991
OLPE01058694
[OLPE] human gut metagenome; faeces
181
255
+
Gly
GCC
[ENA]
¡û
>WENV183187058
OLPO01005585
[OLPO] human gut metagenome; faeces
5863
5789
-
Gly
GCC
[ENA]
¡û
>WENV183191561
OLPR01015500
[OLPR] human gut metagenome; faeces
274
348
+
Gly
GCC
[ENA]
¡û
>WENV183229848
OLQT01000001
[OLQT] human gut metagenome; faeces
285158
285084
-
Gly
GCC
[ENA]
¡û
>WENV183266643
OLRT01006308
[OLRT] human gut metagenome; faeces
774
700
-
Gly
GCC
[ENA]
¡û
>WENV183272975
OLRX01001213
[OLRX] human gut metagenome; faeces
212
138
-
Gly
GCC
[ENA]
¡û
>WENV183279622
OLSB01000627
[OLSB] human gut metagenome; faeces
15485
15559
+
Gly
GCC
[ENA]
¡û
>WENV183286287
OLSE01006412
[OLSE] human gut metagenome; faeces
189
115
-
Gly
GCC
[ENA]
¡û
>WENV183293420
OLSK01000438
[OLSK] human gut metagenome; faeces
22115
22189
+
Gly
GCC
[ENA]
¡û
>WENV183299980
OLSN01072354
[OLSN] human gut metagenome; faeces
362
288
-
Gly
GCC
[ENA]
¡û
>WENV183379839
OLYC01121838
[OLYC] human gut metagenome; feces
279
205
-
Gly
GCC
[ENA]
¡û
>WENV183419849
OMAZ01066346
[OMAZ] human gut metagenome; feces
198
124
-
Gly
GCC
[ENA]
¡û
>WENV183654493
OQWA01051558
[OQWA] human gut metagenome; human gut
382
456
+
Gly
GCC
[ENA]
¡û
>WENV183659588
OQWM01036390
[OQWM] human gut metagenome; human gut
355
281
-
Gly
GCC
[ENA]
¡û
>WENV170561449
CZCA01009702
[CZCA] anaerobic digester metagenome; anaerobic digester
605
679
+
Gly
GCC
[ENA]
¡û
>WENV170561574
CZCA01014260
[CZCA] anaerobic digester metagenome; anaerobic digester
1031
1105
+
Gly
GCC
[ENA]
¡û
>WENV170562964
CZCB01008152
[CZCB] anaerobic digester metagenome; anaerobic digester
153
227
+
Gly
GCC
[ENA]
¡û
>W1910271054
FQLU01000002
Bacillota
Massiliomicrobiota timonensis SN16 [FQLU]
589213
589284
+
Gly
GCC
[ENA]
¡û
>W1910341067
FTPC01000001
Bacillota
Peptoniphilus urinimassiliensis Marseille-P3195 [FTPC]
17718
17644
-
Gly
GCC
[ENA]
¡û
>W1910341077
FTPC01000005
Bacillota
Peptoniphilus urinimassiliensis Marseille-P3195 [FTPC]
369
443
+
Gly
GCC
[ENA]
¡û
>W1911533421
OKQS01000001
Bacillota
Khoudiadiopia massiliensis Marseille-P2746 [OKQS]
211944
211873
-
Gly
GCC
[ENA]
¡û
>W2010248400
CABIWW020000004
Bacillota
Eubacteriaceae bacterium [CABIWW]
130622
130548
-
Gly
GCC
[ENA]
¡û
>W2010274683
CABKVO020000002
Bacillota
Murdochiella massiliensis [CABKVO]
212343
212272
-
Gly
GCC
[ENA]
¡û
>W2010390280
FQLU01000002
Bacillota
Massiliomicrobiota timonensis SN16 [FQLU]
589213
589284
+
Gly
GCC
[ENA]
¡û
>W2010652159
JABXYR010000002
Bacillota
Mogibacterium timidum W9173 [JABXYR]
603067
603141
+
Gly
GCC
[ENA]
¡û
>W2011166108
OKQS01000001
Bacillota
Khoudiadiopia massiliensis Marseille-P2746 [OKQS]
211944
211873
-
Gly
GCC
[ENA]
¡û
>W2011317351
QWEQ01000004
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
234288
234214
-
Gly
GCC
[ENA]
¡û
>W2011317357
QWEQ01000004
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
19860
19786
-
Gly
GCC
[ENA]
¡û
>W2011317392
QWEQ01000043
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
3
77
+
Gly
GCC
[ENA]
¡û
>W2011317396
QWEQ01000049
Bacillota
Emergencia sp. 1XD21-10 [QWEQ]
75
1
-
Gly
GCC
[ENA]
¡û
>W2011338167
QXXF01000006
Bacillota
Clostridiales bacterium 16 [QXXF]
160720
160646
-
Gly
GCC
[ENA]
¡û
>W2011951565
UWPH01000009
Bacillota
Bacilliculturomica massiliensis Marseille-P3303 [UWPH]
168458
168384
-
Gly
GCC
[ENA]
¡û
>W2011951592
UWPH01000025
Bacillota
Bacilliculturomica massiliensis Marseille-P3303 [UWPH]
374151
374225
+
Gly
GCC
[ENA]
¡û
>W2012155440
VUNB01000001
Bacillota
Clostridiales Family XIII bacterium RF-744-FAT-WT-3 [VUNB]
375351
375425
+
Gly
GCC
[ENA]
¡û
>W2110124122
CAJTBY010000014
Bacillota
Clostridia bacterium [CAJTBY]
4616
4542
-
Gly
GCC
[ENA]
¡û
>W2110124141
CAJTBY010000020
Bacillota
Clostridia bacterium [CAJTBY]
39
113
+
Gly
GCC
[ENA]
¡û
>W2110124149
CAJTBY010000039
Bacillota
Clostridia bacterium [CAJTBY]
39
113
+
Gly
GCC
[ENA]
¡û
>W2110124155
CAJTBY010000066
Bacillota
Clostridia bacterium [CAJTBY]
246
320
+
Gly
GCC
[ENA]
¡û
>W2110569750
JAGSND010000023
Bacillota
Sinanaerobacter chloroacetimidivorans BAD-6 [JAGSND]
18998
18924
-
Gly
GCC
[ENA]
¡û
>W2110683089
JAIKLF010000001
Bacillota
Murdochiella sp. Marseille-P8839 [JAIKLF]
429307
429378
+
Gly
GCC
[ENA]
¡û
>C201308450
LR698969
Bacillota
Murdochiella vaginalis [LR698969]
1073299
1073370
+
Gly
GCC
-
¡û
>W2110730217
JAJCMY010000002
Bacillota
Emergencia timonensis DFI.3.26 [JAJCMY]
283701
283627
-
Gly
GCC
[ENA]
¡û
>C241121325
CP047591
Bacillota
Aminipila terrae CBA3637 [CP047591]
2713522
2713596
+
Gly
GCC
-
¡û
>C241121339
CP047591
Bacillota
Aminipila terrae CBA3637 [CP047591]
2715179
2715253
+
Gly
GCC
-
¡û
>C241121355
CP047591
Bacillota
Aminipila terrae CBA3637 [CP047591]
1116519
1116445
-
Gly
GCC
-
¡û
>W1610419855
FIZW01000002
Bacillota
Murdochiella massiliensis SIT12 [FIZW]
212343
212272
-
Gly
GCC
[ENA]
¡û
>W1610605720
LFSF01000025
Bacillota
Clostridiales bacterium DTU073 [LFSF]
23627
23701
+
Gly
GCC
[ENA]
¡û
>W1610947625
LVAH01000003
Bacillota
Clostridiales bacterium Firm_02 [LVAH]
102833
102907
+
Gly
GCC
[ENA]
¡û
>W1710419591
FIZW01000002
Bacillota
Murdochiella massiliensis SIT12 [FIZW]
212343
212272
-
Gly
GCC
[ENA]
¡û
>W1710508818
FMWL01000003
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
46511
46437
-
Gly
GCC
[ENA]
¡û
>W1710508851
FMWL01000021
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
3614
3688
+
Gly
GCC
[ENA]
¡û
>W1710508864
FMWL01000034
Bacillota
Acidaminobacter hydrogenoformans DSM 2784 [FMWL]
12403
12329
-
Gly
GCC
[ENA]
¡û
>W1710571805
FOWF01000005
Bacillota
Eubacterium pyruvativorans [FOWF]
44055
43981
-
Gly
GCC
[ENA]
¡û
>W1710571817
FOWF01000008
Bacillota
Eubacterium pyruvativorans [FOWF]
11375
11301
-
Gly
GCC
[ENA]
¡û
>W1710571836
FOWF01000033
Bacillota
Eubacterium pyruvativorans [FOWF]
3726
3800
+
Gly
GCC
[ENA]
¡û
>W1710578635
FPBT01000001
Bacillota
Eubacterium pyruvativorans [FPBT]
208803
208729
-
Gly
GCC
[ENA]
¡û
>W1710578655
FPBT01000008
Bacillota
Eubacterium pyruvativorans [FPBT]
66519
66593
+
Gly
GCC
[ENA]
¡û
>W1710578677
FPBT01000030
Bacillota
Eubacterium pyruvativorans [FPBT]
15921
15847
-
Gly
GCC
[ENA]
¡û
>W1710727007
LFSF01000025
Bacillota
Clostridiales bacterium DTU073 [LFSF]
23627
23701
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK